Fluid Preserved Invertebrate Imaging: Difference between revisions

From iDigBio
Jump to navigation Jump to search
No edit summary
 
(40 intermediate revisions by 5 users not shown)
Line 1: Line 1:
{| class="wikitable" style="float:right;"
! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Fluid Preserved Invertebrate Imaging
|-
| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE--> [[File: Fluid_Preserved_Logo.PNG ‎|center|300px| ]]<br />
|-
!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Fluid Preserved Invertebrate Imaging Workshop
|-
|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Workshop Agenda]
|-
|[https://www.idigbio.org/biblio?f%5bkeyword%5d=271 Fluid Preserved Invertebrate Imaging Workshop Biblio Entries]
|-
|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Report]
|}
==Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki==
==Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki==
This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.
This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.


==[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]==
==Digitization Training Workshops Wiki Home==
<br />
*[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]
 
==Workshop Announcement==
*[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]
 
==Fluid preserved arthropod imaging Workshop Report]==
*[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report]


==[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]==
==Arthropod and slide imaging interest group wiki==
<br />
*[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki]


==Workshop Agenda and Logistics==
==Workshop Agenda and Logistics==
*[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Tentative Workshop Outline]
*[[Media:InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf|Tentative Workshop Outline]]
*[https://www.idigbio.org/wiki/images/a/a6/Logistics_shuttle_meals.pdf Shuttle info, hotel assignments, and meal plan]
*[[Media:Logistics_shuttle_meals.pdf|Shuttle info, hotel assignments, and meal plan]]
*[https://www.idigbio.org/wiki/images/6/61/Invert_Imaging_Workshop_Participants_Email.pdf A few last-minute logistical details (text of e-mail, 2013-09-04)]
*[[Media:Invert_Imaging_Workshop_Participants_Email.pdf|A few last-minute logistical details (text of e-mail, 2013-09-04)]]
*[http://uunions.umich.edu/league/inn/ Information about Michigan League]
*[http://uunions.umich.edu/league/inn/ Information about Michigan League]
*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel]
*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel]
*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League]
*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League]
*[https://www.idigbio.org/wiki/images/3/3c/Leaguemap.pdf Downloadable pdf map from Bell Tower to Michigan League]
*[[Media:Leaguemap.pdf|Downloadable pdf map from Bell Tower to Michigan League]]
*[https://www.idigbio.org/wiki/images/1/1c/Central_large.pdf U. Michigan Campus map]
*[[Media:Central_large.pdf|U. Michigan Campus map]]
*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology]
*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology]


Line 32: Line 52:
==Presentations==
==Presentations==


*[https://www.idigbio.org/wiki/images/0/03/IDigBio_Intro.pdf Introduction to iDigBio, Gil Nelson]  
*[[Media:IDigBio_Intro.pdf|Introduction to iDigBio, Gil Nelson]]
*[https://www.idigbio.org/wiki/images/0/04/Brantley_InvertImaging_2013.pdf Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]
*[[Media:Brantley_InvertImaging_2013.pdf|Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]]
*[https://www.idigbio.org/wiki/images/3/33/DIY_Techniques.pdf DIY Techniques, Mark O'Brien]
*[[Media:DIY_Techniques.pdf|DIY Techniques, Mark O'Brien]]
*[https://www.idigbio.org/wiki/images/8/87/Patrick_spider_imaging.pdf Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]
*[[Media:Patrick_spider_imaging.pdf|Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]]
*[https://www.idigbio.org/wiki/images/3/30/Scanning_Microscope_Slides_Oboyski.pdf Scanning Microscope Slides, Peter Oboyski]
*[[Media:Scanning_Microscope_Slides_Oboyski.pdf|Scanning Microscope Slides, Peter Oboyski]]
*[https://www.idigbio.org/wiki/images/7/77/Naturalis_microscopic_slides.pdf Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]
*[[Media:Naturalis_microscopic_slides.pdf|Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]]
*[https://www.idigbio.org/wiki/images/d/d7/Hand_sanitizer_Droege.pdf Macro photography in hand sanitizer, Sam Droege]
*[[Media:Hand_sanitizer_Droege.pdf|Macro photography in hand sanitizer, Sam Droege]]
*[https://www.idigbio.org/wiki/images/2/24/Final_Stephanie_Ware_02.pdf Slide imaging at the Field Museum, Stphanie Ware]
*[[Media:Final_Stephanie_Ware_02.pdf|Slide imaging at the Field Museum, Stephanie Ware]]
*[https://www.idigbio.org/wiki/images/b/b2/Hedin_iDigBio_presentation.pdf Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]
*[[Media:IDIGBIO_WORKING.pdf|Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith]]
*[https://www.idigbio.org/wiki/images/2/28/Imaging_Vic_Smith.pdf Fluid-preserved at Cal Academy, Vic Smith]
*[[Media:Brilmyer_idig_bio.pdf|Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer]]
*[https://www.idigbio.org/wiki/images/6/62/Selden.pdf Imaging techniques in the study of fossil spiders, Paul Seldin]
*[[Media:Hedin_iDigBio_presentation.pdf|Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]]
*[https://www.idigbio.org/wiki/images/3/3a/Lightroom_presentation.pdf Processing images with Lightroom, Rich Rabeler]
*[[Media:Selden.pdf|Imaging techniques in the study of fossil spiders, Paul Selden]]
*[[Media:Lightroom_presentation.pdf|Processing images with Lightroom, Rich Rabeler]]
*[[Media:Imaging_Vic_Smith.pdf|Fluid-preserved imaging, Roy Larimer]]
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]
 
== Workshop Recordings ==
 
*[http://idigbio.adobeconnect.com/p38b8xvyben/ Day 1 AM Session 8:15am-10:30am]
*[http://idigbio.adobeconnect.com/p7djloaq40w/ Day 1 AM Session 11am-12:30pm]
*[http://idigbio.adobeconnect.com/p32zu1pozn8/ Day 1 PM Session 4:15pm- 5pm]
 
*[http://idigbio.adobeconnect.com/p92ihei2kp4/ Day 2 AM Session 8:15am- 10:15am]
*[http://idigbio.adobeconnect.com/p8fh0tconam/ Day 2 AM Session 10:30am- 12:15pm]
 
*[http://idigbio.adobeconnect.com/p9bq9n3yadn/ Day 2 PM Lightroom Demo Session]
*[http://idigbio.adobeconnect.com/p1zalz4mex3/ Day 2 PM O'Brien Demo Session]
*[http://idigbio.adobeconnect.com/p4nctnt76u8/ Day 2 PM Closing Session 5pm- 5pm]


==Images for Review==
==Images for Review==
*[https://www.idigbio.org/wiki/images/7/72/08-10-29_Erig_blaesa2_comp.jpg Spider from Sandy Brantley 1]
*[[Media:08-10-29_Erig_blaesa2_comp.jpg|Spider from Sandy Brantley 1]]
*[https://www.idigbio.org/wiki/images/0/04/Xy_cu_07-12-20_114944_R8_S4.jpg Spider from Sandy Brantley 2]
*[[Media:Xy_cu_07-12-20_114944_R8_S4.jpg|Spider from Sandy Brantley 2]]


==Documentation==
==Documentation==
Line 55: Line 91:
*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)]
*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)]
*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)]
*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)]
*[https://www.idigbio.org/wiki/images/1/10/How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]
*[[Media:How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf|Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]]
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images]
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images]
*[https://www.idigbio.org/wiki/images/5/51/Leica_Imaging_Manual_July1_2013.pdf LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Geacen Brilmyer]
*[[Media:Leica_Imaging_Manual_July1_2013.pdf|LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer]]
*[https://www.idigbio.org/wiki/images/a/aa/Ant_Databasing_Protocols_August.pdf Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]
*[[Media:Ant_Databasing_Protocols_August.pdf|Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]]
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]


==Workflow Documents==
==Workflow Documents==
Line 67: Line 104:
*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images]
*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images]
*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page]
*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page]
*[https://www.idigbio.org/wiki/index.php/Dried_Insect_Digitization_Workshop Pinned insect digitization workshop, Chicago, Spring 2013]
*[[Dried Insect Digitization Workshop|Pinned insect digitization workshop, Chicago, Spring 2013]]
*[https://www.idigbio.org/wiki/index.php/Wet_Collections_Digitization_Workshop Wet collections digitization wiki, U. Kansas, March 2013]
*[[Wet Collections Digitization Workshop|Wet collections digitization wiki, U. Kansas, March 2013]]
*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy]
*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy]
*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu]
*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu]
*[http://www.irfanview.com/ IrfanView software for file re-naming]
*[http://www.irfanview.com/ IrfanView software for file re-naming]
*[http://www.barcode-labels.com/ Potential source for bar codes suggested by Mariel Campbell]
*[http://www.barcode-labels.com/ Potential source for bar codes suggested by Mariel Campbell]
*[http://www.gaylord.com/adblock.asp?abid=718&search_by=desc&search_for=selfadhesive%20labels&mpc=WW Potential source for labels suggested by Joost Leusen]

Latest revision as of 15:37, 3 February 2015

Fluid Preserved Invertebrate Imaging
Fluid Preserved Logo.PNG

Quick Links for Fluid Preserved Invertebrate Imaging Workshop
Fluid Preserved Invertebrate Imaging Workshop Agenda
Fluid Preserved Invertebrate Imaging Workshop Biblio Entries
Fluid Preserved Invertebrate Imaging Report

Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki

This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.

Digitization Training Workshops Wiki Home

Workshop Announcement

Fluid preserved arthropod imaging Workshop Report]

Arthropod and slide imaging interest group wiki

Workshop Agenda and Logistics

Nearby (and not-so-nearby) Restaurants

Collaborative Notes Documents

Presentations

Workshop Recordings

Images for Review

Documentation

Workflow Documents

Interesting Sidelights