Small Herbarium Workshop FSU: Difference between revisions
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'''This wiki provides resources for the Small Herbarium Digitization Workshop at Florida State University, 9-12 December 2013''' | '''This wiki provides resources for the Small Herbarium Digitization Workshop at Florida State University, 9-12 December 2013''' | ||
{| class="wikitable" style="float:right;" | |||
! colspan="2" style="background:#D58B28;width:300px;font-size:10pt" | Small Herbaria Workshop | |||
|- | |||
| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE-->[[Image: Mobilizing_Small_Herbaria_logo.PNG|center|400px| Mobilizing_Small_Herbaria_logo.PNG]]<br /> | |||
|- | |||
!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Small Herbaria Workshop | |||
|- | |||
|[https://www.idigbio.org/wiki/images/2/2f/Agenda_SmallHerbWorkshopFSU.pdf Small Herbaria Workshop Agenda] | |||
|- | |||
|[https://www.idigbio.org/biblio?f%5bkeyword%5d=273 Small Herbaria Workshop Biblio Entries] | |||
|- | |||
|[https://www.idigbio.org/content/mobilizing-small-herbaria-workshop-attracts-enthusiastic-participants Small Herbaria Workshop Report] | |||
|} | |||
==[https://www.idigbio.org/wiki/index.php/Digitization_Resources Digitization Resources Wiki Home]== | ==[https://www.idigbio.org/wiki/index.php/Digitization_Resources Digitization Resources Wiki Home]== | ||
==[https://www.idigbio.org/content/mobilizing-small-herbaria-workshop-attracts-enthusiastic-participants Mobilizing Small Herbaria Workshop Report]== | |||
==Agenda and Logistics== | ==Agenda and Logistics== | ||
*[https://docs.google.com/document/d/ | * [[Media:Agenda_SmallHerbWorkshopFSU.pdf|Tentative Draft Agenda]] | ||
* [[Media:Logistics.pdf|Workshop Logistics]] | |||
* [[Media:E-mail_Number_One.pdf|Informational e-mail number one]] | |||
*[http://www.visittallahassee.com/ VisitTallahassee.com] | |||
*[http://www.visittallahassee.com/uploads/filebrowser/files/HTML_ICON_visitors_guide_2014/index.html Online Visitor's Guide to Tallahassee] | |||
*[http://www.andrewsdowntown.com/ Andrew's Downtown (restaurant)] | |||
* [[Media:Downtown_and_Gaines_St._dining.pdf|Map of downtown and Gaines Street dining options]] | |||
*Bread & Roses: Vegan/vegetarian restaurant, new, very good quiche! noon-4ish. 915-2 Railroad Ave., about a block from Residence. | |||
==Report== | |||
*[https://www.idigbio.org/content/mobilizing-small-herbaria-workshop-attracts-enthusiastic-participants Small Herbarium Workshop Report] | |||
==Photos== | |||
*[https://www.facebook.com/media/set/?set=a.643267595717190.1073741832.215120891865198&type=3 Workshop Facebook Photo Album] | |||
==Collaborative Notes and Communication== | |||
*[https://docs.google.com/document/d/15Vbol8mQ1xuMa4rzueC8NwN7Xpew6vcGI5_I6rbFpAA/edit?usp=sharing Collaborative Notes Doc] | |||
*Small Herbaria Workshop Twitter hash tag #smallherb | |||
*Attend Remotely: http://idigbio.adobeconnect.com/smallherb | |||
==Presentations== | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Mast_small_herbarium_workshop_9Dec13.pdf The FSU experience] Austin Mast | |||
* [[Media:Helen-_Salem_College_Herbarium_florida_presentation.pdf|The Salem College Herbarium]] Helen Fowowe | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/The%20VSU%20Experience.pdf The Valdosta State Herbarium (VSC) Experience] Richard Carter | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Kari%20Harris_iDigBio%20Small%20Herbaria%20Digitization%20Workshop_December%202013.pdf The Arkansas State Herbarium Experience] Kari Harris | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/monfils-digi-cmu.pdf The CSC Herbarium Experience] Anna Monfils | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/TheFairmontStateExperience.pptx The Fairmont State Experience] Donald E. Trisel | |||
*[Specify collections management software] Andy Bentley | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/InstallSpecify.pdf Installing Specify from script] Theresa Miller | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Symbiota_2013-12-09_3.pdf Symbiota] Ed Gilbert | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Photography101_0.pdf Photography 101 for Small Herbaria] Joanna McCaffrey | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Specimen_Digitization_Photo-eBox_Watson.pdf Setting up an imaging station:NYBG style] Kim Watson | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Image_Editing_Lightroom_Watson.pdf Using Lightroom to manage image processing workflows] Kim Watson | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Using%20Label%20Merge.pdf Creating herbarium labels with mail merge in Word] Richard Carter | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Pre%20digitization%20curation.pdf Predigitization curation] Richard Carter | |||
*[Accessing your Symbiota node and entering data] Ed Gilbert | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/GeoreferencingChoices.pptx Georeferencing Choices] [pptx] Deborah Paul | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/OCRoverview.pptx OCR, it's not just for parsing! Think Sort.] [pptx] Deborah Paul | |||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Got(messy)data.pptx Got (messy) data? Try Open Refine ] [pptx] Deborah Paul | |||
==Workflow Documents== | ==Workflow Documents== | ||
* [ | * [[Media:Imaging_Protocol_v5b.pdf|Florida State University Herbarium Imaging Protocol]] | ||
* [ | * [[Media:VSUImagingProtocol.pdf|Valdosta State University Herbarium (VSC) Vascular Plant Imaging Protocol]] | ||
* [ | * [[Media:VSU_Bryophyte_Imaging_Protocol.pdf|Valdosta State Herbarium (VSC) Bryophyte Packet Imaging Protocol]] | ||
* [ | * [[Media:Image_Dust_Off_Protocol_for_Nikon_Cameras.pdf|Valdosta Herbarium image processing with Nikon Dust Off process included]] | ||
*[http://www.pensoft.net/journals/zookeys/article/3125/abstract/increasing-the-efficiency-of-digitization-workflows-for Increasing the efficiency of digitization workflows for herbarium specimens, Tulig M, Tarnowsky N, Bevans M, et al] | *[http://www.pensoft.net/journals/zookeys/article/3125/abstract/increasing-the-efficiency-of-digitization-workflows-for Increasing the efficiency of digitization workflows for herbarium specimens, Tulig M, Tarnowsky N, Bevans M, et al] | ||
==iDigBio's Flat Sheets and Packets Working Group Workflows== | |||
*[https://www.idigbio.org/sites/default/files/sites/default/files/Module_1_Pre-digitization_Curation_Tasks_0.pdf Module 1 Pre-digitization Curation Tasks] | |||
*[https://www.idigbio.org/sites/default/files/sites/default/files/Module_2_Imaging_Station_Setup_Camera.pdf Module 2: Imaging station setup for camera stations] | |||
*[https://www.idigbio.org/sites/default/files/sites/default/files/Module_3_Imaging_Station_Setup_Scanner_0.pdf Module 3: Imaging station setup for scanners] | |||
*[https://www.idigbio.org/sites/default/files/sites/default/files/Module_4_Imaging_Tasks_0.pdf Module 4: Imaging tasks] | |||
*[https://www.idigbio.org/sites/default/files/sites/default/files/Module_5_Image_Processing_Tasks_(Rev2012-11-07).pdf Module 5: Image processing] | |||
*[https://www.idigbio.org/sites/default/files/sites/default/files/Module_6_Data_Capture.pdf Module 6: Data capture] | |||
==Imaging Equipment== | ==Imaging Equipment== | ||
*[https://www.idigbio.org/sites/default/files/sites/default/files/2012_NYBG_Imaging_Equipment_Specifications_0.pdf NYBG Herbarium Imaging and Equipment Specifications] | *[https://www.idigbio.org/sites/default/files/sites/default/files/2012_NYBG_Imaging_Equipment_Specifications_0.pdf NYBG Herbarium Imaging and Equipment Specifications] | ||
*[https://www.idigbio.org/sites/default/files/workshop-presentations/iDigBioImagingEquipmentRecommendations3.0.pdf Imaging Equipment Recommendations (shopping list)] | |||
* [[Media:Nikon_Cameras_and_Related_Copy_Stand.pdf|Nikon cameras and a related copy stand and lights]] | |||
*[https://www.idigbio.org/content/idigbio-imaging-equipment-recommendations Imaging Equipment Recommendations for Small Herbaria] | |||
*[http://www.pnwherbaria.org/documentation/specimenimaging.php Pacific Northwest Herbaria imaging resources] | |||
==Imaging Procedures and Workflows== | ==Imaging Procedures and Workflows== | ||
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*[https://docs.google.com/file/d/0B5L2FF0VryJnMDgyNGYxOTMtYmFmNi00OTMzLTg5MzQtNGUwMzYwYzliNGQ4/edit?usp=drive_web NYBG Image editing guidelines] | *[https://docs.google.com/file/d/0B5L2FF0VryJnMDgyNGYxOTMtYmFmNi00OTMzLTg5MzQtNGUwMzYwYzliNGQ4/edit?usp=drive_web NYBG Image editing guidelines] | ||
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images] | *[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images] | ||
*[https://www.idigbio.org/sites/default/files/sites/default/files/VSU_LabelMerge.zip Valdosta State's Label Merge by Phillip Lowe] | |||
==Related Articles and Papers== | ==Related Articles and Papers== | ||
*[https://www.idigbio.org/content/streamlining-collaborative-digitization Streamlining Collaborative Digitization, Tulig & Watson, NYBG] | *[https://www.idigbio.org/content/streamlining-collaborative-digitization Streamlining Collaborative Digitization, Tulig & Watson, NYBG] | ||
* [https://www.idigbio.org/sites/default/files/sites/default/files/BeginnersGuideToImagingGlossary.pdf Beginner's Guide to Digital Imaging - Glossary] | |||
==Barcodes== | ==Barcodes== | ||
*[http:// | *[http://lbcc1.acis.ufl.edu/barcodes_overview LBCC Barcodes Overview] | ||
==Sources for Barcodes== | ==Sources for Barcodes== | ||
Latest revision as of 13:04, 22 September 2015
This wiki provides resources for the Small Herbarium Digitization Workshop at Florida State University, 9-12 December 2013
| Small Herbaria Workshop | |
|---|---|
 | |
| Quick Links for Small Herbaria Workshop | |
| Small Herbaria Workshop Agenda | |
| Small Herbaria Workshop Biblio Entries | |
| Small Herbaria Workshop Report | |
Digitization Resources Wiki Home
Mobilizing Small Herbaria Workshop Report
Agenda and Logistics
- Tentative Draft Agenda
- Workshop Logistics
- Informational e-mail number one
- VisitTallahassee.com
- Online Visitor's Guide to Tallahassee
- Andrew's Downtown (restaurant)
- Map of downtown and Gaines Street dining options
- Bread & Roses: Vegan/vegetarian restaurant, new, very good quiche! noon-4ish. 915-2 Railroad Ave., about a block from Residence.
Report
Photos
Collaborative Notes and Communication
- Collaborative Notes Doc
- Small Herbaria Workshop Twitter hash tag #smallherb
- Attend Remotely: http://idigbio.adobeconnect.com/smallherb
Presentations
- The FSU experience Austin Mast
- The Salem College Herbarium Helen Fowowe
- The Valdosta State Herbarium (VSC) Experience Richard Carter
- The Arkansas State Herbarium Experience Kari Harris
- The CSC Herbarium Experience Anna Monfils
- The Fairmont State Experience Donald E. Trisel
- [Specify collections management software] Andy Bentley
- Installing Specify from script Theresa Miller
- Symbiota Ed Gilbert
- Photography 101 for Small Herbaria Joanna McCaffrey
- Setting up an imaging station:NYBG style Kim Watson
- Using Lightroom to manage image processing workflows Kim Watson
- Creating herbarium labels with mail merge in Word Richard Carter
- Predigitization curation Richard Carter
- [Accessing your Symbiota node and entering data] Ed Gilbert
- Georeferencing Choices [pptx] Deborah Paul
- OCR, it's not just for parsing! Think Sort. [pptx] Deborah Paul
- Got (messy) data? Try Open Refine [pptx] Deborah Paul
Workflow Documents
- Florida State University Herbarium Imaging Protocol
- Valdosta State University Herbarium (VSC) Vascular Plant Imaging Protocol
- Valdosta State Herbarium (VSC) Bryophyte Packet Imaging Protocol
- Valdosta Herbarium image processing with Nikon Dust Off process included
- Increasing the efficiency of digitization workflows for herbarium specimens, Tulig M, Tarnowsky N, Bevans M, et al
iDigBio's Flat Sheets and Packets Working Group Workflows
- Module 1 Pre-digitization Curation Tasks
- Module 2: Imaging station setup for camera stations
- Module 3: Imaging station setup for scanners
- Module 4: Imaging tasks
- Module 5: Image processing
- Module 6: Data capture
Imaging Equipment
- NYBG Herbarium Imaging and Equipment Specifications
- Imaging Equipment Recommendations (shopping list)
- Nikon cameras and a related copy stand and lights
- Imaging Equipment Recommendations for Small Herbaria
- Pacific Northwest Herbaria imaging resources
Imaging Procedures and Workflows
Image Processing
- NYBG Image editing guidelines
- iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images
- Valdosta State's Label Merge by Phillip Lowe
Related Articles and Papers
- Streamlining Collaborative Digitization, Tulig & Watson, NYBG
- Beginner's Guide to Digital Imaging - Glossary