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This wiki supports the work of the small herbarium interest group, a group founded at the 2013 conference of the Association of Southeastern Biologists, Charleston, WV.
This wiki supports the work of the NANSH (North American Network of Small Herbaria) Working Group, a group founded at the 2013 conference of the Association of Southeastern Biologists, Charleston, WV.
 
==[[Digitization Training Workshops|Digitization Training Workshops Wiki Home]]==
 
==Contact Information==
*For further information about this working group or the Small Collections Network, contact:
**Gil Nelson (gnelson@bio.fsu.edu) or
**Anna Monfils (monfi1ak@cmich.edu)
*To join the Small Collections Network listserv, visit: [http://scnet.acis.ufl.edu/tags/listserv SCNet.acis.ufl.edu]
 
==Interest Group Working Documents==
* [[Media:SmallHerbariumProposal.pdf|Proposal to establish interest group]]
*[http://tinyurl.com/smallherbrcndoc Discussion notes on potential small herbarium RCN]
*[https://docs.google.com/document/d/1eZgDDlFpdT-erst2xLeg4dZzsuIsfRghcecnhl5Pfhg/edit?usp=sharing Issues in Recruiting, Retaining, and Sustaining Digitization in Small Herbaria]
 
==Upcoming Webinars and Meetings==
*All meetings/webinars are held at https://idigbio.adobeconnect.com/smallherb
*7 July 2014, 3:00 p.m. EDT Georeferencing herbarium specimens using Geolocate, Part I, with Nelson Rios
**[http://idigbio.adobeconnect.com/p1wtfeto4kg/ Webinar Recording]
*21 July 2014, 3:00 p.m. EDT Georeferencing herbarium specimens using Geolocate, Part II, with Nelson Rios
**[http://idigbio.adobeconnect.com/p5jm7vlf5xr/ Webinar Recording]
 
==Potential and Recommended Meeting Topics==
*Using Geolocate for georeferencing herbarium collections (Nelson Rios): this could be a series of several webinars all focused on herbarium georeferencing.
*Digital Photography 101: Morphology of a digital camera (Gil Nelson): this could also be series with more than one speaker.
*Digital image file types and standards, what file formats mean and recommended practices: JPG, TIFF, NEF, CR2, DNG
*Demonstration of Semi-automatic Label Information Extraction System (SALIX) (Daryl Lafferty): see for reference, http://nhc.asu.edu/vpherbarium/canotia/SALIX3.pdf
*Uploading data through the Specify Workbench (Andy Bentley): this could also be a 3 or 4-part series
*The future of NSF funding for small herbaria (NSF staff): where small herbaria fit into the picture
*Digitization 101: Basics I need to know to start, initial steps for getting started (suggested from Small Herbarium Workshop at FSU)
*What are Darwin Core and IPT?
*OCR, Machine Learning, Natural Language Processing
*What does digitization do for me?
*Sustaining Digitization: After the initial digitization
*Sharing Resources: Creating a Consortium of Small Collections
 
==Meetings==
*14 Feb 2014, 2-3 p.m. Stinger Guala, BISON, GBIF, ITIS
 
==Discussion Notes==
*[https://docs.google.com/document/d/1nwB_0G8wu4d0Lxr0kV37TJWagzrj-GUHB9DlgxrdrrA/edit?usp=sharing Chat 2013-09-06]
*[[Media:Notes_from_021414.pdf|Notes from meeting 14 Feb 2014]]
 
==Species/Herbaria lists by states==
*[[Media:Methods.pdf|Methods]]
**[[Media:SpeciesDistributionModelingusingGBIFdata-HeatherDame.pdf|Modeling Species Distribution and Species Richness for Fuireneae (sedges) in North America (Heather Dame)]]
*[http://idigbio.org//sites/default/files/working-groups/NANSH/Species_List_Information.xlsx Composite Species Lists]
*Arkansas
**[[Media:Marsico_Arkansas_S1_and_S2_List_19MAR2014.pdf|Arkansas S1 ands S2]]
**[[Media:My_methodology.pdf|Travis Marsico's methodology]]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Arkansas_Tracked_Vascular_Plant_Species_S1_and_S2.xlsx Arkansas tracked vascular plants]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Arkansas_G1-G3.xlsx Arkansas species list (G1-G3)]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/ArkansasListNotes.pdf Arkansas List Notes]
*California
**[http://idigbio.org/sites/default/files/working-groups/NANSH/California_RareCommonInvasive.xlsx California composite species lists (rare, common, invasive)]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/California_Herbaria.xlsx California herbaria]
**[[Media:NANSH_paper_Test_CA_species_Krimmel.pdf|Test species map for CA]]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/NANSH_CA_S1.xlsx S1]
*Colorado
**[[Media:Colorado_Invasive_Species.pdf|Colorado invasive species]]
**[[Media:Colorado_comon_species_with_methods.pdf|Colorado common species]]
**[[Media:10_Random_S1_and_S2_species_for_Colorado.pdf|Colorado S1 and S2]]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/CO_G1-G3_Plant%20List.xls Colorado species list]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Colorado%20Herbaria.doc Colorado herbaria]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/10%20Random%20S1%20and%20S2%20species%20for%20Colorado.doc S1]
*Florida
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaG1.xlsx Florida G1 Species]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaG2.xlsx Florida G2 Species]
**[[Media:FloridaG1.pdf|Florida top ten G1]]
**[[Media:FloridaG2.pdf|Florida top ten G2]]
**[[Media:S1_Florida.pdf|Florida top ten S1]]
**[[Media:S2_Florida.pdf|Florida top ten S2]]
**[[Media:FL_Cat_I.pdf|Florida top ten Cat I invasive]]
**[[Media:FL_Native_10.pdf|Ten Florida Natives]]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FloridaHerbaria.pdf Florida herbaria]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FL_S1.xlsx S1]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/FL_Cat_I.xlsx Cat I Invasive]
*Georgia
**[[Media:Georgia_SI_taxa.pdf|Georgia Rare Plants S1]]
**[[Media:Georgia S2 taxa.pdf|Georgia Rare Plants S2]]
**[[Media:Georgia_common_taxa.pdf|Georgia common]]
**[[Media:Georgia_invasive_plants.pdf|Georgia invasive]]
**[[Media:Georgia_Herbaria.pdf|Georgia Herbaria]]
*Michigan
**[[Media:Michigan_Randomly_Generated_Lists.pdf ‎|Michigan S1 and S2]]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Michigan_Herbarium_List.xlsx Michigan herbaria]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/MIchiganListedSpecies.xlsx Michigan Listed Species]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/Michigan_Native_Species.xlsx Michigan Native Species list]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/MichiganNotes.pdf Michigan Notes]
*Tennessee
**[http://idigbio.org/sites/default/files/working-groups/NANSH/TN_S1_RANDOM_0.xlsx Tennessee S1 and S2]
**[[Media:G1-G3_species_for_Tennessee.pdf|Tennessee G1-G3 species]]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/TennesseeHerbaria.pdf Tennessee Herbaria]
**[http://idigbio.org/sites/default/files/working-groups/NANSH/TN_S1_RANDOM.xlsx S1]
*West Virginia
**[http://idigbio.org/sites/default/files/working-groups/NANSH/WV-T%26E%20plants.pdf West Virginia T&E Species]
 
==Research Tasks==
*Criteria for species selection (G species, co-efficient of conservation, endemics, invasive, weedy, etc.)
*Strategies for selecting herbaria from each state
*Strategies for sampling data from not-yet-digitized herbaria
*Compiling/writing a literature review
*Compiling data from specimens cited in floras and publications (Travis)
*Determining the use of BISON data/tools
 
==North American Network of Small Herbaria==
*[http://symbiota.org/seinet/smcollections/portal/index.php Link to the North American Network of Small Herbaria Portal]
 
==Botany 2014 Small Herbarium Workshop==
*[https://docs.google.com/document/d/11NbXWsO2GFHBtFeaBKl4Ugi58NDZ1OErxdrRVL1l7Hc/edit Draft Agenda]
*Planning team
**Libby Ellwood (Florida State University/iDigBio)
**Ed Gilbert (Arizona State University)
**Emily Gillespie (Marshall)
**Kari Harris (Arkansas State University)
**Erica Krimmel (Sagehen Field Station)
**Travis Marsico (Arkansas State University)
**Anna Monfils (Central Michigan University)
**Ashley Morris (Middle Tennessee State University)
**Gil Nelson (Florida State University/iDigBio)
**Pam Soltis (University of Florida/iDigBio)
**Kim Watson (New York Botanical Garden)
 
==APG Documents and Web Sites==
* [https://docs.google.com/document/d/1eKBfjyiDTjYLSMbha7JW8Z2eYcuqvjCY9AmoOal8xtQ/edit?usp=sharing Notes (2013-10-11)]
* [[Media:APGIII_2009.pdf|Angiosperm Phylogeny Group 2009: latest paper (APGIII)]]
* [http://www.mobot.org/MOBOT/research/APWeb/ Stevens: Angiosperm Phylogeny website]
* [[Media:Chase_and_Reveal_2009.pdf|Chase and Reveal 2009: phylogenetic classification of land plants for APGIII]]
* [[Media:Smith_et_al_2006.pdf|Smith et al. 2006: recent treatment of ferns]]
* [[Media:Rothfels_%26_Sundue_et_al._2012_Taxon.pdf|Rothfels Sundue et al 2012: revised family level classification of Polypodiales]]
* [http://www.indexfungorum.org/ Index Fungorum web site ]
 
==Relevant Papers and Publications==
* [http://bioscience.oxfordjournals.org/content/55/9/771.abstract Successfully Curating Smaller Herbaria and Natural History Collections in Academic Settings (Neil Snow)]

Latest revision as of 14:05, 25 April 2015

This wiki supports the work of the NANSH (North American Network of Small Herbaria) Working Group, a group founded at the 2013 conference of the Association of Southeastern Biologists, Charleston, WV.

Digitization Training Workshops Wiki Home

Contact Information

  • For further information about this working group or the Small Collections Network, contact:
    • Gil Nelson (gnelson@bio.fsu.edu) or
    • Anna Monfils (monfi1ak@cmich.edu)
  • To join the Small Collections Network listserv, visit: SCNet.acis.ufl.edu

Interest Group Working Documents

Upcoming Webinars and Meetings

Potential and Recommended Meeting Topics

  • Using Geolocate for georeferencing herbarium collections (Nelson Rios): this could be a series of several webinars all focused on herbarium georeferencing.
  • Digital Photography 101: Morphology of a digital camera (Gil Nelson): this could also be series with more than one speaker.
  • Digital image file types and standards, what file formats mean and recommended practices: JPG, TIFF, NEF, CR2, DNG
  • Demonstration of Semi-automatic Label Information Extraction System (SALIX) (Daryl Lafferty): see for reference, http://nhc.asu.edu/vpherbarium/canotia/SALIX3.pdf
  • Uploading data through the Specify Workbench (Andy Bentley): this could also be a 3 or 4-part series
  • The future of NSF funding for small herbaria (NSF staff): where small herbaria fit into the picture
  • Digitization 101: Basics I need to know to start, initial steps for getting started (suggested from Small Herbarium Workshop at FSU)
  • What are Darwin Core and IPT?
  • OCR, Machine Learning, Natural Language Processing
  • What does digitization do for me?
  • Sustaining Digitization: After the initial digitization
  • Sharing Resources: Creating a Consortium of Small Collections

Meetings

  • 14 Feb 2014, 2-3 p.m. Stinger Guala, BISON, GBIF, ITIS

Discussion Notes

Species/Herbaria lists by states

Research Tasks

  • Criteria for species selection (G species, co-efficient of conservation, endemics, invasive, weedy, etc.)
  • Strategies for selecting herbaria from each state
  • Strategies for sampling data from not-yet-digitized herbaria
  • Compiling/writing a literature review
  • Compiling data from specimens cited in floras and publications (Travis)
  • Determining the use of BISON data/tools

North American Network of Small Herbaria

Botany 2014 Small Herbarium Workshop

  • Draft Agenda
  • Planning team
    • Libby Ellwood (Florida State University/iDigBio)
    • Ed Gilbert (Arizona State University)
    • Emily Gillespie (Marshall)
    • Kari Harris (Arkansas State University)
    • Erica Krimmel (Sagehen Field Station)
    • Travis Marsico (Arkansas State University)
    • Anna Monfils (Central Michigan University)
    • Ashley Morris (Middle Tennessee State University)
    • Gil Nelson (Florida State University/iDigBio)
    • Pam Soltis (University of Florida/iDigBio)
    • Kim Watson (New York Botanical Garden)

APG Documents and Web Sites

Relevant Papers and Publications

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