Georeferencing for Research Use

Georeferencing for Research Use, a short course
Quick Links for GWG Second Train the Trainers Workshop
Georeferencing for Research Use - link to agenda
Biblio entries
Georeferencing for Research Use, short course report

Wiki URLs

1. Agenda (this page)
2. Logistics
3. Useful links
4. Photos

iDigBio - CCBER GWG Georeferencing for Research Use, a short course

October 4 - 7, 2016 at(https://www.nceas.ucsb.edu/) NCEAS, Santa Barbara California

We welcome you to this short course, with a focus on research use of georeferenced natural history collections data. We will include activities and discussions about best practices and tools for georeferencing, capturing locality data in the field, and using georeferenced specimen locality data in research. Attendees must have a basic level of experience with georeferencing techniques and tools and be researchers or directly involved with researchers.

After the workshop, we will encourage our participants to share use cases, any training materials developed, and to offer workshops, webinars, talks, or other events aimed at increasing use of best practices for georeferencing legacy locality data, best practices for capturing the locality data from future biological and paleontological collecting and sampling events, and best practices for using the data in research.

Some anticipated course content includes discussion and activities about georeferencing integration, georeferenced data visualization, and georeferences for modeling and research. Detailed agenda in development.

Logistics:

• link to logistics page or pdf

Meet the Participants:

• Participant list
• Map of Participants and Instructors for TTT1 and TTT2
• Wiki for all TTT1 and TTT2 Participants

Reading Materials and Resources:

1. Georeferencing Quick Reference Guide
   version 2012-10-08. John Wieczorek, David Bloom, Heather Constable, Janet Fang, Michelle Koo, Carol Spencer, Kristina Yamamoto
2. Guide to Best Practices for Georeferencing - Chapman, A.D. and J. Wieczorek (eds). 2006
   
3. Georeferencing Working Group Training Videos
   
4. Georeferencing Incidents from Locality Descriptions and its Applications: a Case Study from Yosemite National Park Search and Rescue Transactions in GIS, 2011, 15(6): 775–793 Authors: Doherty, Guo, Liu, Wieczorek, Doke
5. iDigBio Georeferencing Wiki http://tinyurl.com/idbgeowiki
6. HerpNET Georeferencing Resources
7. Pre Workshop Survey Questions and Summary Results
8. Take Workshop Notes Together Here
9. Post - Workshop Survey Questions
10. Got a Georeferencing Question? Post it on the iDigBio Georeferencing List Serve

Bring your Datasets and Laptops:

Participants are strongly encouraged to bring representative datasets from their collections that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to work together to address any challenges.

Participants must bring their own laptops and everyone will have wired access to facilitate the best possible workshop experience.

Wireless / Wired Access Issues:

Both wired and wireless access provided to workshop participants. Connectivity instructions will be provided at the workshop.

Workshop Objectives:

Desired Outcomes:

Informal Dinner or social event tbd

Schedule of Events

Breakfast every day is on our own.

Day 1, Tuesday October 4th

Time	Activity	Presenter
8:45	Pick up Name Tags, Wireless Log-In, Wired Setup
9:00	Welcome, Overview and Introduction to iDigBio	iDigBio PI - Katja Seltmann, Debbie Paul, (NCEAS person)
9:15	Trainer Introductions	David Bloom
	Participants Introductions -LBCC TCN	John Brinda, Missouri Botanical Garden
	Participants Introductions - SCAN TCN	Edward Riley, Texas A & M
	Participants Introductions - TTD TCN	Danielle Pace, AMNH
	Participants Introductions - InvertNet TCN	Katrina Menard, Sam Noble Museum
	Participants Introductions - Paleoniches TCN	Michelle Casey, University of Kansas
	Participants Introductions - Georeferencing at the Field Museum	Sharon Grant, Field Museum
	Participants Introductions - Magnolia grandiFLORA	Lisa Wallace, Mississippi State University
	Participants Introductions - FishNet2	Diego Barroso, University of Michigan
	Participants Introductions - Arkansas State University & SERNEC	Kari Harris, Arkansas State University
	Participants Introductions - Macroalgal Herbarium Consortium TCN	Hannah Traggis, University of New Hampshire
	Participants Introductions - All other projects Cathy Bester, iDigBio Mark Uhen, Paleobiology Database - PaleoDB Marcia Revelez, Angelo State Natural History Collections Benjamin Frable, Oregon State Ichthyology Collection J Ryan Allen, University of Colorado Museum of Natural History Rebecca Johansen, Austin Peay State University Ellen Stevens, New York State Museum Bryan Cody, North Carolina State University Jennifer Thomas, University of Kansas Lunide Orleus, University of Florida Mary Barkworth, Utah State University Lawrence Weru, Florida State University Grant Godden, University of Florida Elana Benamy, ANSP at Drexel	Everyone
10:00	Workshop Overview, Introduction to Georeferencing, and Thinking like a Trainer	David Bloom
10:20	Selected Survey Results, Train-the-Trainers Second Georeferencing Pre-workshop Survey Report and Update from TTT1 Participants Pay-It-Forward Efforts	Shari Ellis
10:35	Break
11:00	Georeferencing Introduction: Collaboration to Automation	Dave Bloom
11:30	Geographical Concepts	Nelson Rios
11:50	Point-Radius Method and Best Practices	Jessica Utrup
12:10	Darwin Core Standard, Key Terminology iDigBio Recommended fields	Dave Bloom
12:30	Lunch (Provided)
13:30	Georeferencing Quick Reference Guide, Locality Types, and Georeferencing Template	Una Farrell
14:40	Georeferencing Calculator, Calculator Manual	Dave Bloom
15:30	Break
16:00	Georeferencing Calculator Example and Exercises, MaNIS/HerpNET/ORNIS Georeferencing Guidelines	Dave Bloom
17:00	Day in Review and Considerations for Trainers-to-be Trivia Question of the Day A.M. Recording: Start-10:30 A.M. Recording: 10:40-12:30 P.M. Recording: 1:30-3:30 P.M. Recording 3:30-5:15	David Bloom Debbie Paul
17:30	End

Dinner on our own - See list of local restaurants. You'll be reimbursed at the standard per diem rates.

Optional Evening Activity is: TBA

Day 2, Tuesday August 13th

Time	Activity	Presenter
9:00	Review and Questions	All
9:10	Group Photo	All, Joanna McCaffrey, photographer
9:30	Internet Resources - Where to Begin?	Una Farrell
10:00	Exercises: Internet Resources	All
10:30	Break
11:00	Exercises: Internet Resources (continued)	All
12:15	More Online Resources (resources used by/requested by participants)	David Bloom
12:30	Lunch (Provided)
13:30	GPS Exercise Introduction	Dave Bloom
13:45	GPS Exercises (outside)	All
15:15	Break	All
15:30	Online Exercises Review of known answers	Una Farrell
16:15	Georeferencing Using Paper Maps, Paper Maps Handout	Jessica Utrup
16:45	Day in Review and Considerations for Trainers-to-be Your Input Needed - Mapping Functions in the iDigBio Portal Trivia Question of the Day Hotelwork: create/document your project workflow(s) for discussion on Wednesday A.M. Recording: Start-10:30 A.M. Recording: 10:30-12:30 P.M. Recording: 4:30-5:30	David Bloom Joanna McCaffrey Debbie Paul
17:30	END

Dinner on our own - See list of local restaurants. You'll be reimbursed at the standard per diem rates.

Optional Evening Activities are: TBA

Day 3, Wednesday August 14th

Time	Activity	Presenter
9:00	Review and Questions	All
9:15	GPS Exercise - Review (.kmz), Summary Spreadsheet, Field Worksheet	Dave Bloom
9:35	Exercises: Using Paper Maps	All
10:30	Break
11:00	Exercises: Using Paper Maps (continued)	All
12:30	Lunch on our own. See local restaurant map
13:30	Exercises: Using Paper Maps (continued)	All
14:30	Online Exercises - Participant Georeferences Review Group Results and Answers available upon request	All
14:45	Examples and Discussion: Process, Workflows, Priorities, and Collaborations EMu, KUMIP and Specify FishNet2 ORNIS Workflow and Repatriation Workflows and Expert or Novice: an Experiment in Progress FSU Georeferencing Protocol (Collaborative using GEOLocate) FSU Georeferencing Protocol (Excel and GEOLocate) Online Videos: Georeferencing and Symbiota, Georeferencing and Specify Documentation Check: Short Questionnaire, Long Questionnaire	Jessica Utrup, Una Farrell, Nelson Rios, Deb Paul, Dave Bloom
15:30	Break
16:00	Process, Workflows, Priorities, and Collaborations (continued) Discuss Hotelwork: Participant Project workflow(s) Danielle Pace, AMNH, Arthropod Easy Capture Katrina Menard, Sam Noble Museum Mark Uhen, Paleodb.org	Jessica Utrup, Una Farrell, Nelson Rios, Deb Paul, Dave Bloom
17:00	Day in Review and Considerations for Trainers-to-be, Volunteers for Training Demos Kari Harris, Arkansas State University Edward Riley, Texas A & M Sharon Grant, The Field Museum Marcia Revelez, Angelo State Natural History Collections Trivia Question of the Day A.M. Recording: Start-9:30 P.M. Recording: 2:30-4 P.M. Recording: 4:15-Finish	David Bloom Debbie Paul
17:30	End

Evening Activity is: Group Dinner, Leonardo's 706, 7PM - 9PM, short walk due east of the hotel, on the north side of the street.

Today in Gainesville:
Downtown Gainesville, Union Street Farmers Market, 4 - 7 PM. Food and live music.
http://unionstreetfarmersmkt.com/index.php/vendors

Day 4, Thursday August 15th

Time	Activity	Presenter
9:00	Questions and Review	David Bloom
9:10	Paper Maps Review	Jessica Utrup
9:40	Results: Paper Maps Group Results and Answers available upon request	Dave Bloom
10:30	Break
11:00	Good and Bad Localities, Field Locality Handout, Review of GPS Locality Descriptions	David Bloom
11:30	Introduction to GEOLocate What To Do	Nelson Rios Michelle Vanderwel
12:15	Lunch on our own. See local restaurant map
13:15	Using GEOLocate: Basics (Web Application)	Nelson Rios
13:45	Using GEOLocate: Batch Processing (Web App and Excel)	Nelson Rios
14:25	Using GEOLocate: Collaborative Georeferencing Administrative Portal	Nelson Rios
15:30	Break
16:00	Using GEOLocate: Collaborative Georeferencing Web Client	Nelson Rios
16:20	Advanced GEOLocate: Taxon validation, Web services & integration, Building end-to-end georeferencing workflows Note this topic was covered in a remote recorded session after TTT2.	Nelson Rios
17:00	Day in Review and Considerations for Trainers-to-be Trivia Question of the Day A.M. Recording: Start-10:20 A.M. Recording: 11-12:30 P.M. Recording: 1:30-5	David Bloom Debbie Paul
17:30	End

Dinner on our own - See list of local restaurants. You'll be reimbursed at the standard per diem rates.

Day 5, Friday August 16th

Time	Activity	Presenter
9:00	Review and Questions	David Bloom
9:10	Data Cleaning, Processing, and Analysis Cleaning, Validating, and Enhancing Data with Open Refine sample CSV and sample script to use with this presentation (GPS Vizualizer, Google Refine which is now Open Refine, Example of a Refine Call to GEOLocate, r-project, RStudio, QuantumGIS, QGIS Basic Operations)	Debbie Paul, Nelson Rios, Dave Bloom
10:30	Break
11:00	Open Work Session - Participant/TCN Georeferencing Projects (use those data sets)	All
12:00	Open Work Session (continued)	All
12:30	Lunch on our own. See local restaurant map
13:30	Open Work Session (continued)	All
14:15	Batch Georeferencing in Symbiota	John Brinda, Missouri Botanical Garden
14:30	Volunteer Training Demos - Kari Harris, Arkansas State University (.ppt) Edward Riley, Texas A & M (.ppt) Sharon Grant, The Field Museum (.ppt) Marcia Revelez, Angelo State Natural History Collections (.ppt)	Trainees
15:30	Break
16:00	Post-Workshop Survey	All
16:30	Day in Review and Considerations for Trainers-you-now-be Your Input Needed - Mapping Functions in the iDigBio Portal - Part 2 Trivia Question of the Day	David Bloom Joanna McCaffrey Debbie Paul
17:00	Workshop Summary and Certificates A.M. Recording: 9:30-11 P.M. Recording: 2:15-3:45	All Instructors
17:30	End

Dinner on our own - See list of local restaurants. You'll be reimbursed at the standard per diem rates. Leaving tomorrow? Want to get together for dinner or hang out at the hotel pool?

Optional Friday night activities:
free concerts downtown (same location as the wed night farmers mkt) - http://www.gvlculturalaffairs.org/website/programs_events/plaza_series/plaza.html