SPNHC2017 iDigBio Symposia - Advances in Digitization and Innovative Uses of Collections Data: Difference between revisions

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== General Information ==
== General Information ==


'''When:''' all day Wednesday, June 22, 2017
'''When:''' all day Wednesday, June 22, 2017<br/>
'''Where:''' [http://www.spnhc2017denver.org/ 2017 SPNHC Annual Meeting] in Denver, Colorado<br/>
'''Sponsored by:''' iDigBio and SPNHC<br/>
'''Organizers''' Shelley James and Deborah Paul


'''Where:''' [http://www.spnhc2017denver.org/ 2017 SPNHC Annual Meeting] in Denver, Colorado
'''Remote Access:''' http://idigbio.adobeconnect.com/spnhc2017_foursquare
 
'''Sponsored by:''' iDigBio and SPNHC
 
'''Organizers''' Shelley James and Deborah Paul


<p>'''Summary:''' iDigBio brings two symposia to SPNHC 2017. The first, Advances in Digitization, offers talks showcasing current trends and recent developments in the world of collections digitization. We'll hear about new strategies for scaling up and improved data quality, and get input from the herbaria, fish, and paleo collections. We'll delve into the realm of 3-D imaging, citizen science, and research librarians as collaborators. Four posters offered in this section cover digitization efficiency and crowdsourcing ideas from insect collections, to paleo. We welcome our international participants from KEW, the Museum für Naturkunde, and the MNHN.</p>
<p>'''Summary:''' iDigBio brings two symposia to SPNHC 2017. The first, Advances in Digitization, offers talks showcasing current trends and recent developments in the world of collections digitization. We'll hear about new strategies for scaling up and improved data quality, and get input from the herbaria, fish, and paleo collections. We'll delve into the realm of 3-D imaging, citizen science, and research librarians as collaborators. Four posters offered in this section cover digitization efficiency and crowdsourcing ideas from insect collections, to paleo. We welcome our international participants from KEW, the Museum für Naturkunde, and the MNHN.</p>


<p>In our second symposium, we turn to the topic of ''Innovative Uses of Collections Data.'' Many collections now have more complete species inventories, and many have more digitized collections. What can be done with this data ''in house,''to help the collections themselves? How does the aggregation of this data help collections more effectively advocate for themselves? How can it be used to for strategic planning? for advertisement? for seeking funding and setting policies? What can researchers and collections managers tell us about their georeferencing needs? From the biological field station to collections with specimens in the millions, find out what collections are learning about their own holdings - and the potential in that information.</p>
<p>In our second symposium, we turn to the topic of ''Innovative Uses of Collections Data.'' Many collections now have more complete species inventories, and many have more complete digitized specimen-level collections. What can be done with this data ''in house,''to help the collections themselves? How does the aggregation of this data help collections more effectively advocate for themselves? How can it be used to for strategic planning? for advertisement? for seeking funding and setting policies? What can researchers and collections managers tell us about their georeferencing needs? From the biological field station to collections with specimens in the millions, find out what collections are learning about their own holdings - and the potential in that information.</p>


{| class="wikitable"
{| class="wikitable"
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! style="font-weight: bold;" | Presenter, Affiliation
! style="font-weight: bold;" | Presenter, Affiliation
|-
|-
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| ADVANCES IN DIGITIZATION
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| ADVANCES IN DIGITIZATION [http://idigbio.adobeconnect.com/p46c0e27j3uv/ Symposium Recording]
|-
|-
| 1
| 1
Line 28: Line 27:
| 2
| 2
| 8:20-8:40
| 8:20-8:40
| Everyday Operational Issues Associated with Managing the Digital Collections of one of the Largest Herbaria in the World
| Everyday Operational Issues Associated with Managing the Digital Collections of one of the Largest Herbaria in the World<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/2PhillipsS.pptx Slides]
| Sarah Phillips, Royal Botanic Gardens Kew
| Sarah Phillips, Royal Botanic Gardens Kew
|-
|-
| 3
| 3
| 8:40-9:00
| 8:40-9:00
| lnteroperability between GEOLocate and Symbiota software: Collaborative georeferencing within a large scale digitization project.
| lnteroperability between GEOLocate and Symbiota software: Collaborative georeferencing within a large scale digitization project.<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/3Denslow.GeoLocateSymbiotaSPNHC2017.pptx Slides]
| Michael Denslow, Southeast Regional Network of Expertise and Collections (SERNEC)
| Michael Denslow, Southeast Regional Network of Expertise and Collections (SERNEC)
|-
|-
| 4
| 4
| 9:00-9:20
| 9:00-9:20
| Wiki-handbook of best practice and standards for 3D imaging of natural history specimens
| Wiki-handbook of best practice and standards for 3D imaging of natural history specimens<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/4Brecko%20J.pptx Slides]
| Saskia Jancke, Museum für Naturkunde Berlin
| Jonathan Brecko, SYNTHESYS3 and Royal Belgian Institute of Natural Sciences
|-
|-
| 5
| 5
| 9:20-9:40
| 9:20-9:40
| Automating 3D collection capture: Developing systems for 3D digitization at scale
| Automating 3D collection capture: Developing systems for 3D digitization at scale<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/5Blundell-Automating%203D%20collection%20capture.pptx Slides]
| Jonathan Blundell, Smithsonian Institution
| Jonathan Blundell, Smithsonian Institution
|-
|-
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| 6
| 6
| 10:00-10:20
| 10:00-10:20
| Novel Use of Inselect in Digitization of Paleontology Collections
| Novel Use of Inselect in Digitization of Paleontology Collections<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/6LutzC_smallercopy.pdf Slides]
| Christina Lutz, Yale Peabody Museum
| Christina Lutz, Yale Peabody Museum
|-
|-
| 7
| 7
| 10:20-10:40
| 10:20-10:40
| e-ReColNat: A multiparty approach
| e-ReColNat: A multiparty approach<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/7Pignal-HussonJ.pdf Slides]
| Marc Pignal, MNHN, e-ReColNat (ANR -11-INSB-0004)
| Julien Husson (MNHN, e-ReColNat), Fanny Chabas (GRAHAL), Ellen van Noort (Picturae), Marc Pignal (MNHN, e-ReColNat (ANR-11-INSB-0004))
|-
|-
| 8
| 8
| 10:40-11:00
| 10:40-11:00
| Responding to the Invisible Infrastructure: Research Libraries as Preservation Partners in the Curation of Physical Specimen Biocollections Data
| Responding to the Invisible Infrastructure: Research Libraries as Preservation Partners in the Curation of Physical Specimen Biocollections Data<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/8Laherty%20J.pptx Slides] (recording start time 2:19:25)
| Jennifer Laherty, Indiana University
| Gary Motz & Jennifer Laherty, Indiana University
|-
|-
| 9
| 9
| 11:00-11:20
| 11:00-11:20
| Developing Standards for Data Quality Tests and Assertions using a Fitness for Use Framework
| Developing Standards for Data Quality Tests and Assertions using a Fitness for Use Framework<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/9MorrisP.pptx Slides]
| Paul J. Morris, Museum of Comparative Zoology, Harvard University
| Paul J. Morris, Museum of Comparative Zoology, Harvard University
|-
|-
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|  
|  
| Poster
| Poster
| Better quality, less work: How to improve collections data with the efficient use of resources provided by aggregators and consortia
| [https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/Krimmel_SPNHC2017_poster_small_AdvancesInDigitization.pdf Better quality, less work: How to improve collections data with the efficient use of resources provided by aggregators and consortia] (pdf)
| Erica Krimmel, The Chicago Academy of Sciences / Peggy Notebaert Nature Museum
| Erica Krimmel, The Chicago Academy of Sciences / Peggy Notebaert Nature Museum
|-
|-
|  
|  
| Poster
| Poster
| Digitizing Paleogene Mammals from the Rocky Mountain Region
| [https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/advancesInDigitization/Seyler_SPNHC2017_postersmaller_AdvancesInDigitization.pdf Digitizing Paleogene Mammals from the Rocky Mountain Region] (pdf)
| Holly Seyler, University of Colorado Museum of Natural History Boulder
| Holly Seyler, University of Colorado Museum of Natural History Boulder
|-
|-
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|-
|-
|  
|  
| Poster
| On the front lines of discovering change: Biodiversity specimen collectors as the Anthropocene’s outlier detectors
| Katelin D. Pearson, Florida State University, iDigBio
|-
|  
|  
|  
|  
|
|  
|  
|-
|-
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| INNOVATIVE USES OF COLLECTION DATA
! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| INNOVATIVE USES OF COLLECTION DATA [http://idigbio.adobeconnect.com/p0o4p1ignssy/ Symposium Recording]
|-
|-
| 10
| 10
| 11:20-11:40 am
| 11:20-11:40 am
| Innovative Inventory: Shedding light on dark data and creating new collection tools
| Innovative Inventory: Shedding light on dark data and creating new collection tools<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/10EstesSmargiassiK.pptx Slides]
| Kathryn Estes-Smargiassi, Natural History Museum of Los Angeles County
| Kathryn Estes-Smargiassi, Natural History Museum of Los Angeles County
|-
|-
| 11
| 11
| 11:40-noon
| 11:40-noon
| Starting from scratch: Digitization of an entire collection ecosystem
| Starting from scratch: Digitization of an entire collection <br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/11Motz%20G.pptx Slides] (recording start time 3:18:08)
| Gary Motz, Center for Biological Research Collections, Indiana University
| Gary Motz, Center for Biological Research Collections, Indiana University
|-
|-
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| 12
| 12
| 1:30-1:50 pm
| 1:30-1:50 pm
| Analyzing the University of Colorado Herbarium (COLO) digital collection.
| Analyzing the University of Colorado Herbarium (COLO) digital collection.<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/12Allen_J_R.ppt Slides]
| J Ryan Allen, University of Colorado Herbarium
| J Ryan Allen, University of Colorado Herbarium
|-
|-
| 13
| 13
| 1:50-2:10 pm
| 1:50-2:10 pm
| A digitized collection: Where next?
| A digitized collection: Where next?<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/13MolineuxA.pptx Slides]
| Ann Molineux, University of Texas at Austin
| Ann Molineux, University of Texas at Austin
|-
|-
| 14
| 14
| 2:10-2:30 pm
| 2:10-2:30 pm
| From the scrub to the web: Digitizing the collection at the Archbold Biological Station
| From the scrub to the web: Digitizing the collection at the Archbold Biological Station<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/14LeonS.pptx Slides]
| Stephanie Leon, Archbold Biological Station
| Stephanie Leon, Archbold Biological Station
|-
|-
|
| 15
| 2:30-2:50 pm
| 2:30-2:50 pm
| Deep Learning with Botanical Specimen Images<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/15orlis.pptx Slides] [[Media:15orlis.pdf|pdf version]]
| Sylvia Orli, Smithsonian Institution
|-
|
| 2:50-3:10 pm
| BREAK
| BREAK
|  
|  
|-
| 15
| 2:50-3:10 pm
| Deep Learning with Botanical Specimen Images
| Sylvia Orli, Smithsonian Institution
|-
|-
| 16
| 16
| 3:10-3:30 pm
| 3:10-3:30 pm
| Fantastic Fishes and Where to Find Them: A Dynamic Inventory of United States Fish Collections
| Fantastic Fishes and Where to Find Them: A Dynamic Inventory of United States Fish Collections<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/16Singer_R.pptx Slides]
| Randy Singer, Florida Museum of Natural History/iDigBio
| Randy Singer, Florida Museum of Natural History/iDigBio
|-
|-
| 17
| 17
| 3:30-3:50 pm
| 3:30-3:50 pm
| Georeferencing for Research Use (GRU): Innovative geospatial training using natural history collections
| Georeferencing for Research Use (GRU): Innovative geospatial training using natural history collections<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/innovativeUsesOfCollectionsData/17JamesFourSquare330.pptx Slides]
| Shelley James, Florida Museum of Natural History
| Shelley James, Florida Museum of Natural History
|-
|-
Line 163: Line 167:
| Adam Cohen, Biodiversity Collections (Texas Natural History Collections), University of Texas at Austin
| Adam Cohen, Biodiversity Collections (Texas Natural History Collections), University of Texas at Austin
|}
|}
==Symposia Recordings==
*[http://idigbio.adobeconnect.com/p46c0e27j3uv/ Advances in Digitization]
*[http://idigbio.adobeconnect.com/p0o4p1ignssy/ Innovative Uses of Collections Data]

Latest revision as of 13:15, 29 March 2018

General Information

When: all day Wednesday, June 22, 2017
Where: 2017 SPNHC Annual Meeting in Denver, Colorado
Sponsored by: iDigBio and SPNHC
Organizers Shelley James and Deborah Paul

Remote Access: http://idigbio.adobeconnect.com/spnhc2017_foursquare

Summary: iDigBio brings two symposia to SPNHC 2017. The first, Advances in Digitization, offers talks showcasing current trends and recent developments in the world of collections digitization. We'll hear about new strategies for scaling up and improved data quality, and get input from the herbaria, fish, and paleo collections. We'll delve into the realm of 3-D imaging, citizen science, and research librarians as collaborators. Four posters offered in this section cover digitization efficiency and crowdsourcing ideas from insect collections, to paleo. We welcome our international participants from KEW, the Museum für Naturkunde, and the MNHN.

In our second symposium, we turn to the topic of Innovative Uses of Collections Data. Many collections now have more complete species inventories, and many have more complete digitized specimen-level collections. What can be done with this data in house,to help the collections themselves? How does the aggregation of this data help collections more effectively advocate for themselves? How can it be used to for strategic planning? for advertisement? for seeking funding and setting policies? What can researchers and collections managers tell us about their georeferencing needs? From the biological field station to collections with specimens in the millions, find out what collections are learning about their own holdings - and the potential in that information.

Order Time Title Presenter, Affiliation
ADVANCES IN DIGITIZATION Symposium Recording
1 8:00-8:20 Herbarium Link - a novel system for the digitization workflow of herbarium specimens Jennifer Ackerfield, Colorado State University
2 8:20-8:40 Everyday Operational Issues Associated with Managing the Digital Collections of one of the Largest Herbaria in the World
Slides 		Sarah Phillips, Royal Botanic Gardens Kew
3 8:40-9:00 lnteroperability between GEOLocate and Symbiota software: Collaborative georeferencing within a large scale digitization project.
Slides 		Michael Denslow, Southeast Regional Network of Expertise and Collections (SERNEC)
4 9:00-9:20 Wiki-handbook of best practice and standards for 3D imaging of natural history specimens
Slides 		Jonathan Brecko, SYNTHESYS3 and Royal Belgian Institute of Natural Sciences
5 9:20-9:40 Automating 3D collection capture: Developing systems for 3D digitization at scale
Slides 		Jonathan Blundell, Smithsonian Institution
9:40-10:00 BREAK
6 10:00-10:20 Novel Use of Inselect in Digitization of Paleontology Collections
Slides 		Christina Lutz, Yale Peabody Museum
7 10:20-10:40 e-ReColNat: A multiparty approach
Slides 		Julien Husson (MNHN, e-ReColNat), Fanny Chabas (GRAHAL), Ellen van Noort (Picturae), Marc Pignal (MNHN, e-ReColNat (ANR-11-INSB-0004))
8 10:40-11:00 Responding to the Invisible Infrastructure: Research Libraries as Preservation Partners in the Curation of Physical Specimen Biocollections Data
Slides (recording start time 2:19:25) 		Gary Motz & Jennifer Laherty, Indiana University
9 11:00-11:20 Developing Standards for Data Quality Tests and Assertions using a Fitness for Use Framework
Slides 		Paul J. Morris, Museum of Comparative Zoology, Harvard University
Poster Crowdsourcing Carabid Collections Bryan Brunet, University of Alberta Museums
Poster Better quality, less work: How to improve collections data with the efficient use of resources provided by aggregators and consortia (pdf) Erica Krimmel, The Chicago Academy of Sciences / Peggy Notebaert Nature Museum
Poster Digitizing Paleogene Mammals from the Rocky Mountain Region (pdf) Holly Seyler, University of Colorado Museum of Natural History Boulder
Poster Increasing data robustness for concretions using Inselect Jessica Utrup, Yale Peabody Museum of Natural History
Poster On the front lines of discovering change: Biodiversity specimen collectors as the Anthropocene’s outlier detectors Katelin D. Pearson, Florida State University, iDigBio
INNOVATIVE USES OF COLLECTION DATA Symposium Recording
10 11:20-11:40 am Innovative Inventory: Shedding light on dark data and creating new collection tools
Slides 		Kathryn Estes-Smargiassi, Natural History Museum of Los Angeles County
11 11:40-noon Starting from scratch: Digitization of an entire collection
Slides (recording start time 3:18:08) 		Gary Motz, Center for Biological Research Collections, Indiana University
noon-1:30 pm LUNCH
12 1:30-1:50 pm Analyzing the University of Colorado Herbarium (COLO) digital collection.
Slides 		J Ryan Allen, University of Colorado Herbarium
13 1:50-2:10 pm A digitized collection: Where next?
Slides 		Ann Molineux, University of Texas at Austin
14 2:10-2:30 pm From the scrub to the web: Digitizing the collection at the Archbold Biological Station
Slides 		Stephanie Leon, Archbold Biological Station
15 2:30-2:50 pm Deep Learning with Botanical Specimen Images
Slides pdf version 		Sylvia Orli, Smithsonian Institution
2:50-3:10 pm BREAK
16 3:10-3:30 pm Fantastic Fishes and Where to Find Them: A Dynamic Inventory of United States Fish Collections
Slides 		Randy Singer, Florida Museum of Natural History/iDigBio
17 3:30-3:50 pm Georeferencing for Research Use (GRU): Innovative geospatial training using natural history collections
Slides 		Shelley James, Florida Museum of Natural History
Poster Update on the Fishes of Texas Project Adam Cohen, Biodiversity Collections (Texas Natural History Collections), University of Texas at Austin

Symposia Recordings

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