Internal:Scrum

Planning Meeting #1 11/29/11

Problems

Problems with Storage

• Full text search at scale - use Riak?
• File system - cost, scale, access via web -> use object store, swift
• Efficient text store - divide data into text and objects
• Too big/unresiliant for 1 location
• Federation & replication is hard - Swift sort of has repl, Riak does but $$
• "Backup" and "Archive"
• Mapping many:many between imgs + specimens

Problems /w Local Data Processing

• Iteration / MapReduce performance (Riak may support natively)

 * API programming ease
 * File system support

• Access control / Metering / Monitoring & Policy
• Appliance vs service vs vm
• Port existing tools to run on our system
• Download results vs update iDigBio
• Image processing

Problems with Data Exposure

• Large requests eg results for "US" - metering, rate limiting
• Formats - JSON, XML, CSV - and heiarchical data
• Programatic access efficiency / latency, for r in set do
• API bindings for used languages
• Usage tracking

Problems with Portal

• Visualization depends on - geolocation - base mapping layers
• Full text/faceted search performance
• Taxon matching needs high quality name resolution service
• Comparison to existing portals
• Web design quality
• Typical software feature requests and bugs from users - bugs -> internal redmine (poor auth integration)
• Feedback, usage tracking

Problems w/ Peers and Partners

• How much data do peers get -
• Sharding and reassembly between peers - force full copy of metadata, shard objects - best to have one place with all images but allow peers to mirror sets
• Replication protocols - OAI-PMI

 * multimaster updates
 * data provenance and residnancy tracking

• Peer training and technology skills to run our stack - or packaging for simplicity
• Usage tracking of remote data access
• Peer storage of object versions

Problems with Ingestion

(bad data)

• Field mapping - standardize on Darwin, Audobon, etc
• Taxa Name -> LSID?....
• Georeferencing, provided, data importation, quality check
• Outlier detection/correction
• Staging/preview area assist with above
• Whole data set verses updates -> frequency of updates, DWC archive, TAPIR
• Human-in-loop vs Bulk

(good data)

• Specimen / Occurrence / Image ID [Local] -> GUID/URI (assign LSID range to each provider) [Global]
• Provenance Tracking - Collection, TCN, Uploader, Residency
• Versioning - overwrite vs append
• Required field set - GBIF minimum, not images
• Accepted protocols - TAPIR, DWC Arc, OAI-PMH, native to app, CSV, XLS, SQL

Tasks

Dec 11

• M- Fix c11node22
• A- Swift -> use 5 (6) nodes on c11
• A- Riak -> install on 5 (6) nodes on c11

Dec 17

• M+K+J- Sample dataset -> Ask Kate
• A+M- Select iDigBioCore from DWC + extensions
• M- Push sample data in + convert to GeoJSON
• A- Experiment/design som Riak queries - check performance, pick indexes

Dec 24

• A+M- Pick facets for search
• A- Faceted web search, output list
• A- GeoJSON + Polymaps

Future Sprints

• Does it scale?
• Get more (good) data
• Get more (bad) data
• 3rd party API (low level)
• API scale & access
• Peering