Coding Phenological Data from Herbarium Sheets: Difference between revisions

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Coding Phenological Data from Herbarium Sheets (view source)

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|style="vertical-align:top;"|7:00-8:00 a.m.
|style="vertical-align:top;"|7:00-8:00 a.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Breakfast at Jepson Herbarium
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Breakfast at University and Jepson Herbaria
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|style="vertical-align:top;"|9:40-10:00 a.m.
|style="vertical-align:top;"|9:40-9:55 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|iDigBio introduction <br>
How data moves from database to aggregators, to iDigBio.
|Gil Nelson<br> iDigBio, Florida State University
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|style="vertical-align:top;"|10:00-10:15 a.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Break
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Break
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|style="vertical-align:top;"|10:15-11:15
|style="vertical-align:top;"|9:55-10:50
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Discussion of Survey Results (provided in packet)<br>&bull;Analysis of data gaps<br>•Draft priorities in groups<br>•Flora of North America
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Discussion of Survey Results (provided in packet)<br>&bull;Analysis of data gaps<br>•Draft priorities in groups<br>•Flora of North America
|Jenn Yost, moderator
|Jenn Yost, moderator
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|style="vertical-align:top;"|10:15-11:35<br>11:35-11:55
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|style="vertical-align:top;"|10:50-11:15 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|iDigBio introduction <br>
How data moves from database to aggregators, to iDigBio.
|Gil Nelson<br> iDigBio, Florida State University
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|style="vertical-align:top;"|11:15-11:35<br>11:35-11:55
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Data standards community<br>•Darwin Core<br>•Apple Core
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Data standards community<br>•Darwin Core<br>•Apple Core
|John Wieczorek<br>James Macklin
|John Wieczorek<br>James Macklin
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|style="vertical-align:top;"|12:00-1:15 p.m.
|style="vertical-align:top;"|12:00-1:15 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Lunch and Tour the Herbarium
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Lunch and Tour the University and Jepson Herbaria
|Brent Mishler is giving a 20 minute tour
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|style="vertical-align:top;"|1:35-1:55 p.m.  
|style="vertical-align:top;"|1:35-2:00 p.m.  
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;|Tri-Trophic Interactions Experience with DwC extension
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;|NEVP and Symbiota
|Katja Seltmann<br>University of California, Santa Barbara
|Patrick Sweeney, Yale<br>Ed Gilbert, Symbiota
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|style="vertical-align:top;"|1:55-2:15 p.m.
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|style="vertical-align:top;"|2:15-2:45 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;|NEVP and Symtiota
|Patrick Sweeney, Yale<br>Ed Gilbert, Symbiota
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|style="vertical-align:top;"|2:00-2:45 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Plenary Discussion
|Jenn and Gil, moderate
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|style="vertical-align:top;"|4:00-5:00 p.m.
|style="vertical-align:top;"|4:00-5:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| Discussion of ….<br>Priority ranking<br>Metrics to score<br>Vocabulary<br>Propose fields/define fields<br>Scoring from images v. specimens<br><br>Daily Wrap-up/Q&A<br>Plans for Day 2<br>Create groups/topics for tomorrow
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| Group Discussion<br><br>Priority ranking<br>Metrics to score<br>Vocabulary<br>Propose fields/define fields<br>Scoring from images v. specimens<br><br>Daily Wrap-up/Q&A<br>Plans for Day 2<br>Create groups/topics for tomorrow
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|style="vertical-align:top;"|7:00-8:00 a.m.
|style="vertical-align:top;"|7:00-8:00 a.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Breakfast at Jepson Herbarium
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Breakfast at University and Jepson Herbaria
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|style="vertical-align:top; text-align: left;"|9:00-11:00 a.m.
|style="vertical-align:top; text-align: left;"|9:00-9:30 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Breakout Session #2<br>Groups formed around taxonomic groups: Angiosperms, grasses/sedges/rushes, Gymnosperms, and others formed on day 1.<br>Vegetative scoring from sheets: Is this worth it?<br>Draft of pros/cons of using specimens for phenology research.<br>Draft methods recorded on how to score that group, what to prioritize.<br>Draft issues regarding phenology from specimens.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Breakout Session #2
Do our draft methods work?<br>By area of expertise<br>Data Standards<br>Collections<br>Research<br>Field Programs
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|style="vertical-align:top;"|9:30-10:00 p.m.
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Regroup to address issues and break
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|style="vertical-align:top;"|10:00-11:00 p.m.
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Breakout #3<br>1) Data Standards group<br>2) Database group<br><br>Groups formed around taxonomic groups:<br>3) “Normal” Angiosperms<br>4) Grasses/sedges/rushes<br>5) Gymnosperms<br>6) Wind-pollinated non-grasses<br>7) Other?
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|style="vertical-align:top;"|11:00-12:00 p.m.
|style="vertical-align:top;"|11:00-12:00 p.m.
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Next steps forward with DarwinCore - <br>Set our DwC working group<br>Check in: Do our draft methods require revision?<br>How do our draft terms fit with current DwC?
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Next steps forward with DarwinCore - Set our DwC working group<br>Check in: Do our draft methods<br>require revision?<br>How do our draft terms fit with current DwC?
|John Wieczorek<br>James Macklin
|John Wieczorek<br>James Macklin
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|style="vertical-align:top;"|12:00-1:00 p.m.
|style="vertical-align:top;"|12:00-1:00 p.m.
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|style="vertical-align:top;"|2:00-3:00 p.m.
|style="vertical-align:top;"|2:00-3:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Mapping to Field Data - work in groups<br>(using Google sheet)
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Breakout #4<br>1) Draft Introduction to justify our work<br>Draft finalized protocols<br>2) Draft Collections ISSUES document<br>3) Draft Research ISSUES document
<br>Mapping to Field Data - work in groups<br>4) BBCH term mapping<br>5) NPN term mapping
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==Workshop Participants==
*Alycia Crall, National Ecological Observatory Network
*Amanda Gallinat, Boston University
*Ashley Morris, Middle Tennessee State University, SouthEast Regional Network of Expertise and Collections (SERNEC)
*Ben Anhalt, Specify Database
*Brent Mishler, UC Berkeley, Consortium of California Herbaria (CCH)
*Brian Stucky, University of Florida, Plant Phenology Ontology
*Charlie Willis, Harvard University Herbaria
*Constantin Zohner, Ludwig-Maximilians-Universität München
*Debra Trock, California Academy of Sciences
*David Baxter, UC Berkeley, CCH
*Edward Gilbert , Arizona State University, Symbiota
*Ellen Dean, UC Davis Herbarium
*Ellen Denny, USA National Phenology Network
*Elspeth Haston, The Royal Botanic Garden Edinburgh
*Gil Nelson, Florida State University, iDigBio
*Greg Riccardi, Florida State University, iDigBio
*James Macklin, Agriculture and Agri-food Canada, Apple Core
*Jenn Yost, Cal Poly State University, San Luis Obispo
*Jillian Goodwin, Florida Museum of Natural History, iDigBio
*John Wieczorek, UC Berkeley, Museum of Vertebrate Zoology, Darwin Core Representative
*Katelin Stanley, Florida State University, WeDigBio
*Kevin Browne, University of California, Natural Reserve System
*Kjell Bolmgren, Swedish University of Agricultural Sciences, PEP725 - Pan European Phenology Project
*Libby Ellwood, Florida State University, iDigBio
*Mare Nazaire, Rancho Santa Ana Botanic Garden
*Marie Keatley, University of Melbourne
*Michael Denslow, Appalachian State University (SERNEC), University of Florida (Notes from Nature)
*Natalie Rossington, UC Santa Barbara
*Pam Soltis, University of Florida, iDigBio
*Patrick Sweeney, Yale Peabody Museum of Natural History, Mobilizing New England Vascular Plant Specimen Data to Track Environmental Changes (NEVP)
*Ramona Walls, CyVerse, Plant Phenology Ontology
*Richard Carter, Valdosta State University
*Robert Guralnick, Florida Museum of Natural History
*Staci Markos, UC Berkeley, CCH
*Stanley Blum, Biodiversity Information Standards (TDWG)
*Susan Mazer, UC Santa Barbara, National Phenology Network - California Phenology Project
*Tim Sparks, Coventry University
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