Data Carpentry: Difference between revisions
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*Remote can join those present for notes in (Google Doc) or (MoPad)? | *Remote can join those present for notes in (Google Doc) or (MoPad)? | ||
==Presentation Documents== | ==Presentation Documents and Links== | ||
*links to any presentations (like power points) here. | *links to any presentations (like power points) here. | ||
*[https://github.com/datacarpentry/2014-09-29-iDigBio GitHub repository for Data Carpentry Workshop at iDigBio] | |||
==Workshop Recordings== | ==Workshop Recordings== | ||
Revision as of 18:46, 3 September 2014
This wiki supports the Data Carpentry Workshop to be held at the University of Florida at iDigBio September 29-30, 2014. It is the first in a series of four biodiversity informatics workshops planned in the upcoming year (2014-2015).
Digitization Training Workshops Wiki Home
Planning Team
- François Michonneau (FLMNH - iDigBio)
- Katja Seltmann (TTD-TCN, AMNH)
- Matt Collins (ACIS - iDigBio)
- Dan Stoner (ACIS - iDigBio)
- Deborah Paul (FSU - iDigBio)
- Tracy K. Teal (BEACON)
- Pam Soltis (FLMNH - iDigBio PI)
- Derek Masaki (USGS)
- Shari Ellis (iDigBio)
- Kevin Love (iDigBio)
- Mike Smorul (SESYNC)
- Juliet Pulliam (UF)
- and assistance from Nirav Merchant at iPlant.
Workshop Evaluation
- link to pre-workshop survey
- link here at end of workshop
Agenda
- pre-workshop meeting (online) http://idigbio.adobeconnect.com/e4r9cm91cjg/event/login.html
- Software installed?
- Instructors available
- Questions?
- pre-workshop meeting / dinner day before
- All welcome. Place/time TBA.
| Course Overview - Day 1 | ||
|---|---|---|
| 8:30-9:00 | Introductions / Overview / Why Data Carpentry? / How to organize data projects | All |
| 9:00-10:00 | Better use of spreadsheets, part I | Tracy Teal |
| 10:00-10:30 | Break | |
| 10:30-12:00 | Better use of spreadsheets part II | Tracy Teal |
| 12:00-1:30 | Lunch (with OpenRefine Demo) | Deb Paul |
| 1:30-3:00 | SQL Introduction | Matt Collins |
| 3:00-3:30 | Break | |
| 3:30-5:00 | SQL part II | Matt Collins |
| 5:00-5:30 | Review / Wrap up for tomorrow | |
| Course Overview - Day 2 | ||
| 8:30-10:00 | Introduction to the shell | Tracy Teal |
| 10:00-10:30 | Break | |
| 10:30-12:00 | Introduction to R | François Michonneau |
| 12:00-1:30 | Lunch (Demo) | |
| 1:30-3:00 | Manipulating and plotting data in R | François Michonneau |
| 3:00-3:30 | Break | |
| 3:30-4:30 | Getting data in and out of R: How to integrate R in your workflow | François Michonneau |
| 4:30-5:00 | Sharing your data and your results: RMarkdown and Figshare | François Michonneau |
| 5:00-5:30 | Review / Wrap up / Evaluation and Feedback | |
Future plan: Scaling it up: Demo using the iPlant Discovery Environment (DE)
Link to Workshop Report
Logistics
- Logistics
- Hotel (for the out-of-towners)
- Where to find food
- Workshop Announcement
Remote Participation
Remote participation will be provided via Adobe Connect: [room URL to be decided]
- Remote can join those present for notes in (Google Doc) or (MoPad)?
Presentation Documents and Links
- links to any presentations (like power points) here.
- GitHub repository for Data Carpentry Workshop at iDigBio
Workshop Recordings
Day 1
- [8:30am-10:00am]
- [10:30am-12:00pm]
- [1:00pm-3:00pm]
- [3:30-6pm]
Day2
- [8:30am-10:00am]
- [10:30am-12:00pm]
- [1:00pm-3:00pm]
- [3:30-6pm]
Data Carpentry Resources and Links
- Inaugural Data Carpentry Workshop by Tracy K. Teal
- Our First Data Carpentry Workshop by Karen Cranston
- Tales from the First Data Carpentry Workshop by Deb Paul
- EtherPad document for workshop notes
- Data Carpentry Materials on GitHub
- Ten Simple Rules for the Care and Feeding of Scientific Data. Goodman et al
- Code and Data for the Social Sciences: A Practitioner's Guide. Matthew Gentzkow, Jesse M. Shapiro Chicago Booth and NBER March 10,2014
- Nine simple ways to make it easier to (re)use your data. White et al.