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The Momentum for Integrating Collections and Ecological Research: Expanding Collections Stakeholders and Imagining Future Data Needs

by Deborah Paul, Libby Ellwood, Christina Alba, Larry Page
     with contributions from our speakers: Dave Tazik, Jennifer McGuire, Anna Monfils, Barry Sinervo, and Elizabeth Martin; and from some participants present at this symposium including (at least): Vince Smith, Mary Klein, Herrick Brown, and Jason Knouft

‘What do we need to leave behind today to position our future selves for success?’

Call for nominations opens for 2018 GBIF Young Researchers Award

On behalf of the network of national Participants, the GBIF Secretariat is pleased to invite nominations for the 2018 Young Researchers Award. This annual programme aims to foster innovative research and discovery in biodiversity informatics by graduate students whose master’s and doctoral studies rely on GBIF-mediated data.

The 2018 programme will provide €5,000 prizes recognizing the work of two graduate students—preferably, one master’s and one PhD candidate—nominated by GBIF Participant countries.

Award recipients will be selected from the pool of nominees whose names are received by the GBIF Secretariat by 15 June 2018. The winners will be announced just prior to the 25th GBIF Governing Board meeting, to be held in Kilkenny, Ireland, in October 2018.

Eligibility

Candidates must be enrolled in a university graduate programme to be eligible for the award. Candidates must be either citizens of a country participating in GBIF or students at an institution located in a GBIF participant country. Nomination can come either from the country of citizenship or from the country of the candidate’s host institution.

Submission process and deadlines

Students seeking nomination must apply to the Head of Delegation of a GBIF Voting or Associate Participant country (see the complete list). National participants are responsible for establishing their own deadlines and processes for receiving and processing student applications. As a result, graduate students who seek nomination should consult the websites of their national GBIF Participants or contact the Head of Delegation or node manager directly.

Student proposals are first reviewed and prioritized at the national level. GBIF national nodes are encouraged to work closely with the academic communities and higher education institutions in their countries and to reach out to relevant university programmes and research groups.

National Heads of Delegation may submit a maximum of two nominees to the GBIF Secretariat to youngresearchersaward@GBIF.org by the deadline for submissions: 15 June 2018. Heads of Delegations must ensure that submissions are complete and include all the elements listed below. Submissions of incomplete proposals will not be considered.

Award nomination packet

Candidates should prepare their proposal and nomination packets to include:

  1. Research summary (200 words)
  2. Project description (maximum 5 pages, 12-point Arial) that describes
    a. The need for the research and the question(s) it addresses.
    b. The role of data accessed through GBIF in addressing these questions. Research proposals must clearly demonstrate how the study incorporates data mobilized through GBIF. Students with questions about GBIF-enabled data should work with academic advisors, their GBIF national node, the GBIF Secretariat or members of the Science Committee to increase their understanding.
    c. The research scope, plan, methodologies, relevant literature citations and timetable.
    d. If relevant, a description or an excerpt from a data management plan that outlines how data related to the research is published or will be prepared for publication through the GBIF network to GBIF.org.
  3. Budget (1 page), itemized and justified. NOTE: budgetary items are restricted to academic fees, essential equipment, supplies (e.g. hardware, software) and travel; salary support is not permitted.
  4. Curriculum vitae of the student applicant including full contact information at the home institution.
  5. Supporting documents
    a. An official letter from the student’s faculty mentor/supervisor certifying that the applicant is a student in good standing in the graduate programme of the university.
    b. At least one, and no more than three, letters of support from established researchers active in a field that encompasses and incorporates biodiversity informatics (e.g., genetics, species composition and traits, biogeography, ecology, systematics, et al.)

Selection process and criteria

The GBIF Science Committee will review the nominations and select winners of the Young Researchers Awards in September 2018. Awardees will be announced at GBIF’s 25th Governing Board meeting in Ireland the following month.

The criteria for the awards include:

  • Originality and innovation
  • Use of and strategic significance for data accessed through GBIF
  • Measurable effectiveness and impact in advancing biodiversity informatics and/or the conservation of biological diversity

Proposals that are not selected may be updated and resubmitted for consideration in subsequent years.

Awardees are expected to acknowledge GBIF support when disseminate research results via peer-reviewed publications, presentations at professional meetings, and other media.

Original Link

 

Specify new releases and GGBN collaboration

 

The Specify Software Project (www.specifysoftware.org) is pleased to announce the fruition of a joint software effort with the Global Genome Biodiversity Network (www.ggbn.org) to facilitate the communication of genetic sample data to the GGBN Portal from biological museums around the world.  Specify is a collections database management platform used by 450+ biological museum collections worldwide.

The collaboration has brought Specify into compliance with GGBN’s data standard recommendations for describing genetic samples (frozen tissues and DNA extracts) deposited in biological museums. The joint effort also resulted in the implementation of a new network capability in the Specify 7 web platform for automating the assembly and publication of Darwin Core Archives using the GGBN Material Sample Vocabulary or any other Darwin Core extension. Darwin Core Archive files are used for communicating specimen and sample data between museums and biodiversity data aggregators.

Our work extended the Specify database schema by adding a ‘Material Sample’ table and new logical relationships to robustly support the use of frozen tissues and DNA extracts in biological museums to document biological diversity and for phylogenetic research.  We also updated the Specify user interface to accommodate the new genetic resource data types.

This new support for tissues and molecular extracts is available now in Specify 6.6.06 and 7.3. The embedded Darwin Core Archive publisher is available in Specify 7, which is downloadable from the product’s GitHub site:  www.github.com/specify.

The Specify Software Project looks forward to supporting these new features for museums worldwide with genetic resource collections to promote the aggregation of tissue and extract data in the GGBN Portal: www.ggbn.org/ggbn_portal.

The Specify Software Project is an open-source initiative that has provided biological museums for 30 years with robust data management platforms and research data management services for curating and processing biological specimen information.  The Specify Project is grateful for the technical and financial support of the Global Genome Initiative underwriting the development of these integration capabilities.

Job Opportunity: Biodiversity Informatics Manager at Canadensys

Biodiversity Informatics Manager

Canadensys network

Université de Montréal Biodiversity Centre

Context

Canadensys (http://www.canadensys.net) is a network of researchers and biological collections in Canada with the mission to unlock, publish and aggregate specimen information and occurrences from Canadian institutions and initiatives, and to publish them to the Global Biodiversity Information Facility (GBIF). The network encompasses over 30 biological collections that focus mostly on plants, fungi and insects. Canadensys is currently the largest data provider on GBIF for the Canada. The current team is composed of a programmer and a data manager.

Job description

The Biodiversity Informatics Manager will maintain, improve and expand the Canadensys biodiversity network, to ensure its relevance, usefulness and visibility. He/She will design and implement innovative tools to publish, synthesise and display biodiversity data, building upon the current infrastructure, which includes a community portal (http://www.canadensys.ne), blog (http://www.canadensys.net/blog), explorer (http://explorer.canadensys.net/) repository (http://data.canadensys.net/ipt), and checklist database for vascular plants(http://data.canadensys.net/vascan). This work will require coordination and communication with national and international biodiversity informatics initiatives such as the Canadian Biodiversity Informatics Facility (CBIF), the GBIF and the Biodiversity Information Standards (TDWG). The Biodiversity Informatics Manager will be expected to assume an active role in these initiatives(leadership, collaboration, training). He/She will supervise and closely collaborate with a programmer and other informatics-related staff, interact with a large community of researchers,and supervise the data management protocol (database management, efficient data entry, specimen digitization, and data publication). The candidate will work in an environment and contribute to an endeavor where initiative and innovationare both essential and encouraged.

Qualifications

M.Sc or Ph.D. in biology, with a university degree in computer science and/or equivalent experience in both fields. The candidate will have sound informatics network management skills and experience, with examples of achievements in production-level networks. Preference will be given to candidates with experience with software development, biodiversity research, digitization of biological collections, and data publication (e.g. Integrated Publishing Toolkit, Darwin Core). The candidate will have excellent leadership qualities, communication, networking and interpersonal skills, and a working knowledge of English and French.

Work environment

The biodiversity informatics manager will be based at the headquarters of the Canadensys network in the Université de Montréal Biodiversity Centre. As part of the Institut de recherche en biologie végétale (www.irbv.umontreal.ca), the Centre is located on the grounds of the Montreal Botanical Garden. The position is for one year starting in January 2018 (negotiable), with the possibility of renewal. Salary is dependent on experience and qualifications.

Applicants should send by e-mail, before the 1st of December 2017 (or until the position is filled), a letter of interest, c.v., and the names and contact information of three references to: Anne Bruneau, Director Institut de recherche en biologie végétale 4101 Sherbrooke St. East Montreal, Quebec, H1X 2B2 anne.bruneau@umontreal.ca

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