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Biological Collections Databases, Tools, and Data Publication Portals

 

Launching a biological collections digitization program requires careful selection of a database management system, portal option, aggregator, and associated data enrichment tools. Numerous database systems, data publication portals, and other productivity tools are in use across the collections community, all of which vary in cost, installation requirements, storage methods, approaches to data processing, and other important features. iDigBio has begun the process of reviewing the various systems, tools, and data portals in current use, with the goal of building an annotated list of available products. Our reviews include brief descriptions of features, installation and maintenance requirements, cost, ease of use, and other components that collections managers might find useful when evaluating them for fitness. We include a wide range of products in the list, each of which fits one or more categories as denoted in the parenthetical entries immediately below the product name.

Digitization Workflow Workshop Report

Members of the collections community gather in Gainesville, FL to produce optimized specimen digitization workflows at the Developing Robust Object-to-Image-to-Data (DROID) Workshop. Tremendous participant insight holds the promise for informative documentation that will benefit all collections conducting or initiating digitization activities.

e-Newsletter Archive

iDigBio publishes and distributes a monthly e-Newsletter, the iDigBio Spotlight, which highlights iDigBio’s recent activities and discusses issues and challenges facing the biodiversity community and the digitization grand challenge.

Subscribe to the newsletter - You can sign up for our e-Newletter here: http://eepurl.com/B_DIn

For your convenience, we have archived past-issues of this e-Newsletter below.

Paleocollections Digitization Workshop Report

Bruce MacFadden reports on the recent Paleocollections Digitization Workshop hosted by iDigBio and FLMNH. The workshop was held to assess the status and future of digitized collections within the paleontological community. Presentations, discussions and breakout sessions focused on three themes: 1) tools, datapases and portals, 2) digitization and workflows, and 3) research applications and Grand Challenges.  

InvertNet Digitization Workshop Report

The InvertNet TCN reports on the details and accomplishments of the InvertNet Spring Workshop, which was held at University of Illinois/Illinois Natural History Survey. Presentations and breakout groups covered topics including progress in digitizing collections, information on current database platforms, and public outreach and educational activities. Hands-on sessions afforded an opportunity for participants to learn about different software and hardware tools related to digitization workflows.

NSF Awards Second Round of Grants to Advance Digitization of Biodiversity Collections

Last year, the National Science Foundation (NSF), through its Advancing Digitization of Biodiversity Collections (ADBC) program, responded to the need for greater accessibility of biological collections data by awarding four major grants.

This year, NSF funded four, additional major grants, along with two smaller awards that link to and enhance one of last year's projects.

iDigBio Botany 2012 Digitization Workshop - Open Registration

Registration is open for the Specimen Digitization Tools and Practices Workshop at the Botany 2012 Conference.  The workshop will introduce current and future biological and paleontological specimen collections staff to resources and workflows that can lead to greater efficiencies in the digitization of their collections. The workshop will be held from 8:00 AM – 5:30 PM on Thursday, July 12, the day after the conference at the conference facility. Note: you do NOT have to attend the conference to attend the workshop.

NESCent Anatomy Ontologies workshop

The NESCent Academy is offering a five-day workshop in Anatomy Ontologies for Evolutionary Biology. Dates are July 30-August 3. The course covers a basic introduction to ontology design principles and usage, specific ontology considerations for anatomy, application of anatomy ontologies in the context of evolutionary phenotype comparison, and use of anatomy ontologies for image annotation in different taxa. There will be strong emphasis on hands-on exercises that will develop ontology skills and provide exposure to different software applications that are useful in variety of areas of evolutionary biology

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