Fluid Preserved Invertebrate Imaging: Difference between revisions

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Fluid Preserved Invertebrate Imaging (view source)

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==[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]==
==[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]==
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==[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]==
==[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]==
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==[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report]==
==[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report]==
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==[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki]==
==[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki]==
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==Workshop Agenda and Logistics==
==Workshop Agenda and Logistics==
*[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Tentative Workshop Outline]
*[[Media:InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf|Tentative Workshop Outline]]
*[https://www.idigbio.org/wiki/images/a/a6/Logistics_shuttle_meals.pdf Shuttle info, hotel assignments, and meal plan]
*[[Media:Logistics_shuttle_meals.pdf|Shuttle info, hotel assignments, and meal plan]]
*[https://www.idigbio.org/wiki/images/6/61/Invert_Imaging_Workshop_Participants_Email.pdf A few last-minute logistical details (text of e-mail, 2013-09-04)]
*[[Media:Invert_Imaging_Workshop_Participants_Email.pdf|A few last-minute logistical details (text of e-mail, 2013-09-04)]]
*[http://uunions.umich.edu/league/inn/ Information about Michigan League]
*[http://uunions.umich.edu/league/inn/ Information about Michigan League]
*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel]
*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel]
*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League]
*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League]
*[https://www.idigbio.org/wiki/images/3/3c/Leaguemap.pdf Downloadable pdf map from Bell Tower to Michigan League]
*[[Media:Leaguemap.pdf|Downloadable pdf map from Bell Tower to Michigan League]]
*[https://www.idigbio.org/wiki/images/1/1c/Central_large.pdf U. Michigan Campus map]
*[[Media:Central_large.pdf|U. Michigan Campus map]]
*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology]
*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology]


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==Presentations==
==Presentations==


*[https://www.idigbio.org/wiki/images/0/03/IDigBio_Intro.pdf Introduction to iDigBio, Gil Nelson]  
*[[Media:IDigBio_Intro.pdf|Introduction to iDigBio, Gil Nelson] ]
*[https://www.idigbio.org/wiki/images/0/04/Brantley_InvertImaging_2013.pdf Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]
*[[Media:Brantley_InvertImaging_2013.pdf|Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]]
*[https://www.idigbio.org/wiki/images/3/33/DIY_Techniques.pdf DIY Techniques, Mark O'Brien]
*[[Media:DIY_Techniques.pdf|DIY Techniques, Mark O'Brien]]
*[https://www.idigbio.org/wiki/images/8/87/Patrick_spider_imaging.pdf Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]
*[[Media:Patrick_spider_imaging.pdf|Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]]
*[https://www.idigbio.org/wiki/images/3/30/Scanning_Microscope_Slides_Oboyski.pdf Scanning Microscope Slides, Peter Oboyski]
*[[Media:Scanning_Microscope_Slides_Oboyski.pdf|Scanning Microscope Slides, Peter Oboyski]]
*[https://www.idigbio.org/wiki/images/7/77/Naturalis_microscopic_slides.pdf Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]
*[[Media:Naturalis_microscopic_slides.pdf|Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]]
*[https://www.idigbio.org/wiki/images/d/d7/Hand_sanitizer_Droege.pdf Macro photography in hand sanitizer, Sam Droege]
*[[Media:Hand_sanitizer_Droege.pdf|Macro photography in hand sanitizer, Sam Droege]]
*[https://www.idigbio.org/wiki/images/2/24/Final_Stephanie_Ware_02.pdf Slide imaging at the Field Museum, Stphanie Ware]
*[[Media:Final_Stephanie_Ware_02.pdf|Slide imaging at the Field Museum, Stphanie Ware]]
*[https://www.idigbio.org/wiki/images/7/73/IDIGBIO_WORKING.pdf Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith]
*[[Media:IDIGBIO_WORKING.pdf|Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith]]
*[https://www.idigbio.org/wiki/images/2/24/Brilmyer_idig_bio.pdf Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer]
*[[Media:Brilmyer_idig_bio.pdf|Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer]]
*[https://www.idigbio.org/wiki/images/b/b2/Hedin_iDigBio_presentation.pdf Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]
*[[Media:Hedin_iDigBio_presentation.pdf|Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]]
*[https://www.idigbio.org/wiki/images/6/62/Selden.pdf Imaging techniques in the study of fossil spiders, Paul Selden]
*[[Media:Selden.pdf|Imaging techniques in the study of fossil spiders, Paul Selden]]
*[https://www.idigbio.org/wiki/images/3/3a/Lightroom_presentation.pdf Processing images with Lightroom, Rich Rabeler]
*[[Media:Lightroom_presentation.pdf|Processing images with Lightroom, Rich Rabeler]]
*[https://www.idigbio.org/wiki/images/2/28/Imaging_Vic_Smith.pdf Fluid-preserved imaging, Roy Larimer]
*[[Media:Imaging_Vic_Smith.pdf|Fluid-preserved imaging, Roy Larimer]]
*[https://www.idigbio.org/wiki/images/8/89/Paul_Selden_Protocol.pdf Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]


== Workshop Recordings ==
== Workshop Recordings ==
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==Images for Review==
==Images for Review==
*[https://www.idigbio.org/wiki/images/7/72/08-10-29_Erig_blaesa2_comp.jpg Spider from Sandy Brantley 1]
*[[Media:08-10-29_Erig_blaesa2_comp.jpg|Spider from Sandy Brantley 1]]
*[https://www.idigbio.org/wiki/images/0/04/Xy_cu_07-12-20_114944_R8_S4.jpg Spider from Sandy Brantley 2]
*[[Media:Xy_cu_07-12-20_114944_R8_S4.jpg|Spider from Sandy Brantley 2]]


==Documentation==
==Documentation==
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*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)]
*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)]
*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)]
*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)]
*[https://www.idigbio.org/wiki/images/1/10/How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]
*[[Media:How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images]
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images]
*[https://www.idigbio.org/wiki/images/5/51/Leica_Imaging_Manual_July1_2013.pdf LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer]
*[[Media:Leica_Imaging_Manual_July1_2013.pdf|LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer]]
*[https://www.idigbio.org/wiki/images/a/aa/Ant_Databasing_Protocols_August.pdf Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]
*[[Media:Ant_Databasing_Protocols_August.pdf|Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]]
*[https://www.idigbio.org/wiki/images/8/89/Paul_Selden_Protocol.pdf Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]


==Workflow Documents==
==Workflow Documents==
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*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images]
*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images]
*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page]
*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page]
*[https://www.idigbio.org/wiki/index.php/Dried_Insect_Digitization_Workshop Pinned insect digitization workshop, Chicago, Spring 2013]
*[Dried Insect Digitization Workshop|Pinned insect digitization workshop, Chicago, Spring 2013]]
*[https://www.idigbio.org/wiki/index.php/Wet_Collections_Digitization_Workshop Wet collections digitization wiki, U. Kansas, March 2013]
*[Wet Collections Digitization Workshop|Wet collections digitization wiki, U. Kansas, March 2013]]
*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy]
*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy]
*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu]
*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu]
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