Data Management Interest Group: Difference between revisions

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*[http://idigbio.adobeconnect.com/p7ht0zf5i7p/ Towards user-definable, semi-automated workflows for curating biodiversity data (recording)]. Presenters (abc order): David Lowery, James A. Macklin, Timothy  McPhillips, Paul J. Morris, Tianghong Song. Recorded 28 May 2015 2 - 4 PM EDT
*[http://idigbio.adobeconnect.com/p7ht0zf5i7p/ Towards user-definable, semi-automated workflows for curating biodiversity data (recording)]. Presenters (abc order): David Lowery, James A. Macklin, Timothy  McPhillips, Paul J. Morris, Tianghong Song. Recorded 28 May 2015 2 - 4 PM EDT
*[http://idigbio.adobeconnect.com/p6dr3k8f7y2/ Improving Data Quality: iDigBio Recordset data cleaning methods, tools, and data flags]. Presenters: Alex Thompson (iDigBio IT), Matt Collins (iDigBio IT), and guests: Heather Appleby and Katja Seltmann. Recorded 23 October 2015 - 2 - 3 PM EDT.
*[http://idigbio.adobeconnect.com/p6dr3k8f7y2/ Improving Data Quality: iDigBio Recordset data cleaning methods, tools, and data flags]. Presenters: Alex Thompson (iDigBio IT), Matt Collins (iDigBio IT), and guests: Heather Appleby and Katja Seltmann. Recorded 23 October 2015 - 2 - 3 PM EDT.
* [http://idigbio.adobeconnect.com/p79nl3ak8x8/ Variations on the theme of tracking loans, gifts, sampling, and more] Presenters: Simon Checksfield with Nicole Fisher, CSIRO; Andrew Bentley from University of Kansas Biodiversity Institute, Specify, and SPNHC; Christine Johnson, Entomology, AMNH; Tiffany Adrain, University of Iowa Paleontology;    Elspeth Haston, RBGE.
*[http://idigbio.adobeconnect.com/p3914lttxpu/ Shaping the semantic layer by mining digitised data: an encounter between iDigBio's plant records and the Environment Ontology (ENVO)] Presenters: Dr. Pier Luigi Buttigieg, HGF-MPG Group for Deep Sea Ecology and Technology, c/o Max Planck Institute for Marine Microbiology, Bremen, Germany, Email: pbuttigi@mpi-bremen.de; and Grant Godden, Research Associate, Michigan State University, Email: goddengr@msu.edu
**If you have ideas for next steps with this work, or would like to be involved in the next steps conversation, please send a note to idigbio@acis.ufl.edu
*[https://vimeo.com/idigbio/review/146166848/bca77fe5f2 DAMmed if you Do or Don't : Archiving, what is it anyway? and just what is a DAM?], by Larry Gall, Yale Peabody Museum, recorded 17 November 2015. 4 - 5 PM EST.
** A ''follow-up'' webinar on this topic, panel-style, is planned for early 2016. Stay tuned for more about this.
* Insights into Inselect Software: automating image processing, barcode reading, and validation of user-defined metadata
** [http://idigbio.adobeconnect.com/p7qo63aeo4a/ Adobe Connect webinar recording]
** [https://vimeo.com/160792078 ​MP4 Version on Vimeo]
** by Lawrence Hudson and Ben Price, Natural History Museum, London. Recorded 29 March, 2016. 11 - 12 PM EDT.
* [http://idigbio.adobeconnect.com/p8dpn6d3oyr Webinar Panel: DAMs and Archival Issues for Large and Small Collections: options, considerations, resources]
** [https://www.idigbio.org/sites/default/files/working-groups/dm/NOAA%20Archiving%20and%20Data%20Mangement.pptx Brian's Presentation]
** [https://www.idigbio.org/sites/default/files/working-groups/dm/DAMs%20and%20Preservica.pptx Euan's Presentation]
** [https://www.idigbio.org/sites/default/files/working-groups/dm/Digital%20Asset%20Presentation.pptx Mike's Presentation]
* from ''Pensoft Publishers'' and ''Biodiversity Data Journal'' Online direct import of specimen records from iDigBio infrastructure into taxonomic manuscripts
**[http://idigbio.adobeconnect.com/p7sg0aym3e3/ Adobe Connect webinar recording] by Viktor Senderov - Marie Curie PhD Student at Pensoft, datascience@pensoft.net and Lyubomir Penev - Managing Directory and Founder of Pensoft Publishers, penev@pensoft.net. Recorded 16 June, 2016. 9 - 10 am EDT.
*[http://idigbio.adobeconnect.com/p2tfsebw717/ Mass Digitizing a Working Herbarium using a conveyor belt: Workflows, Strategies, Challenges] presented by Sylvia Orli, IT and Digitization Manager, US Herbarium, Smithsonian. Recorded 18 October 2016. 3 - 4 PM EDT.
=== Darwin Core Hour Recordings ===
All Darwin Core Hour resources are on or linked through Git Hub https://github.com/tdwg/dwc-qa/wiki/Webinars
* Chapter 0. [http://idigbio.adobeconnect.com/p200obyl8yp/ Introduction to Darwin Core Hour Webinar Series (adobe connect)] presented by John Wieczorek, Paula Zermoglio, and Deborah Paul. Recorded 2017-02-07. On [https://vimeo.com/idigbio/review/203288520/0d6ebbd70c Vimeo as mp4].
* Chapter 1. [http://idigbio.adobeconnect.com/p200obyl8yp/ Introduction to Darwin Core (adobe connect)] presented by John Wieczorek. Recorded 2017-02-07. On [https://vimeo.com/idigbio/review/203288520/0d6ebbd70c Vimeo as mp4]
* Chapter 2. [http://idigbio.adobeconnect.com/p2ewna3h59c/ Even Simple is Hard (adobe connect)] presented by John Wieczorek. Recorded 2017-03-07. On [https://vimeo.com/209909970 Vimeo as mp4]
* Chapter 3. [http://idigbio.adobeconnect.com/p8iboc9x62j/ Thousands of shades for “Controlled” Vocabularies (adobe connect)] presented by Paula Zermoglio. Recorded 2017-04-04. On [https://vimeo.com/album/4407185/video/212404502 Vimeo as mp4]
* Chapter 4a+b. [http://idigbio.adobeconnect.com/p46cvi3c2bi/ Evolution of Darwin Core Terms and Extensions - two extant examples for community input (adobe connect)] presented by Andy Bentley and Quentin Groom. Recorded 2017-05-02. On [https://vimeo.com/216167534 Vimeo as mp4]
* Chapter 5. [http://idigbio.adobeconnect.com/ps7hz22eiyu9 Darwin Core in Practice: Introduction to the GBIF IPT (adobe connect)] presented by Kyle Braak, Laura Russel, and Carole Sinou. Recorded 2017-06-13. On [https://vimeo.com/idigbio/review/221477895/4393ffe9b2 Vimeo as mp4]
* Chapter 6. [http://idigbio.adobeconnect.com/piczk3aht1po Where am I, exactly? Darwin Core geoferencing terms (adobe connect)] presented by David Bloom, Town Peterson, and John Wieczorek. Recorded 2017-07-11. On [https://vimeo.com/225132217 Vimeo as mp4]
* Chapter 7. Aggregators - a Darwin Core View [http://idigbio.adobeconnect.com/pjkbe6j6yljb/?OWASP_CSRFTOKEN=1b2485174a9e340bed05188cff572c35d3aaaac82add77a3f314658e6a7bdef8 Part I: GBIF & iDigBio (adobe connect)] and [http://idigbio.adobeconnect.com/p8j48suki286/ Part II: (More Than Vert)Net (adobe connect)] presented by GBIF, iDigBio, Vertnet, ALA, and Canadensys. Recorded 2017-08-15. On Vimeo as mp4: [https://vimeo.com/229759064 Part I] and [https://vimeo.com/234428277 Part II]
* Chapter 8. [http://idigbio.adobeconnect.com/p8ltdquluyy1/ A bite from the core - testing for data quality (adobe connect)] presented by Lee Belbin and Arthur Chapman. Recorded 2017-09-05 (North America) and 2017-09-06 (Oceania). On [https://vimeo.com/239698443 Vimeo as mp4]
* Chapter 9. [http://idigbio.adobeconnect.com/p1zkmx6is2c6/ Kurator Web: for Cleaner Biodiversity Data (adobe connect)] presented by John Wieczorek. Recorded 2017-10-24. On [https://vimeo.com/239711651 Vimeo as mp4]
* Chapter 10. [http://idigbio.adobeconnect.com/pqw2om865mvv/ Audubon Core and 3D Biodiversity Data: Metadata, Practice, and Unification of Efforts (adobe connect)] presented by Gary Motz and John Wieczorek. Recorded 2017-11-21. On [https://vimeo.com/244677506 Vimeo as mp4]
* Chapter 11. [http://idigbio.adobeconnect.com/pu48ho08pl43/ DwC Hour Brainstorming – Inviting the Community to Plan for Next Year (adobe connect)]. Recorded 2017-12-04. On [https://vimeo.com/245929146 Vimeo as mp4]
* Chapter 12. [http://idigbio.adobeconnect.com/pfvb99zx6nle/ Making DNA and tissue collections available by using the GGBN extensions with IPT (adobe connect)] presented by Gabriela Dröge and Katherine Barker. Recorded 2018-02-21. On [https://vimeo.com/260435567 Vimeo as mp4]
* Chapter 13. [http://idigbio.adobeconnect.com/pskdy7p1yo8m/ The Problem of Time: Dealing with Paleontological and Zooarchaeological Specimens in Darwin Core (adobe connect)] presented by Laura Brenskelle. Recorded 2018-04-24. On [https://vimeo.com/267290743 Vimeo as mp4]
2020 Darwin Core Hours coming soon. Watch this space.


==Collaborative Notes and Interest Group Documents==
==Collaborative Notes and Interest Group Documents==
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*[https://docs.google.com/document/d/1khoQ8yAoO1Oi2fYXcKVWxWUNR9XErN0ajMSOYXJw-cE/edit# DMI Google Doc notes for iDigBio Webinar: Data quality, usage, and issue tracking using GitHub] 23 April 2015
*[https://docs.google.com/document/d/1khoQ8yAoO1Oi2fYXcKVWxWUNR9XErN0ajMSOYXJw-cE/edit# DMI Google Doc notes for iDigBio Webinar: Data quality, usage, and issue tracking using GitHub] 23 April 2015
*[https://docs.google.com/document/d/1hEqOhWe89tm4SOx85SGuc46b1sCRMviKZ3yBwxMknBc/edit DMI Meeting 28 August - Planning a Webinar Series] Group Notes
*[https://docs.google.com/document/d/1hEqOhWe89tm4SOx85SGuc46b1sCRMviKZ3yBwxMknBc/edit DMI Meeting 28 August - Planning a Webinar Series] Group Notes
*[https://docs.google.com/document/d/1P3TGIRcyd3PEEoQXUEKaSlkTJovH_RS0Jzp0Qw_wHxI/edit 9 January 2017 DMI Organizational Meeting Notes]


==Presentations, Posters, Upcoming Topics==
==Presentations, Posters, Upcoming Topics==
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**Check out [https://www.idigbio.org/content/summer-learning-r-clean-data-idigbio-portal-recordset-correction-feature blog post by Heather Appleby and Katja Seltmann] about their experience using the information in the data flags provided by iDigBio. What did they learn? What did we learn at iDigBio? What's next?
**Check out [https://www.idigbio.org/content/summer-learning-r-clean-data-idigbio-portal-recordset-correction-feature blog post by Heather Appleby and Katja Seltmann] about their experience using the information in the data flags provided by iDigBio. What did they learn? What did we learn at iDigBio? What's next?
*[https://www.idigbio.org/content/webinar-variations-theme-tracking-loans-gifts-sampling-and-more Variations on the theme of tracking loans, gifts, sampling, and more]
*[https://www.idigbio.org/content/webinar-variations-theme-tracking-loans-gifts-sampling-and-more Variations on the theme of tracking loans, gifts, sampling, and more]
**Simon Checksfield, Nicole Fisher, Andrew Bentley, Matt Woodburn, Vince Smith, Christine Johnson, Tiffany Adrain, and Elspeth Haston Friday, October 30, 2015, 21:00:00 (UTC)   Wed 5:00 PM  (EDT)   Wed 9:00 PM (Edinburgh)   Thu 8:00 AM (Sydney)
**Simon Checksfield, Nicole Fisher, Andrew Bentley, Matt Woodburn, Vince Smith, Christine Johnson, Tiffany Adrain, and Elspeth Haston Friday, October 30, 2015, 21:00:00 (UTC) Friday 5:00 PM (EDT); Friday 4:00 PM (Kansas City);  Friday 9:00 PM (Edinburgh, London);  Sat 8:00 AM (Sydney)
*A Tale of Two Topics: Archiving, what is it anyway? and just what is a DAM?
***[[Media:2015_iDigBioWebinar_Loans.pdf |Christine Johnson, AMNH]]
** Larry Gall will be presenting on this topic (tentatively scheduled for November 2015)
***[[Media:RBGEWebinariDigBio30Oct2015LoanTracking.pdf |Elspeth Haston, RBGE]]
*[https://www.idigbio.org/content/webinar-shaping-semantic-layer-mining-digitised-data-encounter-between-idigbios-plant Shaping the semantic layer by mining digitised data: an encounter between iDigBio's plant records and the Environment Ontology (ENVO)]
**Dr. Pier Luigi Buttigieg, Max Plank Institute; Tuesday, November 10, 2015 - 9:00am to 10:00am EST
*Announcement: [https://www.idigbio.org/content/webinar-dammed-if-you-do-or-don%E2%80%99t DAMmed if you Do or Don't] : Archiving, what is it anyway? and just what is a DAM?
** PowerPoint [https://www.idigbio.org/sites/default/files/working-groups/DMIg/idigbio-dam-lfg.ppt DAMmed if you Do or Don’t] (ppt) by Larry Gall
** [https://vimeo.com/idigbio/review/146166848/bca77fe5f2 Recording],by Larry Gall (Yale Peabody Museum); Tuesday, 17 November 2015 at 4 PM EST (that's 21:00 UTC).
* DEMO and Webinar Announcement: [https://www.idigbio.org/content/insights-inselect-software-automating-image-processing-barcode-reading-and-validation-user Insights into Inselect Software: automating image processing, barcode reading, and validation of user-defined metadata]
** [[Media:IDigBio_Inselect_Demo.pdf |Insights into Inselect presentation]] (pdf); Tuesday, 29 March 2016 11 AM EDT, 4 PM BST by software developers Lawrence Hudson and Ben Price from the Natural History Museum (NHM) in London.
* from ''Pensoft Publishers'' and ''Biodiversity Data Journal'' Online direct import of specimen records from iDigBio infrastructure into taxonomic manuscripts
**[http://www.idigbio.org/sites/default/files/working-groups/DMIg/iDigBio_Webinar_2.pdf Webinar Presentation (pdf)] by Viktor Senderov - Marie Curie PhD Student at Pensoft, datascience@pensoft.net and Lyubomir Penev - Managing Directory and Founder of Pensoft Publishers, penev@pensoft.net. Recorded 16 June, 2016. 9 - 10 am EDT. ([http://www.idigbio.org/sites/default/files/working-groups/DMIg/iDigBio_Webinar_2.pptx pptx])
*Providing Data to iDigBio - Getting Feedback from iDigBio: Experiencing the Data Life Cycle
*Providing Data to iDigBio - Getting Feedback from iDigBio: Experiencing the Data Life Cycle
** Mare Nazaire (date to be decided after their data is ingested)
** Mare Nazaire (date to be decided after their data is ingested)
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== Potential Topics ==
== Potential Topics ==
*Linking specimens, notes, and literature-- what systems have you found that best serve those linkages?
*Linking specimens, notes, and literature-- what systems have you found that best serve those linkages?
*More about Archiving Options and Challenges
*Macroalgal TCN using Voice Recognition and OCR output to speed up digitization
*Macroalgal TCN using Voice Recognition and OCR output to speed up digitization


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