Paleo Imaging Workshop: Difference between revisions
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This wiki supports the paleo imaging workshop to be held at the University of Texas at Austin Jackson School of Geosciences, to include the High-Resolution X-ray CT Facility, and various research units at the Pickle Research Center, 28 April-2 May, 2014 | This wiki supports the paleo imaging workshop to be held at the University of Texas at Austin Jackson School of Geosciences, to include the High-Resolution X-ray CT Facility, and various research units at the Pickle Research Center, 28 April-2 May, 2014 | ||
{| class="wikitable" style="float:right;" | |||
! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Paleo Imaging WorkshopWorkshop | |||
|- | |||
| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE-->[[File:Paleo_Imaging_Workshop_logo.PNG|center|300px| ]]<br /> | |||
|- | |||
!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Specify for Paleo Imaging Workshop | |||
|- | |||
|[https://www.idigbio.org/wiki/images/a/a1/First_Day_Agenda_Draft.pdf Paleo Imaging Workshop Agenda] | |||
|- | |||
|[https://www.idigbio.org/biblio?f%5bkeyword%5d=363 Paleo Imaging Workshop Biblio Entries] | |||
|- | |||
| [https://www.idigbio.org/content/university-texas-proves-excellent-venue-paleo-imaging-workshop Paleo Imaging Workshop Report] | |||
|} | |||
==[[Digitization Training Workshops|Digitization Training Workshops Wiki Home]]== | ==[[Digitization Training Workshops|Digitization Training Workshops Wiki Home]]== | ||
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*Final wrap up at Aloft Hotel, 1 May, 6:00-6:30 p.m. | *Final wrap up at Aloft Hotel, 1 May, 6:00-6:30 p.m. | ||
*Reception/mixer: 6:30-9:30 p.m., 29 April, Jackson School for Geosciences | *Reception/mixer: 6:30-9:30 p.m., 29 April, Jackson School for Geosciences | ||
==[https://www.idigbio.org/content/university-texas-proves-excellent-venue-paleo-imaging-workshop Workshop Report]== | |||
[https://www.idigbio.org/content/university-texas-proves-excellent-venue-paleo-imaging-workshop Paleo Imaging Workshop Report] | |||
==Logistics== | ==Logistics== | ||
| Line 27: | Line 45: | ||
==Presentation Documents== | ==Presentation Documents== | ||
*[[Media:Nelson_Intro2iDigBio_PalImaging.pdf|Introduction to iDigBio & Logistics (Gil Nelson)]] | *[[Media:Nelson_Intro2iDigBio_PalImaging.pdf|Introduction to iDigBio & Logistics (Gil Nelson)]] | ||
*[[Media:Rowe-iDigBio_2014.pdf|X-RAY COMPUTED TOMOGRAPHY in RESEARCH COLLECTIONS (Tim Rowe)]] | |||
*[[Media:DROID iDigBio Austin.pdf|DROID (Una Farrel & Talia Karim)]] | |||
*[[Media:Strait Austin 2014 final.pdf|3D Laser Scanning: Accuracy and Precision (Suzanne Strait)]] | |||
*[[Media:Wood-3D scanner v1.pdf|FAQ: 3D surface scanning of paleo collections with a NextEngine laser scanner (Aaron Wood)]] | |||
*[[Media:idigbio Austin 2014_04_29 FINAL.pdf|3D Scanning…and more. (John Kappelman)]] | |||
*[[Media:Roger i2D images DigBio 2014.pdf|2D Imaging for Paleontology Collection Objects (Roger Burkhalter)]] | |||
*[[Media:Byrd-PaleoimagingWorkshop.pdf|Digitizing 2D fossils: Selecting the Equipment (Christina Byrd)]] | *[[Media:Byrd-PaleoimagingWorkshop.pdf|Digitizing 2D fossils: Selecting the Equipment (Christina Byrd)]] | ||
*[[Media:PMayer-Polarizedlight.pdf|The Advantages in Using Textural and Polarized Lighting for Imaging Fossils (Paul Mayer)]] | |||
*[[Media:D Miller iDigBio 2014.pdf|3D Imaging of Fossils Using Close-Range Photogrammetry (Dan Miller)]] | *[[Media:D Miller iDigBio 2014.pdf|3D Imaging of Fossils Using Close-Range Photogrammetry (Dan Miller)]] | ||
*[[Media: | *[[Media:Price-ForTexas.pdf|Close Range Photogrammetric Analyses of an Active Paleontological Excavation (Maribeth Price)]] | ||
*[[Media:Graham_0429.pdf|Reflectance Transformation Imaging (Chelsea Graham)]] | |||
*[[Media:Pyenson_iDigBio_UTAustin_3.pdf|Cetaceans in silico: 3D digitizing a fossil whale graveyard in the Atacama of Chile (Nicolas Pyenson)]] | |||
*[[Media:urban_3DSCHC.pdf|3D Printing for Scientific & Cultural Heritage Collections (Richard Urban)]] | |||
*[[Media:Hasiuk-2014_0429_iDigBio.pdf|3D Printing in Teaching and Outreach (Franek Hasiuk)]] | |||
*[[Media:Ehret_3DPresentation.pdf|3-D Printing Fossils at the University of Alabama (Dana Ehret)]] | *[[Media:Ehret_3DPresentation.pdf|3-D Printing Fossils at the University of Alabama (Dana Ehret)]] | ||
*[[Media:MacFadden-2014 3D Workshop Austin TX.pdf|Education & Outreach (E&O) using 3D printing: Immense possibilities (Bruce MacFadden)]] | |||
*[[Media:Vance-GeoScienceWorld_OpenGeoSci Presentation.pdf|OPENGEOSCI & PUBLIC GEOSCIENCE DATA DISCOVERY (Alix Vance)]] | |||
*[[Media:MacFadden-2014 3D Workshop Austin TX.pdf| | *[[Media:Molineux-iDigBio-PaleoImaging-2014.pdf|Attaching images to database records (Ann Molineux)]] | ||
*[[Media:ShortcourseManual.pdf|UTCT Short Course Manual]] | |||
*[[Media:Vance-GeoScienceWorld_OpenGeoSci Presentation.pdf|Vance | |||
*[[Media: | |||
*[[Media: | |||
==Workshop Recordings== | ==Workshop Recordings== | ||
| Line 64: | Line 83: | ||
====Day3 May 1==== | ====Day3 May 1==== | ||
*[http://idigbio.adobeconnect.com/p7gdsrld0p1/ Core digitization/imaging (James Donnelly) and SEM micro imaging (Rob Reed)] | |||
**[[Media:SEM_foram_TX.pdf|Foram SEM image from workshop demonstration (Danita Brandt)]] | |||
*[http://idigbio.adobeconnect.com/p9o50cdellz/ TACC Data management for images (Chris Jordan) and UAV 3D model using UAV (Josh Lambert)] | |||
**[[Media:IDigBio-DataManagement.pdf|Data Management for Digitized Collections, PDF version (Chris Jordan, TACC)]] | |||
*[http://idigbio.adobeconnect.com/p93kvijfsbj/ Stations 1-11] | |||
;Station Key: | |||
:Station 5: IllustratorLineDrawings Kyle Luckenbill Start - 21:45 | |||
:Station 6: SpecPrepSmokeRemove Jim Sprinkle 22:00 - 42:50 | |||
:Station 7: MultiFocusHeliconRemote Angie Thompson 43:30 - 1:02:35 | |||
:Station 3: Lightbox (Photosimile) Erica Clites 1:05:19 - 1:24:53 | |||
:*[[Media:Clites_iDigBio_Demo_sheet.pdf|Cheat Sheet for Specimen Imaging Using a Light Box]] | |||
:Station 1: NextEngine/3Dimaging Aaron Wood 1:26:57 - 1:47:00 | |||
:Station 11: Visionary Digital BK system Ben Dumont 2:02:57 - 2:28:40 | |||
:Station 9: WholeDrawerImaging Cissy Geigerman 2:29:05 - 2:37:06 | |||
:Station 10: ImageAttachmentDatabase Liath Appleton 2:37:50 - 2:44:44 | |||
:Station 2: GeneralImaging Roger Burkhalter 2:46:45 - 3:00:11 | |||
:Station 4: SmallSpecimenImaging Christina Byrd 3:01:02 - End | |||
==Resources and Links== | ==Resources and Links== | ||
*Cheat sheet for lightbox demonstration by Erica Clites | *Cheat sheet for lightbox demonstration by Erica Clites | ||
**[[Media: | **[[Media:EClites_iDigBio_Demo_sheet_scripts.pdf|Cheat Sheet for Specimen Imaging Using a Light Box and Photoshop Scripts]] | ||
*Suggested links from Roger Burkhalter, Sam Noble Museum | *Suggested links from Roger Burkhalter, Sam Noble Museum | ||
**[http://www.macrolenses.de/start.php?lang A place to see various macro lenses] | **[http://www.macrolenses.de/start.php?lang A place to see various macro lenses] | ||
Latest revision as of 13:02, 3 February 2015
This wiki supports the paleo imaging workshop to be held at the University of Texas at Austin Jackson School of Geosciences, to include the High-Resolution X-ray CT Facility, and various research units at the Pickle Research Center, 28 April-2 May, 2014
| Paleo Imaging WorkshopWorkshop | |
|---|---|
 | |
| Quick Links for Specify for Paleo Imaging Workshop | |
| Paleo Imaging Workshop Agenda | |
| Paleo Imaging Workshop Biblio Entries | |
| Paleo Imaging Workshop Report | |
Digitization Training Workshops Wiki Home
Workshop Evaluation
Agenda
There are 3 agendas. Day 1 is a large group session. Days 2 & 3 are mirrors of each other and feature a short course on CT scanning and a series of demonstrations.
- Agenda, Day 1
- Agenda, Days 2 & 3: CT Scanning short course agenda (repeated)
- Agenda, Days 2 & 3: Demonstration stations (repeated)
- Final wrap up at Aloft Hotel, 1 May, 6:00-6:30 p.m.
- Reception/mixer: 6:30-9:30 p.m., 29 April, Jackson School for Geosciences
Workshop Report
Logistics
Remote Participation
Remote participation will be provided via Adobe Connect: http://idigbio.adobeconnect.com/paleo/
Editable copy of the DROID4 workflows for input and editing. Please use a color other than black to make edits and changes. Changes are saved immediately. http://tinyurl.com/droid4copy
Presentation Documents
- Introduction to iDigBio & Logistics (Gil Nelson)
- X-RAY COMPUTED TOMOGRAPHY in RESEARCH COLLECTIONS (Tim Rowe)
- DROID (Una Farrel & Talia Karim)
- 3D Laser Scanning: Accuracy and Precision (Suzanne Strait)
- FAQ: 3D surface scanning of paleo collections with a NextEngine laser scanner (Aaron Wood)
- 3D Scanning…and more. (John Kappelman)
- 2D Imaging for Paleontology Collection Objects (Roger Burkhalter)
- Digitizing 2D fossils: Selecting the Equipment (Christina Byrd)
- The Advantages in Using Textural and Polarized Lighting for Imaging Fossils (Paul Mayer)
- 3D Imaging of Fossils Using Close-Range Photogrammetry (Dan Miller)
- Close Range Photogrammetric Analyses of an Active Paleontological Excavation (Maribeth Price)
- Reflectance Transformation Imaging (Chelsea Graham)
- Cetaceans in silico: 3D digitizing a fossil whale graveyard in the Atacama of Chile (Nicolas Pyenson)
- 3D Printing for Scientific & Cultural Heritage Collections (Richard Urban)
- 3D Printing in Teaching and Outreach (Franek Hasiuk)
- 3-D Printing Fossils at the University of Alabama (Dana Ehret)
- Education & Outreach (E&O) using 3D printing: Immense possibilities (Bruce MacFadden)
- OPENGEOSCI & PUBLIC GEOSCIENCE DATA DISCOVERY (Alix Vance)
- Attaching images to database records (Ann Molineux)
- UTCT Short Course Manual
Workshop Recordings
Day1 April 29
Day2 April 30
- Intro to CT for Biological/Paleontological Applications
- CT Lab tour
- Data Processing in ImageJ/Beginning Visualization with Avizo
- Continuing Visualization with Avizo
- Introduction of Short Course Data Sets
- Continuing Visualization with Avizo/Hands-on Time with Short Course Data Sets
Day3 May 1
- Core digitization/imaging (James Donnelly) and SEM micro imaging (Rob Reed)
- TACC Data management for images (Chris Jordan) and UAV 3D model using UAV (Josh Lambert)
- Stations 1-11
- Station Key
- Station 5: IllustratorLineDrawings Kyle Luckenbill Start - 21:45
- Station 6: SpecPrepSmokeRemove Jim Sprinkle 22:00 - 42:50
- Station 7: MultiFocusHeliconRemote Angie Thompson 43:30 - 1:02:35
- Station 3: Lightbox (Photosimile) Erica Clites 1:05:19 - 1:24:53
- Station 1: NextEngine/3Dimaging Aaron Wood 1:26:57 - 1:47:00
- Station 11: Visionary Digital BK system Ben Dumont 2:02:57 - 2:28:40
- Station 9: WholeDrawerImaging Cissy Geigerman 2:29:05 - 2:37:06
- Station 10: ImageAttachmentDatabase Liath Appleton 2:37:50 - 2:44:44
- Station 2: GeneralImaging Roger Burkhalter 2:46:45 - 3:00:11
- Station 4: SmallSpecimenImaging Christina Byrd 3:01:02 - End
Resources and Links
- Cheat sheet for lightbox demonstration by Erica Clites
- Suggested links from Roger Burkhalter, Sam Noble Museum
- Reflectance Transformation Imaging (RTI) resources and information from Chelsea Graham, Yale Digital Commons
- Cultural Heritage Imaging (CHI), company that fabricates the RTI dome
- Training, consulting and support from CHI
- RTI acquisition techniques. RTI acquisition is possible under domes with fixed lights as well as through a string and light method where the light location is measured and moved for each image.
- Downloads of RTIBuilder–-a software to create the visualization files (.rti and .ptm) from image sets and RTIViewer–-a software for visualization
- Another viewer available for .ptm file visualization from HP
- Read about polynomial texture maps (PTM) from HP
- Dissemination via web visualization
- Geological Society of America Annual Meeting, 2014- Paleo & Geo Sample Digitization Session