4,707
edits
Georeferencing for Research Use: Difference between revisions
Jump to navigation
Jump to search
no edit summary
No edit summary |
|||
| (9 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
= Post Workshop Publication = | |||
Organizers and participants co-wrote a summation from this workshop of lessons learned and key observations and published these results as | |||
*Seltmann K, Lafia S, Paul D, James S, Bloom D, Rios N, Ellis S, Farrell U, Utrup J, Yost M, Davis E, Emery R, Motz G, Kimmig J, Shirey V, Sandall E, Park D, Tyrrell C, Thackurdeen R, Collins M, O'Leary V, Prestridge H, Evelyn C, Nyberg B (2018) Georeferencing for Research Use (GRU): An integrated geospatial training paradigm for biocollections researchers and data providers. Research Ideas and Outcomes 4: e32449. https://doi.org/10.3897/rio.4.e32449 | |||
== iDigBio - CCBER GWG Georeferencing for Research Use, a short course == | == iDigBio - CCBER GWG Georeferencing for Research Use, a short course == | ||
| Line 14: | Line 17: | ||
|[https://www.idigbio.org/content/georeferencing-and-visualizing-biodiversity-data-research Georeferencing for Research Use, short course report] | |[https://www.idigbio.org/content/georeferencing-and-visualizing-biodiversity-data-research Georeferencing for Research Use, short course report] | ||
|} | |} | ||
[[Category:Workshop]] | [[Category:Workshop]][[Category:Georeferencing]][[Category:Research]] | ||
[[File:Capture.PNG|200px|thumb|right|hotel and NCEAS map]] | [[File:Capture.PNG|200px|thumb|right|hotel and NCEAS map]] | ||
October 4 - 7, 2016 at (https://www.nceas.ucsb.edu/) NCEAS, Santa Barbara California | October 4 - 7, 2016 at (https://www.nceas.ucsb.edu/) NCEAS, Santa Barbara California | ||
| Line 31: | Line 34: | ||
=== Course Instructor List === | === Course Instructor List === | ||
(''in alphabetical order'') David Bloom, Matt Collins, Una Farrell, Shelley James, Sara Lafia, Deborah Paul, Marcy Revelez, Nelson Rios, Katja Seltmann, Jessica Utrup, Mike Yost | (''in alphabetical order'') David Bloom, Matt Collins, Una Farrell, Shelley James, Sara Lafia, Deborah Paul, Marcy Revelez, Nelson Rios, Katja Seltmann, Jessica Utrup, Mike Yost | ||
=== Bring your Datasets and Laptops: === | === Bring your Datasets and Laptops: === | ||
'''Participants are strongly encouraged to bring representative datasets''' from their collections or research that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to work together to address any challenges. | '''Participants are strongly encouraged to bring representative datasets''' from their collections or research that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to work together to address any challenges. | ||
| Line 56: | Line 58: | ||
== Goals of the Workshop: == | == Goals of the Workshop: == | ||
*Best practices for researchers for in-the-field creating of new locality data. | *Best practices for researchers for in-the-field creating of new locality data and legacy data georeferencing. | ||
**Tools (hardware and software) and standards (what to document, datum etc.). | **Tools (hardware and software) and standards (what to document, datum etc.). | ||
**How to re-patriate data and/or best practices for putting data into data repository if can’t be repatriated (what the obstacles are and minimization of data loss). | **How to re-patriate data and/or best practices for putting data into data repository if can’t be repatriated (what the obstacles are and minimization of data loss). | ||
| Line 64: | Line 66: | ||
**Online tools | **Online tools | ||
**R | **R | ||
**QGIS | **QGIS | ||
*Researchers give input on the challenges for georeferencing, using existing georeferences. | *Researchers give input on the challenges for georeferencing, using existing georeferences. | ||
*Workflow review for some research review of using georeferenced data (Katja, Shelley, ...) | *Workflow review for some research review of using georeferenced data (Katja, Shelley, ...) | ||
Ultimate goal: Participant can point to aspects they have learned (tool, standard etc.) during the workshop and can indicate how they will use those aspects for their research goal/purpose (present or future) | Ultimate goal: Participant can point to aspects they have learned (tool, standard etc.) during the workshop and can indicate how they will use those aspects for their research goal/purpose (present or future). | ||
== Workshop Objectives: == | == Workshop Objectives: == | ||
| Line 333: | Line 335: | ||
|- | |- | ||
| 13:00<br> | | 13:00<br> | ||
| Cleaning Datasets: Spreadsheets, Open Refine, tracking your work (2)<br> | | [https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/GRU_spreadsheetsRefine6Oct2016.pptx Cleaning Datasets: Spreadsheets, Open Refine, tracking your work] (2)<br> | ||
| Deb Paul, Nelson Rios, Katja Seltmann<br> | | Deb Paul, Nelson Rios, Katja Seltmann<br> | ||
|- | |- | ||
| Line 455: | Line 457: | ||
<br/> | <br/> | ||
Some software [http://www.datacarpentry.org/workshop-template/install.html install instructions] from Data and Software Carpentry | Some software [http://www.datacarpentry.org/workshop-template/install.html install instructions] from Data and Software Carpentry | ||
== Requests for the Future == | |||
* Scripts/tools for repeated cleaning/analysis | |||
* Using the iDigBio API (API for dummies) | |||
* Inselect (note we provided links for more on this tool - to the workshop participants, see [https://docs.google.com/document/d/1m9cdERGtJkukb3EHUXPmCg58G08WWMA2HyBv28k6PUo/edit?usp=sharing google doc]) | |||
* Automated data cleaning - iDigBio and VertNet activities | |||
* What to do with quantified uncertainties & polygons - Jorge Soberon (KU team, others in the fitness for use GBIF working group - see [https://www.gbif.org/document/82612/report-of-the-task-group-on-gbif-data-fitness-for-use-in-distribution-modelling Final Report of the Task Group on GBIF Data Fitness for Use in Distribution Modelling] | |||
* QGIS layers - use cases (e.g. elevation) | |||
* Detailed Workflows - for georeferencing, when not to georeference (see iDigBio Georeferencing Working Group - https://www.idigbio.org/wiki/index.php/IDigBio_Working_Groups#Georeferencing_Working_Group_.28GWG.29), cleaning | |||
* Documentation for tutorials | |||
* Standards/possibility for storing multiple georeferences (and other possibilities such as annotations within iDigBio) | |||
* QGIS tutorial as a Software/Data Carpentry format | |||
* QGIS working group | |||
* Geolocate with r webinar (follow on from Symbiota webinar https://www.idigbio.org/content/symbiota-webinar-geolocate-toolkit https://www.idigbio.org/content/coge-collaborative-georeferencing-demo-webinar | |||
== Trained Georeferencers == | == Trained Georeferencers == | ||