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...ick Links for Big Data and Bugs: How Massively Collected Biodiversity <br> Data Are Changing the Way We Do Insect Science Title: '''Big Data and Bugs: How Massively Collected Biodiversity Data Are Changing the Way We Do Insect Science'''

...e University. The purpose is to parse OCR'd label data into the respective data fields (e.g. Collector, collection number, etc.). The original SALIX requir ...ed a myriad of fonts have been used. Thus far, we have been constrained to use open-source Optical Character Recognition (OCR) software. By most accounts

...sity Network (GGBN), and DNA sequence/barcode data through Barcode of Life Data System (BOLD). | Data Capture Workflows

...interested in any specimen data gaps noticed, and specimen data use and re-use cases. No matter where you are on this continuum at your institution, keepi ...lection-data-museum-f%C3%BCr-naturkunde Exploitation of digital collection data at the Museum für Naturkunde Berlin]''' ('''Saskia Jancke''', Dirk Striebi

==Data Management Interest Group (DMI) == ...int providers toward potential solutions. Do you need help to re-integrate data into your database? Are you able to help, or know of resources? We invite a

...educationreview.com/open_access/powers-collections.pdf Revolutionizing the Use of Natural History Collections in Education] Powers, K.E.; Prather, A.; Coo **[http://jisc.ac.uk/blog/turn-your-data-into-a-story-09-jan-2014 Turn your data into a story]

...Deb Paul and Joanna McCaffrey from iDigBio on delivering your herbarium’s data to the national iDigBio Portal. Also, this year we are again offering TORCH ...those who have already digitized their collections and wish to make their data available to the iDigBio National Portal for Biocollections. In other words

...TBees, to serve high school and college students. Obtaining specimen-level data on US bee species and communities, and integrating findings into education ...dergraduate Education (BLUE) RCN to build and implement novel biodiversity data-centric Open Education Resources that promote student-oriented learning. SM

...integrated geospatial training paradigm for biocollections researchers and data providers. Research Ideas and Outcomes 4: e32449. https://doi.org/10.3897/r == iDigBio - CCBER GWG Georeferencing for Research Use, a short course ==

...h online resources. The consolidation and increased accessibility of these data is critical to inform and promote new and innovative research, education an ...rough the Advancing Digitization of Biological Collections program and all data resulting from this award will be available through the national resource (

...in it by going to community.gbif.org and creating an account (you can also use your Yahoo or Google credentials to authenticate), and afterwards join the

...more efficient in producing data faster and producing data that's fit-for-use. We'll be choosing our hackathon focus and designing the hackathon together ...our work and seek out potential collaborators. The iSchools 2013 theme is Data-Innovation-Wisdom which lines up perfectly with the goals of the ADBC, iDig

We will use a website platform called Kumospace for coffee breaks and the meet & greet. | align="left" style="background:#ffffc7;"|'''Digital Collections Data and Data Management/Sharing'''

...kshop will serve as a hands-on introduction to finding, editing, and using data in wikidata, using people associated with paleontology collections (e.g., c ...ecently been updated to the latest version. We recommend that participants use a headset for audio. To get started with Zoom, we suggest the video tutoria

...B28;text-align:center;font-size:9pt" | Quick Links for Object to Image to Data Workshop ...igbio.org/wiki/images/0/0d/DROID_Agenda_%28Final%29.pdf Object to Image to Data Workshop Agenda]

...quipment, automated label digitization tools, and programs for analysis of data/ images. DemoCamp presentations feature the latest developments in current ...ction managers, curators, and researchers working with biological specimen data (Specify 6), Collaborative groups wanting a shared network database (Specif

*To connect, go to '''<!--YOU CAN INSERT the link participants will use for remote access here--> ''' and choose '''Enter as Guest''', type your '' *To connect, go to '''<!--YOU CAN INSERT the link participants will use for remote access here--> ''' and choose '''Enter as Guest''', type your ''

...1MHWVhcUzBmJT3tP14fOojVHQWPkTENm3PN5-k1Q5w0s/edit?usp=sharing Feel free to use this document for notes] ...0 will be required to update before users can join webinars in the Digital Data conference!

*[https://www.idigbio.org/content/developing-standards-coding-phenological-data-herbarium-specimens/ Original workshop announcement] ...9;"|Discussion of Survey Results (provided in packet)<br>&bull;Analysis of data gaps<br>•Draft priorities in groups<br>•Flora of North America

...keholders to make recommendations on best practices for handling sensitive data for rare species. The project will fill taxonomic and geographic gaps in U. ...through public databases, will provide access to a rich source of specimen data. Graduate and undergraduate students will make up 90% of the workforce and

Workshop: Towards a strategic approach to mobilising UK museum biodiversity data ...in completing two surveys. We are using this approach to avoid duplicating data – '''it is important to fill in both surveys if you would like to contrib

*Uploading data through the Specify Workbench (Andy Bentley): this could also be a 3 or 4-p *Strategies for sampling data from not-yet-digitized herbaria

...ent, accessible occurrence data to make reliable predictions about habitat use, susceptibility to global change impacts, or other ecologically important i .... Access to these data will be increased through integration with iDigBio. Data for a broad range of research, including the evolutionary ecology of Lepido

*[[Media:Schmits-Source_Materials_Presentation.pdf|Absence Data and Digitizing Source Material for Research (Sarah Schmits)]] **We can use this to help document where we have standards gaps or need to look at other

...gory: IPT]][[Category: Darwin Core Archive]][[Category: DwC-A]][[Category: Data registration]][[Category: RSS]] ...eed assistance related to data ingestion, contact [mailto:data@idigbio.org data@idigbio.org].

...f Southeast Asia and the Himalaya-Hengduan region. These mobilized digital data will accelerate research to conserve endangered plant species and understan ...additional specimen digitization by citizen-scientists. Digitized specimen data mobilized through this project will be shared and made available through iD

...m collections, containing specimens collected over the last 400 years. The data mobilized in this effort will help us achieve a better scientific understan ...ough the Advancing Digitization of Biological Collections program, and all data resulting from this award will be available through the national resource (

...tute a full and inclusive style guide, but seek to help you understand and use the system. They support the 2013 Wakulla web presence design. Be aware th ...ay=node/add Drupal content templates]. If you have any doubts about how to use which template, or when, look in the repository at [https://www.idigbio.org

...CT, no imaging<br>* Institutional predispositions regarding the value and use of images ...kground-color:#FFF8DC;"|[[Media:A_researcher’s_perspective.pdf|Imaging for data collection: An overview]]

...million individual specimens) will be made available through public online data portals. While the geographic ranges for many species of mollusks are well- ...ution for detecting biotic changes. The data will be shared through public data repositories, including iDigBio, GBIF, OBIS, and the InvertEBase Symbiota p

<br />Editable copy of the DROID4 workflows for input and editing. Please use a color other than black to make edits and changes. Changes are saved immed ...GeoScienceWorld_OpenGeoSci Presentation.pdf|OPENGEOSCI & PUBLIC GEOSCIENCE DATA DISCOVERY (Alix Vance)]]

...Taxon Concept discussion 13:30-14:15, Tuesday, 2018-06-05, at the Digital Data in Biodiversity Research Conference, Berkeley''' ...ncepts solve a major problem for biodiversity informatics; so why don’t we use them?”''

* We suggest using the desktop client or mobile app, which use less bandwidth than Zoom in your browser. See Zoom help for more: https://b * Please use the Zoom Q&A feature if you have questions for the presenters. The chat fun

[[Category:Workshop]][[Category: Data carpentry]][[Category: Biodiversity informatics]] ...x.php/Managing_Natural_History_Collections_Data_for_Global_Discoverability Data Management for Collection Managers].</div>

...d to allow paleontological specimens to be integrated with modern specimen data, thereby benefiting research on distribution of organisms over time. Our ef ...ugh the Advancing Digitization of Biodiversity Collections program and all data resulting from this award will be available through the national resource (

...ilities might collaborate more closely in the future to deliver integrated data and services that are needed by stakeholder communities and other internati ...ons_-Portal.pdf|Vince Smith: NHM Digital Collections Programme and the NHM Data Portal]]

...you do not have a Google Drive account, or do not wish to use it, you may use [https://docs.google.com/document/d/1BiMRCeQceroOGDtmUNLYowGuZhfS-RiXUeDuTu |valign="top" | ADBC Collections Providing Data

...data are easily accessed and available for other research and educational use. Other institutions and collections may join an existing TCN as a Partner t ...TCN: Collaborative Research: Digitization and Enrichment of U.S. Herbarium Data from Tropical Africa to Enable Urgent Quantitative Conservation Assessments

|Title=Data Without Borders ICE 2016, Monday 26 Sept, 130-530 EST |[https://www.idigbio.org/content/data-without-borders-symposium-xxv-international-congress-entomologists-ice-2016

.... The fact that a scientist based in Asia can download and access specimen data collected in Europe, which are stored in an online database housed in North ...ncing our knowledge. Imagine how integrated the study of pathogens and the use of natural history collections could be if the Department of Public Health

...institutions have now joined in an effort to digitize and share online all data associated with macrofungi specimens. The resulting resource will enable a ...ugh the Advancing Digitization of Biodiversity Collections program and all data resulting from this award will be available through the national resource (

...iDigBio's mission focuses on specimen digitization, data sharing, and data use, this series is intended to encompass all opportunities that citizen scienc [https://www.citizenscience.org/2020/03/13/new-data-quality-compendium/ Data Quality Resource Compendium for Citizen and Community Science]

* [[Media:IDigBio_Summit2016_HowToGetDataToiDigbio.pdf | ‎How to get data to iDigBio]] [Joanna McCaffrey] |TCN Management, Data, and Reporting<br>

...ll cover tools and techniques used to correctly interpret textual location data into spatial descriptions that can be used in mapping and analyses. Partici ...ons that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to wor

...inary) repositories. Assess museum/institution perspectives on third party data. ...bilities of collections in these situations dealing with third party image data. However, when collections decide to take on ownership and preservation res

...ave you ever wondered: Why do we have these collections? How do scientists use them for research? And how could educators tap into these vast resources? ...ands-on activities that utilize collections, digitization, and collections data, and develop new ways to incorporate collections-based educational resource

iDigBio encourages the use of IANA media types (formerly MIME types) in the dc:format field where poss ...e "unsupported" by iDigBio for the generation of derivatives. We encourage data providers to continue sharing those media since sharing increases discovera

...rning how to best accommodate new systematics, evolution, and biodiversity data types and figures (formats, file types, etc). The short survey at the follo ...[[Media:Dean_Martin_opening_remarks.pdf|Opening Remarks: Inaugural Digital Data in Biodiversity Research Conference]]<br>Introduction to iDigBio and ADBC

...ps://www.google.com/maps/search/Restaurants/@29.6309718,-82.3748857,15.16z/data=!4m8!2m7!3m6!1sRestaurants!2sFlorida+Museum+of+Natural+History,+3215+Hull+R ...ps://www.google.com/maps/place/Gainesville,+FL/@29.6864951,-82.4598348,11z/data=!3m1!4b1!4m5!3m4!1s0x88e6202169bf2c2b:0x80e7795d28108d96!8m2!3d29.6516344!4

==='''''Digital Data in Biodiversity Research Conference'''''=== ...0 will be required to update before users can join webinars in the Digital Data conference!

...-D scans of fossils for free download and printed 3-D models for classroom use. Products of this project will also include workshops to engage science tea ...ng a key time in the history of life. Moreover, the data will be ideal for use with an assortment of modern quantitative tools -including paleoecological

-d, --data <data> ...interchanging data via APIs and especially modern Web Services. Effective use of the iDigBio API will require some understanding of JSON.

== iDigBio Data and Schema == Data elements generally conform to the Biodiversity Information Standards (also

...for managing taxonomic information, but is recommended since it is easy to use, runs on both PC and Mac and can be downloaded free from the web. It is als == Collection Data Registration at the Nationaal Herbarium Nederland: Data Guidelines, by L. P. M. Willemse, J. B. Mols. ==

...ton, D.C., metropolitan area. We encourage all Summit participants to make use of the Metro when travelling in and around D.C. Some useful Metro links: '' ...lington,+950+N+Stafford+St,+Arlington,+VA+22203/@38.8762982,-77.103483,13z/data=!3m1!4b1!4m18!4m17!1m5!1m1!1s0x89b7b731402fe095:0x4168af016d076bad!2m2!1d-7

...for managing taxonomic information, but is recommended since it is easy to use, runs on both PC and Mac and is can be downloaded free from the web. It is ....uwyo.edu/gmapviewer/about.php), an online, open-source viewer created for use with herbarium specimens.

...0 will be required to update before users can join webinars in the Digital Data conference! ...ww.idigbio.org/wiki/images/a/a7/DigitalData2022_PresenterGuide.pdf Digital Data Presenter Guide]

...l resources of the nation. Easy access to robust, expertly vetted baseline data for species occurrences, abundances, and distribution ranges, and monitorin ...rough the Advancing Digitization of Biological Collections program and all data resulting from this award will be available through the national resource (

...nization, the purpose of which is to create a national resource of digital data documenting existing biological collections and advancing scientific knowle ...AIM-UP! is an NSF-funded Research Coordination Network (RCN) exploring the use of natural history collections in undergraduate education.

* We suggest using the desktop client or mobile app, which use less bandwidth than Zoom in your browser. See Zoom help for more: https://b * Please use the Zoom Q&A feature if you have questions for the presenters. The chat fun

...matics]][[Category:Imaging]][[Category:Project management]][[Category:Data use]][[Category: Entomology]][[Category:Digitization]]

...ps://www.google.com/maps/search/Restaurants/@29.6309718,-82.3748857,15.16z/data=!4m8!2m7!3m6!1sRestaurants!2sFlorida+Museum+of+Natural+History,+3215+Hull+R ...ps://www.google.com/maps/place/Gainesville,+FL/@29.6864951,-82.4598348,11z/data=!3m1!4b1!4m5!3m4!1s0x88e6202169bf2c2b:0x80e7795d28108d96!8m2!3d29.6516344!4

...ps://www.google.com/maps/search/Restaurants/@29.6309718,-82.3748857,15.16z/data=!4m8!2m7!3m6!1sRestaurants!2sFlorida+Museum+of+Natural+History,+3215+Hull+R ...ps://www.google.com/maps/place/Gainesville,+FL/@29.6864951,-82.4598348,11z/data=!3m1!4b1!4m5!3m4!1s0x88e6202169bf2c2b:0x80e7795d28108d96!8m2!3d29.6516344!4

[[Category:Data ingestion|Media appliance input CSV format]] | Recommended best practice is to use a controlled vocabulary such as the list of Internet Media Types [MIME]

...ll cover tools and techniques used to correctly interpret textual location data into spatial descriptions that can be used in mapping and analyses. Partici ...ons that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to wor

.... The fact that a scientist based in Asia can download and access specimen data collected in Europe, which are stored in an online database housed in North ...ncing our knowledge. Imagine how integrated the study of pathogens and the use of natural history collections could be if the Department of Public Health

...m of Natural History. ePANDDA (enhancing Paleontological and Neontological Data Discovery) is also available on [https://github.com/ePandda GitHub]. ...rogramming interface (API) in connecting these three resources, as well as use the API for their own research, outreach, and collections purposes. While

...tes over time correlated with man-made environmental changes, such as land use change, atmospheric pollution, global climate change due to greenhouse gase ...an we predict where specific species can be found using existing herbarium data and GIS information, both currently and in the future? </li>

...e capacity of experts to provide remote identifications and annotations of data that can be sent throughout the network. ...ugh the Advancing Digitization of Biodiversity Collections program and all data resulting from this award will be available through the national resource (

To register: [https://www.eventbrite.com/e/3rd-annual-digital-data-conference-methods-protocols-and-analytical-tools-for-specimen-based-ticket ...to be co-located with the conference. This course helps leaders of digital data resources, collections, field stations, and labs enhance their skills in st

...rsity informatics. The current project will allow the SERNEC group to make data available for over 3 million specimens using the latest photography and inf ...ough the Advancing Digitization of Biological Collections program, and all data resulting from this award will be available through the national resource (

==Do you use barcodes on your specimens?== ...o one has presented a more convincing argument to me than "well, libraries use them".

...0 will be required to update before users can join webinars in the Digital Data conference! ...ww.idigbio.org/wiki/images/1/1b/DigitalData2021_PresenterGuide.pdf Digital Data Presenter Guide - Updated 6/4/21]

...be required to update before users can join these webinars in the Digital Data conference! ...idigbio.org/wiki/images/9/99/Digital_Data_2020_Presenter_Guide.pdf Digital Data Presenter Guide]

...nic gardens, will participate in these efforts. This project will generate data that will increase our understanding of flowering time shifts - a critical ...CAP TCN will develop novel data standards for capturing and sharing trait data from specimens. Building on already successful national and regional progra

..., catalyzing new research and education initiatives. These newly digitized data will have immediate and long-lasting benefits for our understanding of orga ...will also develop and implement undergraduate teaching modules focused on data held in natural history collections. These modules will be disseminated to

...for research. These digitized data constitute a primary platform for “Big Data” research in the biodiversity sciences. Once aggregated, they are freely ...evolution, distribution, and biology of land plants. Applications of this data extend to conservation, climate change and global warming. You will be join

| 2:15 || <strong>Engaging the Use of Emerging Research Technology for Collections-based Research and Discover *Mammalogy + Ornithology: Trait data digitization + UV photography setup

...ll have a transformative influence on the way that researchers collect and use biological specimens in the future, and will serve as a useful model for co ...rough the Advancing Digitization of Biological Collections program and all data resulting from this award will be available through the national resource (

! width="20%" scope="col"| Data Field ...e) are encouraged to use this group as a place to discover and discuss API data access, issues, and solutions, as well as to build a dispersed network of A

* We suggest the desktop client or mobile app, which use less bandwidth than Zoom in your browser. See Zoom help for more: https://b ...ll feature an introduction to APIs and an example of how to review iDigBio data quality flags using the API.<br>

...mmercial OCR software that can be used to convert typed and typeface label data from specimens into digital text.<br> |valign="top"|Batch data extraction from TIFF &amp; JPG formats<br>

...research-use-virtual-mini-workshop Finding Field Station Data for Research Use: A virtual mini-workshop ] ...gs, as well as how these records might be used to augment existing station data.

*[https://www.idigbio.org/content/second-annual-digital-data-biodiversity-research-conference-emerging-innovations iDigBio's Report]<br> *[https://www.idigbio.org/content/save-date-emerging-innovations-biodiversity-data Conference announcement]

Documenting Collections Use: The 2018 Science Report of the Canadian Museum of Nature | Standardization and Data Flexibility: Lessons Learned from Digitization of a Large Lepidoptera Natur

...bels has DwC compliant event dates, thus '''you probably only want to only use verbatim fields for stats''') Check this with Alex --[[User:Dpaul|Dpaul]] 1 ...'Daryl''') <br> ('''Bryan:''' Odd to not have "elevation" I agree with the use of verbatimElevation. If "elevation" is filled it is numeric.) <br> ('''Deb

...ty for research, data management, education and other primary biodiversity data uses. ...mmercial OCR software that can be used to convert typed and typeface label data from specimens into digital text.

...uate students in the tools for creating 3D anatomical models. To drive the use of these digital specimens by K12 STEM educators, we will conduct teacher-d ...gacy data from previous and existing projects, supply media information to data aggregators including iDigBio, and engage educators and students. We will s

[[Category:Data ingestion]] ...y updating this page to try to keep it in sync no longer seems like a good use of resources.