Wet Collections Digitization Workshop: Difference between revisions
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==This wiki contains materials supporting iDigBio's wet collections digitization workshop held at University of Kansas, March 5-6, 2013. Included are links to resources, outlines, and training materials related to digitizing wet collections. Other important tools and resources are available from the Digitization Resources main page, accessed from the first link below. | ==This wiki contains materials supporting iDigBio's wet collections digitization workshop held at University of Kansas, March 5-6, 2013. Included are links to resources, outlines, and training materials related to digitizing wet collections. Other important tools and resources are available from the Digitization Resources main page, accessed from the first link below.== | ||
==[ | ==[[Digitization Resources|Digitization Resources Wiki Home]]== | ||
<br /> | <br /> | ||
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==Workshop Logistics== | ==Workshop Logistics== | ||
* [ | * [[Media:WetCollectionsWorkshop_Logistics.pdf|Workshop Logistics Document]] | ||
*[ | * [[Media:LawrenceRestaurants.pdf|Where to Eat in Lawrence]] | ||
* [ | * [[Media:Lawrence.jpg|Map of Lawrence]] | ||
==Workshop Agendas and Notes== | ==Workshop Agendas and Notes== | ||
* [ | * [[Media:Agenda_WetCollections.pdf|Workshop Agenda]] | ||
* [https://vimeo.com/album/2298842 Workshop Recordings] | * [https://vimeo.com/album/2298842 Workshop Recordings] | ||
* [ | * [[Media:IDigBio_wet_collection_workshop_demonstration_stations.pdf|Tours and Demonstrations Schedule]] | ||
* [http://tinyurl.com/WetNotes1 Collaborative notes page, 5 March] | * [http://tinyurl.com/WetNotes1 Collaborative notes page, 5 March] | ||
* [http://tinyurl.com/WetNotes2 Collaborative notes page, 6 March] | * [http://tinyurl.com/WetNotes2 Collaborative notes page, 6 March] | ||
==Getting Started with Wet Collections Digitization== | ==Getting Started with Wet Collections Digitization== | ||
*[ | * [[Media:Wet_collections_getting_started.pdf|Getting Started with Wet Collections Digitization (pdf of ppt by Gil Nelson)]] | ||
*[ | * [[Media:CAJohnson_iDigBioWetDigit.pdf|Getting Started at AMNH, Chris Johnson]] | ||
*[ | * [[Media:Brantley_KU_March_2013.pdf|Emergence of SCAN, Sandy Brantley, U. New Mexico]] | ||
*[ | * [[Media:Bjork_InterdisciplinaryExchange_iDigBioMarch2013.pdf|Interdisciplinary Exchange, Sally Bjork, U. Michigan]] | ||
==Imaging Wet Collections== | ==Imaging Wet Collections== | ||
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* [http://silurus.ansp.org/ACSI/corresp/digital_imaging.html Guidelines & Suggestions for Image Capture of Catfishes and Type Specimens (Mark Sabaj)] | * [http://silurus.ansp.org/ACSI/corresp/digital_imaging.html Guidelines & Suggestions for Image Capture of Catfishes and Type Specimens (Mark Sabaj)] | ||
* [http://silurus.ansp.org/ACSI/corresp/digital_imaging_tips2.html Image Manipulation Using Adobe Photoshop (version 7) (Luckenbill and Sabaj)] | * [http://silurus.ansp.org/ACSI/corresp/digital_imaging_tips2.html Image Manipulation Using Adobe Photoshop (version 7) (Luckenbill and Sabaj)] | ||
* [ | * [[Media:SabajPerez_2009_textonly.pdf|PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (text only) ]] | ||
* [ | * [[Media:SabajPerez_2009.pdf|PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (with images; LARGE pdf, ~43MB) ]] | ||
* [http://www.mcz.harvard.edu/Departments/Ichthyology/fish_imaging.html Museum of Comparative Zoology Ichthyology Department Imaging Equipment Specifications] | * [http://www.mcz.harvard.edu/Departments/Ichthyology/fish_imaging.html Museum of Comparative Zoology Ichthyology Department Imaging Equipment Specifications] | ||
* [http://www.eboxbio.com/ Photo EBox Imaging Station] | * [http://www.eboxbio.com/ Photo EBox Imaging Station] | ||
| Line 45: | Line 45: | ||
==Image Processing== | ==Image Processing== | ||
* [ | * [[File:Luckenbill_Wet_Collections_image_editing.pdf|Image Processing for Wet Collections, Kyle Luckenbill]] | ||
*[ | * [[Media:Photoshop_CS6_tutorial.pdf|Photoshop CS6 Tutorila, Kyle Luckenbill]] | ||
==Georeferencing== | ==Georeferencing== | ||
Revision as of 12:43, 5 January 2014
Digitization Resources Wiki Home
Workshop Report
Wet Collections Digitization Workshop
Workshop Logistics
Workshop Agendas and Notes
- Workshop Agenda
- Workshop Recordings
- Tours and Demonstrations Schedule
- Collaborative notes page, 5 March
- Collaborative notes page, 6 March
Getting Started with Wet Collections Digitization
- Getting Started with Wet Collections Digitization (pdf of ppt by Gil Nelson)
- Getting Started at AMNH, Chris Johnson
- Emergence of SCAN, Sandy Brantley, U. New Mexico
- Interdisciplinary Exchange, Sally Bjork, U. Michigan
Imaging Wet Collections
- Imaging with InvertNet's Robot Chris Taylor, Illinois Natural History Survey
- Digitizing 35mm Slides, Laura Halverson Monahan, U. Wisconsin, Madison
- Imaging Fishes (workshop presentation), Mark SabajPerez, Academy of Natural Sciences, Philadelphia/Drexel University
- Digital Imaging Tips (Mark Sabaj and Kyle Luckenbill)
- Guidelines & Suggestions for Image Capture of Catfishes and Type Specimens (Mark Sabaj)
- Image Manipulation Using Adobe Photoshop (version 7) (Luckenbill and Sabaj)
- PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (text only)
- PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (with images; LARGE pdf, ~43MB)
- Museum of Comparative Zoology Ichthyology Department Imaging Equipment Specifications
- Photo EBox Imaging Station
Imaging Equipment
Image Processing
Georeferencing
Identifiers, Databases, and Sharing Data
- iDigBio's Database, Portals, Aggregators, and Tools Review Page
- It's About Data: Identifiers, Darwin Core, Sharing Data, Choosing a Database, Digitization Maturity (pptx by iDigBio's Deborah Paul, Greg Riccardi, Joanna McCaffrey)
- Data Cleaning, Validation and Enhancement, Deborah Paul, iDigBio
- Use this power point and the notes in it to experiment with Open Refine - a powerful tool for cleaning up data, validating values and enhancing existing data.
- Link to the OpenRefine.org website for data cleaning tools
- Open Refine Google+ Community for users of Open Refine. Started by a participant of this Wet Collections Workshop. Join us!
- Power Point of Andy Bentley's presentation
- Specify, Andy Bentley, U. Kansas
- Symbiota, FilteredPush, and Other Tools, Ed Gilbert, Arizona State
Pre-digitization Curation
Workflows
- Introduction to Digitization Workflows for Wet Collections (pdf of ppt by Gil Nelson)
- PDF of Brian Sidlauskas' presentation on digitizing textual data from the historic card catalog at the Oregon State Ichthyology Collection, Brian Sidlauskas
- Workflow for entering textual data from the historic card catalog at the Oregon State Ichthyology Collection into Specify 6, including appendices on creating retroactive field numbers and standardizing drainage designations in Oregon, Brian Sidlauskas
- Go With the Flow, Sally Bjork, U. Michigan
- Digitizing Field Books and Collecting Events, Andrew Short, U. Kansas
- Fishes of Texas Project: Specimen Imaging, Adam Cohen