Fluid Preserved Invertebrate Imaging: Difference between revisions

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! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Fluid Preserved Invertebrate Imaging
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| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE--> [[File: Fluid_Preserved_Logo.PNG ‎|center|300px| ]]<br />
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!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Fluid Preserved Invertebrate Imaging Workshop
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|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Workshop Agenda]
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|[https://www.idigbio.org/biblio?f%5bkeyword%5d=271 Fluid Preserved Invertebrate Imaging Workshop Biblio Entries]
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|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Report]
|}
==Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki==
==Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki==
This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of MIchigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.
This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.
 
==Digitization Training Workshops Wiki Home==
*[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]
 
==Workshop Announcement==
*[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]
 
==Fluid preserved arthropod imaging Workshop Report]==
*[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report]
 
==Arthropod and slide imaging interest group wiki==
*[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki]
 
==Workshop Agenda and Logistics==
*[[Media:InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf|Tentative Workshop Outline]]
*[[Media:Logistics_shuttle_meals.pdf|Shuttle info, hotel assignments, and meal plan]]
*[[Media:Invert_Imaging_Workshop_Participants_Email.pdf|A few last-minute logistical details (text of e-mail, 2013-09-04)]]
*[http://uunions.umich.edu/league/inn/ Information about Michigan League]
*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel]
*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League]
*[[Media:Leaguemap.pdf|Downloadable pdf map from Bell Tower to Michigan League]]
*[[Media:Central_large.pdf|U. Michigan Campus map]]
*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology]
 
==Nearby (and not-so-nearby) Restaurants==
*[http://uunions.umich.edu/league/food/restaurants/ Restaurants at Michigan League]
*[http://www.gogobot.com/inn-at-the-michigan-league-ann-arbor-hotel--nearby--restaurants Restaurants near Michigan League]
*[https://maps.google.com/maps?fll=42.277368326826966,-83.73925255554201&fspn=0.004858198152959403,0.009741783142089844&safe=off&st=115968771510351694523&ie=UTF-8&q=restaurants+near+university+of+michigan+ann+arbor&fb=1&gl=us&ll=42.277368326826966,-83.73925255554201&spn=0.004858198152959403,0.009741783142089844&rq=1&ei=44spUr6EI4Tw8QTbm4CQCw&ved=0CPMBEMgT Map of restaurants in Ann Arbor (Michigan League is at flag J for reference)]
 
== Collaborative Notes Documents ==
 
*[https://docs.google.com/document/d/1VMEuM67Yy9glNCoFxr0R-1Bz1lp_criAuzvduzy_UhY/edit?usp=sharing Day 1]
*[https://docs.google.com/document/d/14PyXh7jTesAsYbOUi5R4reG0cOwvo0mTRQsJmsrOqzw/edit?usp=sharing Day 2]
*[https://docs.google.com/document/d/1ge_HIOpH1tvm_F-bmAGZ7nZHcrRkKhueuNwdOLd7NUs/edit?usp=sharing Issues Summary]
 
==Presentations==
 
*[[Media:IDigBio_Intro.pdf|Introduction to iDigBio, Gil Nelson]]
*[[Media:Brantley_InvertImaging_2013.pdf|Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]]
*[[Media:DIY_Techniques.pdf|DIY Techniques, Mark O'Brien]]
*[[Media:Patrick_spider_imaging.pdf|Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]]
*[[Media:Scanning_Microscope_Slides_Oboyski.pdf|Scanning Microscope Slides, Peter Oboyski]]
*[[Media:Naturalis_microscopic_slides.pdf|Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]]
*[[Media:Hand_sanitizer_Droege.pdf|Macro photography in hand sanitizer, Sam Droege]]
*[[Media:Final_Stephanie_Ware_02.pdf|Slide imaging at the Field Museum, Stephanie Ware]]
*[[Media:IDIGBIO_WORKING.pdf|Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith]]
*[[Media:Brilmyer_idig_bio.pdf|Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer]]
*[[Media:Hedin_iDigBio_presentation.pdf|Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]]
*[[Media:Selden.pdf|Imaging techniques in the study of fossil spiders, Paul Selden]]
*[[Media:Lightroom_presentation.pdf|Processing images with Lightroom, Rich Rabeler]]
*[[Media:Imaging_Vic_Smith.pdf|Fluid-preserved imaging, Roy Larimer]]
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]
 
== Workshop Recordings ==
 
*[http://idigbio.adobeconnect.com/p38b8xvyben/ Day 1 AM Session 8:15am-10:30am]
*[http://idigbio.adobeconnect.com/p7djloaq40w/ Day 1 AM Session 11am-12:30pm]
*[http://idigbio.adobeconnect.com/p32zu1pozn8/ Day 1 PM Session 4:15pm- 5pm]
 
*[http://idigbio.adobeconnect.com/p92ihei2kp4/ Day 2 AM Session 8:15am- 10:15am]
*[http://idigbio.adobeconnect.com/p8fh0tconam/ Day 2 AM Session 10:30am- 12:15pm]
 
*[http://idigbio.adobeconnect.com/p9bq9n3yadn/ Day 2 PM Lightroom Demo Session]
*[http://idigbio.adobeconnect.com/p1zalz4mex3/ Day 2 PM O'Brien Demo Session]
*[http://idigbio.adobeconnect.com/p4nctnt76u8/ Day 2 PM Closing Session 5pm- 5pm]
 
==Images for Review==
*[[Media:08-10-29_Erig_blaesa2_comp.jpg|Spider from Sandy Brantley 1]]
*[[Media:Xy_cu_07-12-20_114944_R8_S4.jpg|Spider from Sandy Brantley 2]]
 
==Documentation==
*[http://essigdb.berkeley.edu/search_labels.html  Essig Museum of Entomology microscopic slide image database]. Search for "Aetheca" in the filename (as an example) and click on the filename link to see the image. Contributed by Pete Oboyski.]
*[http://www.velehanden.nl/projecten/bekijk/details/project/nat_nbc Crowd Sourcing project for glass slides at Naturalis Biodiversity Center (Google Chrome translates the site nicely)]
*[http://www.youtube.com/watch?v=S-_yvIsucOY How to Take High Resolution Macro photographs Using a Simple Studio Setup: Camera Equipment (Sam Droege)]
*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)]
*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)]
*[[Media:How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf|Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]]
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images]
*[[Media:Leica_Imaging_Manual_July1_2013.pdf|LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer]]
*[[Media:Ant_Databasing_Protocols_August.pdf|Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]]
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]


==[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]==
==Workflow Documents==
<br />
*[https://www.idigbio.org/content/workflow-modules-and-task-lists iDigBio community-generated modular workflows, including those for things in spirits in jars]


==Workshop Agenda==
==Interesting Sidelights==
*[http://www.news.com.au/technology/sci-tech/at-this-scale-no-insect-is-ugly-up-close-and-personal-with-creepy-crawlies/story-fn5fsgyc-1226719021395 Recent news article from Australia highlighting Sam Droege and his images]
*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images]
*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page]
*[[Dried Insect Digitization Workshop|Pinned insect digitization workshop, Chicago, Spring 2013]]
*[[Wet Collections Digitization Workshop|Wet collections digitization wiki, U. Kansas, March 2013]]
*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy]
*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu]
*[http://www.irfanview.com/ IrfanView software for file re-naming]
*[http://www.barcode-labels.com/ Potential source for bar codes suggested by Mariel Campbell]
*[http://www.gaylord.com/adblock.asp?abid=718&search_by=desc&search_for=selfadhesive%20labels&mpc=WW Potential source for labels suggested by Joost Leusen]

Latest revision as of 15:37, 3 February 2015

Fluid Preserved Invertebrate Imaging
Fluid Preserved Logo.PNG

Quick Links for Fluid Preserved Invertebrate Imaging Workshop
Fluid Preserved Invertebrate Imaging Workshop Agenda
Fluid Preserved Invertebrate Imaging Workshop Biblio Entries
Fluid Preserved Invertebrate Imaging Report

Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki

This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.

Digitization Training Workshops Wiki Home

Workshop Announcement

Fluid preserved arthropod imaging Workshop Report]

Arthropod and slide imaging interest group wiki

Workshop Agenda and Logistics

Nearby (and not-so-nearby) Restaurants

Collaborative Notes Documents

Presentations

Workshop Recordings

Images for Review

Documentation

Workflow Documents

Interesting Sidelights

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