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BioDigiCon 2022: Difference between revisions
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→Day 2 - Wednesday, 28 September 2022
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| 10:40 – 10:50|| US National Science Foundation TIP Program || Post Mortem It Sorts 'Em - Specify 6 and 7: An Overview from a User Perspective <br> Randy Singer, University of Michigan Museum of Zoology|| [https://drive.google.com/file/d/1OHhQnK9iZ4J8a35DTWw95wg_xL6dUmrp/view?usp=sharing Using digitisation data to move a herbarium] <br> Claire Brandenburger, National Herbarium of NSW, Australian Institute of Botanical Science; Hannah McPherson, National Herbarium of NSW; Andre Badiou, National Herbarium of NSW; Mel Wong, National Herbarium of NSW; Guy Lowe, National Herbarium of NSW. | | 10:40 – 10:50|| US National Science Foundation TIP Program || [https://drive.google.com/file/d/15l6lqHz_l1MTBJFnQ0UcDoWgcQlnX4Cu/view?usp=sharing Post Mortem It Sorts 'Em - Specify 6 and 7: An Overview from a User Perspective] <br> Randy Singer, University of Michigan Museum of Zoology|| [https://drive.google.com/file/d/1OHhQnK9iZ4J8a35DTWw95wg_xL6dUmrp/view?usp=sharing Using digitisation data to move a herbarium] <br> Claire Brandenburger, National Herbarium of NSW, Australian Institute of Botanical Science; Hannah McPherson, National Herbarium of NSW; Andre Badiou, National Herbarium of NSW; Mel Wong, National Herbarium of NSW; Guy Lowe, National Herbarium of NSW. | ||
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| 10:50 – 11:00 || CHIPS, Science, and Collections. <br> Reed S. Beaman, National Science Foundation | | 10:50 – 11:00 || CHIPS, Science, and Collections. <br> Reed S. Beaman, National Science Foundation | ||
|| [https://drive.google.com/file/d/1XU3cUBXXtV0c-75mD-zleNEiT0WemBxr/view?usp=sharing Symbiota: Managing and Mobilizing Biodiversity Data and Supporting Data Providers] <br> Katie Pearson, Symbiota Support Hub; Edward Gilbert, Arizona State University; Nico Franz, Arizona State University; Jenn Yost, California Polytechnic State University; Samanta Orellana, Arizona State University; Greg Post, Arizona State || [https://drive.google.com/file/d/1QxjX028RzwrfKnv8EBoJvvHSehf3rK7G/view?usp=sharing I’m Lichen These Images: Workflows established for the GLOBAL TCN project.] <br> Laura Briscoe, New York Botanical Garden; Leanna McMillin, New York Botanical Garden | || [https://drive.google.com/file/d/1XU3cUBXXtV0c-75mD-zleNEiT0WemBxr/view?usp=sharing Symbiota: Managing and Mobilizing Biodiversity Data and Supporting Data Providers] <br> Katie Pearson, Symbiota Support Hub; Edward Gilbert, Arizona State University; Nico Franz, Arizona State University; Jenn Yost, California Polytechnic State University; Samanta Orellana, Arizona State University; Greg Post, Arizona State || [https://drive.google.com/file/d/1QxjX028RzwrfKnv8EBoJvvHSehf3rK7G/view?usp=sharing I’m Lichen These Images: Workflows established for the GLOBAL TCN project.] <br> Laura Briscoe, New York Botanical Garden; Leanna McMillin, New York Botanical Garden | ||
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| 11:00 – 11:10 || US National Science Foundation Review, Q&A || EMu at the Smithsonian <br> Michelle Brown, Smithsonian National Museum of Natural History; Beth Gamble, NMNH; Ducky Nguyen, NMNH; Rebecca Snyder, NMNH || [https://drive.google.com/file/d/1p6jU2UWVjAjZSKx2Fgv7CnWYsqXa0qSX/view?usp=sharing Digitisation & Mobilisation of CSIRO’s Biological Collections] <br> Nicole Fisher, CSIRO; Pete Thrall, CSIRO | | 11:00 – 11:10 || US National Science Foundation Review, Q&A || [https://drive.google.com/file/d/1dsv4T7o5_3jXn1UPVhUTlKnRE6LpC75i/view?usp=sharing EMu at the Smithsonian] <br> Michelle Brown, Smithsonian National Museum of Natural History; Beth Gamble, NMNH; Ducky Nguyen, NMNH; Rebecca Snyder, NMNH || [https://drive.google.com/file/d/1p6jU2UWVjAjZSKx2Fgv7CnWYsqXa0qSX/view?usp=sharing Digitisation & Mobilisation of CSIRO’s Biological Collections] <br> Nicole Fisher, CSIRO; Pete Thrall, CSIRO | ||
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| 11:10 – 11:20 || Specimen Digitization as Art <br> Zach Randall, Florida Museum of Natural History || 10 minutes of Q&A with database panel || [https://drive.google.com/file/d/1kKvB70BldC90ZvRny7lIm2m8L3OvqjpP/view?usp=sharing A workflow for cleaning Notes from Nature data transcriptions] <br> Peter Oboyski, Essig Museum of Entomology, UC Berkeley | | 11:10 – 11:20 || Specimen Digitization as Art <br> Zach Randall, Florida Museum of Natural History || 10 minutes of Q&A with database panel || [https://drive.google.com/file/d/1kKvB70BldC90ZvRny7lIm2m8L3OvqjpP/view?usp=sharing A workflow for cleaning Notes from Nature data transcriptions] <br> Peter Oboyski, Essig Museum of Entomology, UC Berkeley | ||
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| 11:20 – 11:30 || Histological slides and other sequentially sectioned objects in museums can be re-born digital 3D resources <br> Doug Boyer, Duke University (MorphoSource); Jocelyn Triplett, MorphoSource; Julie Winchester, MorphoSource; Jim Hanken, Harvard; Stephen Turney, Harvard; Brendan Haley, Harvard; Breda Zimkus, Harvard || [https://drive.google.com/file/d/1nzoEx6pEzBB19fxGd-RAp_ZcZUnqmhLp/view?usp=sharing Herbarium Pomeranicum] <br> Marta Jarosińska, University of Gdańsk || New data models create new challenges for data sharing: looking at collections through the lens of events <br> Ely Wallis, Atlas of Living Australia, CSIRO | | 11:20 – 11:30 || Histological slides and other sequentially sectioned objects in museums can be re-born digital 3D resources <br> Doug Boyer, Duke University (MorphoSource); Jocelyn Triplett, MorphoSource; Julie Winchester, MorphoSource; Jim Hanken, Harvard; Stephen Turney, Harvard; Brendan Haley, Harvard; Breda Zimkus, Harvard || [https://drive.google.com/file/d/1nzoEx6pEzBB19fxGd-RAp_ZcZUnqmhLp/view?usp=sharing Herbarium Pomeranicum] <br> Marta Jarosińska, University of Gdańsk || [https://drive.google.com/file/d/1-w1ApEpvCleUiBc3woxFHok5UeZxcIj6/view?usp=sharing New data models create new challenges for data sharing: looking at collections through the lens of events] <br> Ely Wallis, Atlas of Living Australia, CSIRO | ||
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| 11:30 – 11:40 || [https://drive.google.com/file/d/12fasHyr1AsvhZuQHIdQUdj-ichF1ZgYP/view?usp=sharing Extending the Digital Extended Specimen] <br> Amanda Harmon, A.C. Moore Herbarium (USCH); Csilla Czako, South Carolina Department of Natural Resources; Avery Browning, University of South Carolina School of Earth, Ocean, and Environment; Herrick, Brown, A.C. Moore Herbarium (USCH) | | 11:30 – 11:40 || [https://drive.google.com/file/d/12fasHyr1AsvhZuQHIdQUdj-ichF1ZgYP/view?usp=sharing Extending the Digital Extended Specimen] <br> Amanda Harmon, A.C. Moore Herbarium (USCH); Csilla Czako, South Carolina Department of Natural Resources; Avery Browning, University of South Carolina School of Earth, Ocean, and Environment; Herrick, Brown, A.C. Moore Herbarium (USCH) | ||
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| 11: 50 – 12:00 || [https://drive.google.com/file/d/1GMZOPZha27Nm-NMlgctIa7XyGX3eP7VU/view?usp=sharing A Fully Digitized Herbarium - Workflows to Keep Up 100%] <br> Sylvia Orli, Smithsonian Institution; Ingrid Lin, Smithsonian Institution; Nathan Anderson, Smithsonian Institution|| [https://drive.google.com/file/d/1saJuXqKWLjy1aH8bEgfEOf4rR4e9BJNW/view?usp=sharingArcGIS Online for born digital data: our experience 6 months in] <br> | | 11: 50 – 12:00 || [https://drive.google.com/file/d/1GMZOPZha27Nm-NMlgctIa7XyGX3eP7VU/view?usp=sharing A Fully Digitized Herbarium - Workflows to Keep Up 100%] <br> Sylvia Orli, Smithsonian Institution; Ingrid Lin, Smithsonian Institution; Nathan Anderson, Smithsonian Institution|| [https://drive.google.com/file/d/1saJuXqKWLjy1aH8bEgfEOf4rR4e9BJNW/view?usp=sharingArcGIS Online for born digital data: our experience 6 months in] <br> | ||
Rick Levy, Denver Botanic Gardens; Michelle DePrenger-Levin, Denver Botanic Gardens | Rick Levy, Denver Botanic Gardens; Michelle DePrenger-Levin, Denver Botanic Gardens | ||
|| DAM it All: Media Metadata and Asset Management Across the Museum <br> Alyson Wilkins, Natural History Museum of Utah | || [https://drive.google.com/file/d/1AF48Z-jq0PxxR0JXY9XfNLFaslOsWW1D/view?usp=sharing DAM it All: Media Metadata and Asset Management Across the Museum] <br> Alyson Wilkins, Natural History Museum of Utah | ||
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| 12:00 – 12:10 || [https://drive.google.com/file/d/1vDtpYaadPyEVFF0I_ESNgHZe3JfzuJdD/view?usp=sharing Digitizing the USNM dragonfly and damselfly collection] <br> | | 12:00 – 12:10 || [https://drive.google.com/file/d/1vDtpYaadPyEVFF0I_ESNgHZe3JfzuJdD/view?usp=sharing Digitizing the USNM dragonfly and damselfly collection] <br> | ||
Torsten Dikow, Smithsonian National Museum of Natural History (USNM), Department of Entomology; Jessica Bird, USNM, Department of Entomology; Erin Kolski, USNM, Department of Entomology; Jeanine Nault, Smithsonian Digitization Program Office; Peter Grisafi, Picturae | Torsten Dikow, Smithsonian National Museum of Natural History (USNM), Department of Entomology; Jessica Bird, USNM, Department of Entomology; Erin Kolski, USNM, Department of Entomology; Jeanine Nault, Smithsonian Digitization Program Office; Peter Grisafi, Picturae | ||
|| [https://drive.google.com/file/d/1XDf9UFZznL9LxvNM6rOodA-R7UmpFGQY/view?usp=sharing Introducing taxastand and dwctaxon, a pair of R packages for standardizing species names in Darwin Core format] <br> Joel Nitta, The University of Tokyo; Wataru Iwasaki, The University of Tokyo || Reading Others’ Herbarium Specimen Barcodes During Mass Digitization Projects <br> David Shorthouse, Agriculture & Agri-Food Canada; Shannon Asencio, Agriculture & Agri-Food Canada | || [https://drive.google.com/file/d/1XDf9UFZznL9LxvNM6rOodA-R7UmpFGQY/view?usp=sharing Introducing taxastand and dwctaxon, a pair of R packages for standardizing species names in Darwin Core format] <br> Joel Nitta, The University of Tokyo; Wataru Iwasaki, The University of Tokyo || [https://drive.google.com/file/d/19KKYF89CqJ1iUd_Or2dnys4z5JUmLLmF/view?usp=sharing [https://drive.google.com/file/d/19KKYF89CqJ1iUd_Or2dnys4z5JUmLLmF/view?usp=sharing Reading Others’ Herbarium Specimen Barcodes During Mass Digitization Projects] <br> David Shorthouse, Agriculture & Agri-Food Canada; Shannon Asencio, Agriculture & Agri-Food Canada | ||
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| 12:10 – 12:20 || Creation of the NMNH Informatics and Data Science Center <br> Rebecca Snyder, Smithsonian National Museum of Natural History || Digi-Leap: Connecting Novel Tools, Machine Learning and Public Participation to Label Digitization Efforts <br> Robert Guralnick, University of Florida; Michael Denslow, University of Florida; Julie Allen, University of Nevada, Reno; Samantha Blickhan, Zooniverse & Adler Planetarium; Raphael LaFrance, University of Florida; Mark Bouslog, Zooniverse & Adler Planetarium; Sean Miller, Zooniverse & Adler Planetarium || [https://drive.google.com/file/d/1Lzf0jegvQFTBpNfbviGekmJzyzWmn2md/view?usp=sharing Integrating Wikidata into collection management software] <br> | | 12:10 – 12:20 || Creation of the NMNH Informatics and Data Science Center <br> Rebecca Snyder, Smithsonian National Museum of Natural History || Digi-Leap: Connecting Novel Tools, Machine Learning and Public Participation to Label Digitization Efforts <br> Robert Guralnick, University of Florida; Michael Denslow, University of Florida; Julie Allen, University of Nevada, Reno; Samantha Blickhan, Zooniverse & Adler Planetarium; Raphael LaFrance, University of Florida; Mark Bouslog, Zooniverse & Adler Planetarium; Sean Miller, Zooniverse & Adler Planetarium || [https://drive.google.com/file/d/1Lzf0jegvQFTBpNfbviGekmJzyzWmn2md/view?usp=sharing Integrating Wikidata into collection management software] <br> | ||
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| 12:20 – 12:30 || [https://drive.google.com/file/d/18euYMDtafOkzmOIPu2T6l53KKb0LsJpN/view?usp=sharing What does digitizing fossils in situ mean for museum collections and our data ecosystem?] <br> | | 12:20 – 12:30 || [https://drive.google.com/file/d/18euYMDtafOkzmOIPu2T6l53KKb0LsJpN/view?usp=sharing What does digitizing fossils in situ mean for museum collections and our data ecosystem?] <br> | ||
Holly Little, Smithsonian Institution; Jessica Nakano, Smithsonian Institution; Nick Pyenson, Smithsonian Institution | Holly Little, Smithsonian Institution; Jessica Nakano, Smithsonian Institution; Nick Pyenson, Smithsonian Institution | ||
|| Once Upon a Time, in TaxonWorks <br><br> Matthew Yoder, Deborah Paul, Species File Group, INHS, University of Illinois; Tommy McElrath, INHS Insect Collection, University of Illinois; José Luis Pereira, División Entomología, Museo de La Plata, UNLP, Argentina || | || [https://drive.google.com/file/d/17n455sp3aOSdXqaXQ3Tu4bFK6jxzXSaj/view?usp=sharing Once Upon a Time, in TaxonWorks] <br><br> Matthew Yoder, Deborah Paul, Species File Group, INHS, University of Illinois; Tommy McElrath, INHS Insect Collection, University of Illinois; José Luis Pereira, División Entomología, Museo de La Plata, UNLP, Argentina || | ||
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| ''12:30 - 1:30'' || colspan="3"|''Lunch'' | | ''12:30 - 1:30'' || colspan="3"|''Lunch'' | ||