Wet Collections Digitization Workshop: Difference between revisions

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==This wiki contains materials supporting iDigBio's wet collections digitization workshop held at University of Kansas, March 5-6, 2013. Included are links to resources, outlines, and training materials related to digitizing wet collections. Other important tools and resources are available from the Digitization Resources main page, accessed from the first link below.<br /><br />==


==[https://www.idigbio.org/wiki/index.php/Digitization_Resources Digitization Resources Wiki Home]==
{| class="wikitable" style="float:right;"
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! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Wet Collections Digitization Workshop
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| colspan="2" style="text-align:center;font-size:7pt" | <!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE-->[[File: Wet_Collections_Digitization_Workshop_logo.PNG‎|center|300px| ]]<br />
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!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Wet Collections Digitization Workshop
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|[https://www.idigbio.org/wiki/images/e/ee/Agenda_WetCollections.pdf Wet Collections Digitization Workshop Agenda]
|-
|[https://www.idigbio.org/biblio?f%5bkeyword%5d=271 Wet Collections Digitization Workshop Biblio Entries]
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|[https://www.idigbio.org/content/wet-collections-digitization-workshop-report Wet Collections Digitization Workshop Report]
|}
 
[[Category:Workshop]]
==This wiki contains materials supporting iDigBio's wet collections digitization workshop held at University of Kansas, March 5-6, 2013. Included are links to resources, outlines, and training materials related to digitizing wet collections. Other important tools and resources are available from the Digitization Resources main page, accessed from the first link below.==
 
==Digitization Resources Wiki Home==
*[[Digitization Resources|Digitization Resources Wiki Home]]
 
==Report==
*[https://www.idigbio.org/content/wet-collections-digitization-workshop-report Wet Collections Digitization Workshop Report]
 
==Photos==
*[https://www.facebook.com/media/set/?set=a.520677307976220.1073741825.215120891865198&type=3 Workshop Facebook Photo Album]


==Wet Collections Digitization Workshop==
==Wet Collections Digitization Workshop==
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==Workshop Logistics==
==Workshop Logistics==
* [https://www.idigbio.org/wiki/images/4/4e/WetCollectionsWorkshop_Logistics.pdf Workshop Logistics Document]
* [[Media:WetCollectionsWorkshop_Logistics.pdf|Workshop Logistics Document]]
*[https://www.idigbio.org/wiki/images/4/45/LawrenceRestaurants.pdf Where to Eat in Lawrence]
* [[Media:LawrenceRestaurants.pdf|Where to Eat in Lawrence]]
* [https://www.idigbio.org/wiki/images/b/b6/Lawrence.jpg Map of Lawrence]
* [[Media:Lawrence.jpg|Map of Lawrence]]


==Workshop Agendas and Notes==
==Workshop Agendas and Notes==
* [https://www.idigbio.org/wiki/images/e/ee/Agenda_WetCollections.pdf Workshop Agenda]
* [[Media:Agenda_WetCollections.pdf|Workshop Agenda]]
* [https://www.idigbio.org/wiki/images/2/26/IDigBio_wet_collection_workshop_demonstration_stations.pdf Tours and Demonstrations Schedule]
* [https://vimeo.com/album/2298842 Workshop Recordings]
* [[Media:IDigBio_wet_collection_workshop_demonstration_stations.pdf|Tours and Demonstrations Schedule]]
* [http://tinyurl.com/WetNotes1 Collaborative notes page, 5 March]
* [http://tinyurl.com/WetNotes1 Collaborative notes page, 5 March]
* [http://tinyurl.com/WetNotes2 Collaborative notes page, 6 March]
* [http://tinyurl.com/WetNotes2 Collaborative notes page, 6 March]


==Getting Started with Wet Collections Digitization==
==Getting Started with Wet Collections Digitization==
*[https://www.idigbio.org/wiki/images/e/e1/Wet_collections_getting_started.pdf Getting Started with Wet Collections Digitization (pdf of ppt by Gil Nelson)]
* [[Media:Wet_collections_getting_started.pdf|Getting Started with Wet Collections Digitization (pdf of ppt by Gil Nelson)]]
*[https://www.idigbio.org/wiki/images/0/09/CAJohnson_iDigBioWetDigit.pdf Getting Started at AMNH, Chris Johnson]
* [[Media:CAJohnson_iDigBioWetDigit.pdf|Getting Started at AMNH, Chris Johnson]]
*[https://www.idigbio.org/wiki/images/d/d3/Brantley_KU_March_2013.pdf Emergence of SCAN, Sandy Brantley, U. New Mexico]
* [[Media:Brantley_KU_March_2013.pdf|Emergence of SCAN, Sandy Brantley, U. New Mexico]]
*[https://www.idigbio.org/wiki/images/5/5a/Bjork_InterdisciplinaryExchange_iDigBioMarch2013.pdf Interdisciplinary Exchange, Sally Bjork, U. Michigan]
* [[Media:Bjork_InterdisciplinaryExchange_iDigBioMarch2013.pdf|Interdisciplinary Exchange, Sally Bjork, U. Michigan]]


==Imaging Wet Collections==
==Imaging Wet Collections==
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/C_Taylor_InvertNet_imaging.pdf Imaging with InvertNet's Robot Chris Taylor, Illinois Natural History Survey]
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/Monahan_35mm_Slides.pdf Digitizing 35mm Slides, Laura Halverson Monahan, U. Wisconsin, Madison]
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/Mark_SabajPerez.pdf Imaging Fishes (workshop presentation), Mark SabajPerez, Academy of Natural Sciences, Philadelphia/Drexel University]
* [http://silurus.ansp.org/ACSI/corresp/digital_imaging_tips.html Digital Imaging Tips (Mark Sabaj and Kyle Luckenbill)]
* [http://silurus.ansp.org/ACSI/corresp/digital_imaging_tips.html Digital Imaging Tips (Mark Sabaj and Kyle Luckenbill)]
* [http://silurus.ansp.org/ACSI/corresp/digital_imaging.html Guidelines & Suggestions for Image Capture of Catfishes and Type Specimens (Mark Sabaj)]
* [http://silurus.ansp.org/ACSI/corresp/digital_imaging.html Guidelines & Suggestions for Image Capture of Catfishes and Type Specimens (Mark Sabaj)]
* [http://silurus.ansp.org/ACSI/corresp/digital_imaging_tips2.html Image Manipulation Using Adobe Photoshop (version 7) (Luckenbill and Sabaj)]
* [http://silurus.ansp.org/ACSI/corresp/digital_imaging_tips2.html Image Manipulation Using Adobe Photoshop (version 7) (Luckenbill and Sabaj)]
* [https://www.idigbio.org/wiki/images/d/d1/SabajPerez_2009_textonly.pdf PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (text only) ]
* [[Media:SabajPerez_2009_textonly.pdf|PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (text only) ]]
* [https://www.idigbio.org/wiki/images/1/17/SabajPerez_2009.pdf PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (with images; LARGE pdf, ~43MB) ]
* [[Media:SabajPerez_2009.pdf|PHOTOGRAPHIC ATLAS OF FISHES OF THE GUIANA SHIELD (with images; LARGE pdf, ~43MB) ]]
* [http://www.mcz.harvard.edu/Departments/Ichthyology/fish_imaging.html Museum of Comparative Zoology Ichthyology Department Imaging Equipment Specifications]
* [http://www.mcz.harvard.edu/Departments/Ichthyology/fish_imaging.html Museum of Comparative Zoology Ichthyology Department Imaging Equipment Specifications]
* [http://www.eboxbio.com/ Photo EBox Imaging Station]
* [http://www.eboxbio.com/ Photo EBox Imaging Station]
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==Image Processing==
==Image Processing==
* [https://www.idigbio.org/wiki/index.php/File:Luckenbill_Wet_Collections_image_editing.pdf Image Processing for Wet Collections, Kyle Luckenbill]
* [[Media:Luckenbill_Wet_Collections_image_editing.pdf|Image Processing for Wet Collections, Kyle Luckenbill]]
*[https://www.idigbio.org/wiki/images/7/7a/Photoshop_CS6_tutorial.pdf Photoshop CS6 Tutorila, Kyle Luckenbill]
* [[Media:Photoshop_CS6_tutorial.pdf|Photoshop CS6 Tutorila, Kyle Luckenbill]]
 
==Georeferencing==
*[https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/WetCollections/iDigBio_WetCollections_GEOLocateOverview.pdf Georeferencing Natural History Collections, Nelson Rios, Tulane]


==Identifiers, Databases, and Sharing Data==
==Identifiers, Databases, and Sharing Data==
*[https://www.idigbio.org/content/biological-collections-databases iDigBio's Database, Portals, Aggregators, and Tools Review Page]
* [https://www.idigbio.org/content/biological-collections-databases iDigBio's Database, Portals, Aggregators, and Tools Review Page]
*[https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/SharingData2.pptx It's About Data: Identifiers, Darwin Core, Sharing Data, Choosing a Database, Digitization Maturity (pptx by Deborah Paul, Greg Riccardi, Joanna McCaffrey)]
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/SharingData2.pptx It's About Data: Identifiers, Darwin Core, Sharing Data, Choosing a Database, Digitization Maturity (pptx by iDigBio's Deborah Paul, Greg Riccardi, Joanna McCaffrey)]
*[https://www.idigbio.org/wiki/images/9/97/SharingData2.pdf Its About Data, Deb Paul, pdf version]
* [[Media:SharingData2.pdf|It's About Data, Deb Paul, pdf version]]
*[http://openrefine.org/ Link to the OpenRefine.org website for data cleaning tools]
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/CleaningData.pptx Data Cleaning, Validation and Enhancement, Deborah Paul, iDigBio]
8[https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/Bentley_iDigBio.pdf Specify, Andy Bentley, U. Kansas]
**Use this power point and the notes in it to experiment with Open Refine - a powerful tool for cleaning up data, validating values and enhancing existing data.
** [http://openrefine.org/ Link to the OpenRefine.org website for data cleaning tools]
** [https://plus.google.com/u/0/communities/117280693504889048168 Open Refine Google+ Community] for users of Open Refine. Started by a participant of this Wet Collections Workshop. Join us!
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/WetCollections/BentleyiDigBio.pptx Power Point of Andy Bentley's presentation]
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/Bentley_iDigBio.pdf Specify, Andy Bentley, U. Kansas]
* [https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/Symbiota_2013-03-06.pdf Symbiota, FilteredPush, and Other Tools, Ed Gilbert, Arizona State]
 
==Pre-digitization Curation==
 
*[https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/Robins_Pre_digitization_Curation_in_Fluid_Collections_Final.pdf Pre-digitization Curation for Fluid Collections, Rob Robbins, Florida Museum of Natural History]


==Workflows==
==Workflows==
* [https://www.idigbio.org/wiki/images/8/83/Digitization_Workflows_wet_collections.pdf Introduction to Digitization Workflows for Wet Collections (pdf of ppt by Gil Nelson)]
* [[Media:Digitization_Workflows_wet_collections.pdf|Introduction to Digitization Workflows for Wet Collections (pdf of ppt by Gil Nelson)]]
*[https://www.idigbio.org/wiki/images/4/49/OregonStateIchthyology_CatalogDigitization_Sidlauskas.pdf PDF of Brian Sidlauskas' presentation on digitizing textual data from the historic card catalog at the Oregon State Ichthyology Collection]
* [[Media:OregonStateIchthyology_CatalogDigitization_Sidlauskas.pdf|PDF of Brian Sidlauskas' presentation on digitizing textual data from the historic card catalog at the Oregon State Ichthyology Collection, Brian Sidlauskas]]
* [https://www.idigbio.org/wiki/images/8/80/OregonStateIchthyology_CatalogDigitization_Workflows.pdf Workflow for entering textual data from the historic card catalog at the Oregon State Ichthyology Collection into Specify 6, including appendices on creating retroactive field numbers and standardizing drainage designations in Oregon]
* [[Media:OregonStateIchthyology_CatalogDigitization_Workflows.pdf|Workflow for entering textual data from the historic card catalog at the Oregon State Ichthyology Collection into Specify 6, including appendices on creating retroactive field numbers and standardizing drainage designations in Oregon, Brian Sidlauskas]]
*[https://www.idigbio.org/wiki/images/b/b6/Bjork_Workflow_iDigBio_March2013r.pdf Go With the Flow, Sally Bjork, U. Michigan]
* [[Media:Bjork_Workflow_iDigBio_March2013r.pdf|Go With the Flow, Sally Bjork, U. Michigan]]
*[https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/WetCollections/ShortPDFbackup.pdf Digitizing Field Books and Collecting Events, Andrew Short, U. Kansas]
*[https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/WetCollections/ShortPDFbackup.pdf Digitizing Field Books and Collecting Events, Andrew Short, U. Kansas]
*[https://www.idigbio.org/sites/default/files/workshop-presentations/wetcollections/Cohen_FINAL.pdf Fishes of Texas Project: Specimen Imaging, Adam Cohen]

Latest revision as of 16:55, 3 February 2015

Wet Collections Digitization Workshop
Wet Collections Digitization Workshop logo.PNG

Quick Links for Wet Collections Digitization Workshop
Wet Collections Digitization Workshop Agenda
Wet Collections Digitization Workshop Biblio Entries
Wet Collections Digitization Workshop Report

This wiki contains materials supporting iDigBio's wet collections digitization workshop held at University of Kansas, March 5-6, 2013. Included are links to resources, outlines, and training materials related to digitizing wet collections. Other important tools and resources are available from the Digitization Resources main page, accessed from the first link below.

Digitization Resources Wiki Home

Report

Photos

Wet Collections Digitization Workshop

Workshop Logistics

Workshop Agendas and Notes

Getting Started with Wet Collections Digitization

Imaging Wet Collections

Imaging Equipment

Image Processing

Georeferencing

Identifiers, Databases, and Sharing Data

Pre-digitization Curation

Workflows