Coding Phenological Data from Herbarium Sheets: Difference between revisions

Jump to navigation Jump to search

Coding Phenological Data from Herbarium Sheets (view source)

Revision as of 09:15, 3 January 2018

4,781 bytes added ,  3 January 2018
→‎Workshop Participants
 
(81 intermediate revisions by 4 users not shown)
Line 1: Line 1:
==Logistics==
==Logistics==
*[[Media:LOGISTICS Berkeley Phenology 2016.pdf|Workshop Logistics Document]]
*[[Media:LOGISTICS_Berkeley_Phenology_2016.pdf|Workshop Logistics Document]]
*[[Media: UC_Berkeley_Parking_Information.pdf|UC Berkeley Parking Information]]
*[[Media: UC_Berkeley_Parking_Information.pdf|UC Berkeley Parking Information]]
*[http://hoteldurantberkeley.com/ Hotel information]
*[http://hoteldurantberkeley.com/ Hotel information]
*[http://www.bart.gov/ Mass Transit information]
*[http://www.bart.gov/ Mass Transit information]
*[https://www.idigbio.org/content/developing-standards-coding-phenological-data-herbarium-specimens/ Original workshop announcement]
*[https://www.idigbio.org/content/developing-standards-coding-phenological-data-herbarium-specimens/ Original workshop announcement]
==Workshop Materials==
*[https://drive.google.com/drive/folders/0B9Wk_CFT8G2KUXZDdFJDVENvd2s/ Google doc- Herbarium Phenology Workshop Materials]


==Agenda, Day 1<br>Saturday, March 12, 2016==
==Agenda, Day 1<br>Saturday, March 12, 2016==
Line 16: Line 19:
|-
|-
|style="vertical-align:top;"|7:00-8:00 a.m.
|style="vertical-align:top;"|7:00-8:00 a.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Breakfast at Herbaria
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Breakfast at University and Jepson Herbaria
|-
|-
|-
|-
Line 25: Line 28:
|-
|-
|style="vertical-align:top; text-align: left;"|8:10 - 8:20 a.m.
|style="vertical-align:top; text-align: left;"|8:10 - 8:20 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Background/ Orientation to workshop<br> Workshop goals and products
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Background/Orientation to workshop<br> Workshop goals and products
|Jenn Yost<br>Cal Poly
|Jenn Yost<br>Cal Poly
|-
|-
Line 34: Line 37:
|-
|-
|-
|-
|style="vertical-align:top;"|9:40-10:00 a.m.
|style="vertical-align:top;"|9:40-9:55 a.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Break
|-
|-
|style="vertical-align:top;"|9:55-10:50
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Discussion of Survey Results (provided in packet)<br>&bull;Analysis of data gaps<br>•Draft priorities in groups<br>•Flora of North America
|Jenn Yost, moderator
|-
|-
|style="vertical-align:top;"|10:50-11:15 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|iDigBio introduction <br>
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|iDigBio introduction <br>
How data moves from database to aggregators, to iDigBio.
How data moves from database to aggregators, to iDigBio.
Line 40: Line 52:
|-
|-
|-
|-
|style="vertical-align:top;"|10:00-10:15 a.m.
|style="vertical-align:top;"|11:15-11:35<br>11:35-11:55
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|BREAK
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Data standards community<br>•Darwin Core<br>•Apple Core
|John Wieczorek<br>James Macklin
|-
|-
|-
|-
|style="vertical-align:top;"|10:15-12:00
|style="vertical-align:top;"|12:00-1:15 p.m.
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Discussion<br>*Discussion of Survey Results (provided in packet)<br>*Analysis of data gaps<br>*Draft priorities in groups<br>*Flora of North America
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Lunch and Tour the University and Jepson Herbaria
|Jenn Yost, moderator
|Brent Mishler is giving a 20 minute tour
|-
|-
|-
|-
|style="vertical-align:top;"|12:00-1:15 p.m.
|style="vertical-align:top;"|1:15-1:35 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Lunch and Tour the Herbarium
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;|Data standards community<br>•Plant Phenology Ontology
|Ramona Walls
|-
|-
|-
|-
|style="vertical-align:top;"|<br>1:15-1:35 p.m. <br> 1:35-1:55 p.m. <br> 1:55-2:15 p.m.
|style="vertical-align:top;"|1:35-2:00 p.m.  
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Data standards community <br>*Darwin Core <br> *Apple Core <br> *Plant Phenology Ontology
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;|NEVP and Symbiota
|John Wieczorek<br> Rob- Plant Ontology <br> James Macklin <br>Patrick Sweeney, Yale <br> Ed Gilbert, Symbiota
|Patrick Sweeney, Yale<br>Ed Gilbert, Symbiota
|-
|-
|-
|-
|style="vertical-align:top;"|2:15-2:45 p.m.
|style="vertical-align:top;"|2:00-2:45 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|NEVP and Symbiota
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Plenary Discussion
|Patrick Sweeney, Yale <br> Ed Gilbert, Symbiota
|Jenn and Gil, moderate
|-
|-
|-
|-
Line 69: Line 83:
|style="vertical-align:top;"|3:00-4:00 p.m.
|style="vertical-align:top;"|3:00-4:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Breakout Session #1
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Breakout Session #1
First breakout around taxonomic groups. <br>With curator (according to expertise), <br>a data standards person, and a research person. <br>Work through Google folder forms.
Use specimens to assess and draft scoring schema, and rank according to priorities.Work in Google folder.  
|
|
|-
|-
|-
|-
|style="vertical-align:top;"|4:00-5:00 p.m.
|style="vertical-align:top;"|4:00-5:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| Discussion of ….<br>Priority ranking<br>Metrics to score<br>Vocabulary<br>Propose fields/define fields<br>Scoring from images v. specimens<br><br>Daily Wrap-up/Q&A<br>Plans for Day 2<br>Create groups/topics for tomorrow
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"| Group Discussion<br><br>Priority ranking<br>Metrics to score<br>Vocabulary<br>Propose fields/define fields<br>Scoring from images v. specimens<br><br>Daily Wrap-up/Q&A<br>Plans for Day 2<br>Create groups/topics for tomorrow
|
|-
|-
|style="vertical-align:top;"|3:00-3:30 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|BREAK
|-
|-
|style="vertical-align:top;"|3:30-4:30 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|
|-
|-
|style="vertical-align:top;"|4:30-4:45 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|
|-
|-
|style="vertical-align:top;"|4:45-5:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|
|
|-
|-
|-
|-
|rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own
|rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own<br>Recommended gathering place: [http://www.jupiterbeer.com/ Jupiter (http://www.jupiterbeer.com/)]
|-
|-
|}
|}
Line 103: Line 98:
==Agenda, Day 2<br>Sunday, March 13, 2016==
==Agenda, Day 2<br>Sunday, March 13, 2016==
{| class="wikitable" style="background-color:#FFF8DC;"
{| class="wikitable" style="background-color:#FFF8DC;"
!colspan="3" | Day One
!colspan="3" | Day Two
|-
|-
! scope="col" | Time  
! scope="col" | Time  
Line 110: Line 105:
|-
|-
|-
|-
|style="vertical-align:top;"|6:30 - 7:30 a.m.
|style="vertical-align:top;"|7:00-8:00 a.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Breakfast at University and Jepson Herbaria
|-
|-
|style="vertical-align:top;"|8:00-9:00 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Discussion from Day 1 and steps forward<br>Form groups or make new groups.
|Gil Nelson, Moderator
|-
|-
|-
|-
|style="vertical-align:top;"|8:00-8:15 a.m.
|style="vertical-align:top; text-align: left;"|9:00-9:30 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Breakout Session #2
Do our draft methods work?<br>By area of expertise<br>Data Standards<br>Collections<br>Research<br>Field Programs
|
|
|-
|-
|-
|-
|style="vertical-align:top; text-align: left;"|8:15-9:00 a.m.
|style="vertical-align:top;"|9:30-10:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Regroup to address issues and break
|
|
|-
|-
|-
|-
|style="vertical-align:top;"|9:00-10:00 a.m.
|style="vertical-align:top;"|10:00-11:00 p.m.
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Breakout #3<br>1) Data Standards group<br>2) Database group<br><br>Groups formed around taxonomic groups:<br>3) “Normal” Angiosperms<br>4) Grasses/sedges/rushes<br>5) Gymnosperms<br>6) Wind-pollinated non-grasses<br>7) Other?
|
|
|-
|-
|-
|-
|style="vertical-align:top;"|10:00-10:30 a.m.
|style="vertical-align:top;"|11:00-12:00 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|BREAK
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Next steps forward with DarwinCore - Set our DwC working group<br>Check in: Do our draft methods<br>require revision?<br>How do our draft terms fit with current DwC?
|John Wieczorek<br>James Macklin
|-
|style="vertical-align:top;"|12:00-1:00 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Lunch
|-
|-
|-
|-
|style="vertical-align:top;"|10:30-11:30 a.m.
|style="vertical-align:top;"|1:00-2:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Next steps forward for databases<br>(Symbiota, Specify, iDigBio)
|
|
|-
|-
|-
|-
|style="vertical-align:top;"|11:30-12:00 a.m.
|style="vertical-align:top;"|2:00-3:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Breakout #4<br>1) Draft Introduction to justify our work<br>Draft finalized protocols<br>2) Draft Collections ISSUES document<br>3) Draft Research ISSUES document
<br>Mapping to Field Data - work in groups<br>4) BBCH term mapping<br>5) NPN term mapping
|
|
|-
|-
|-
|-
|style="vertical-align:top;"|12:00-1:00 p.m.
|style="vertical-align:top;"|3:00-3:15 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|LUNCH
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Break
|-
|-
|-
|-
|style="vertical-align:top;"|1:00-3:00 p.m.
|style="vertical-align:top;"|3:15-4:15 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Finalize drafts of methods, utility of <br>specimens for phenology research
|
|
|-
|-
|-
|-
|style="vertical-align:top;"|3:00-3:30 p.m.
|style="vertical-align:top;"|4:15-5:00 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|BREAK
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Summary of next steps
|-
|-
|rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own
|-
|}
 
{| class="wikitable" style="background-color:#FFF8DC;"
!colspan="6" | Day 1: First break out groups
|-
! scope="col" |
! scope="col" |Group 1
! scope="col" |Group 2
! scope="col" |Group 3
! scope="col" |Group 4
! scope="col" |Group 5
|-
|-
|style="vertical-align:top;"|Database
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Ed Gilbert
|David Baxter
|Ben Anhalt<br> Greg Riccardi
|Gil Nelson
|Ramona Walls <br> Michael Denslow
|-
|-
|style="vertical-align:top;"|Standards
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Stanley Blum
|Brian Stucky
|James Macklin <br> Ashley Morris
|Katja Seltman
|Katie Stanley <br> John Wieczorek
|-
|-
|-
|-
|style="vertical-align:top;"|3:30-5:00 p.m.
|style="vertical-align:top;"|International
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Kjell Bolmgren
|Marie Keatley
|Tim Sparks
|Constantin Zohner
|
|
|-
|-
|-
|-
|rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own
|style="vertical-align:top;"|Field Data
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Alycia Crall
|Ellen Denny
|Kathy Gerst
|Susan Mazer
|Jill Goodwin
|-
|-
|style="vertical-align:top;"|Herbaria
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Ellen Dean <br> Charlie Willis <br> Staci Markos
|Natalie Rossington <br> Richard Carter
|Amanda Gallinat <br> Debra Trock
|Jenn Yost <br> Patrick Sweeney <br> Mare Nazaire
|Brent Mishler <br> Libby Ellwood
|-
|}
 
==Workshop Participants==
*Alycia Crall, National Ecological Observatory Network
*Amanda Gallinat, Boston University
*Ashley Morris, Middle Tennessee State University, SouthEast Regional Network of Expertise and Collections (SERNEC)
*Ben Anhalt, Specify Database
*Brent Mishler, UC Berkeley, Consortium of California Herbaria (CCH)
*Brian Stucky, University of Florida, Plant Phenology Ontology
*Charlie Willis, Harvard University Herbaria
*Constantin Zohner, Ludwig-Maximilians-Universität München
*Debra Trock, California Academy of Sciences
*David Baxter, UC Berkeley, CCH
*Edward Gilbert , Arizona State University, Symbiota
*Ellen Dean, UC Davis Herbarium
*Ellen Denny, USA National Phenology Network
*Elspeth Haston, The Royal Botanic Garden Edinburgh
*Gil Nelson, Florida State University, iDigBio
*Greg Riccardi, Florida State University, iDigBio
*James Macklin, Agriculture and Agri-food Canada, Apple Core
*Jenn Yost, Cal Poly State University, San Luis Obispo
*Jillian Goodwin, Florida Museum of Natural History, iDigBio
*John Wieczorek, UC Berkeley, Museum of Vertebrate Zoology, Darwin Core Representative
*Katelin Stanley, Florida State University, WeDigBio
*Kevin Browne, University of California, Natural Reserve System
*Kjell Bolmgren, Swedish University of Agricultural Sciences, PEP725 - Pan European Phenology Project
*Libby Ellwood, Florida State University, iDigBio
*Mare Nazaire, Rancho Santa Ana Botanic Garden
*Marie Keatley, University of Melbourne
*Michael Denslow, Appalachian State University (SERNEC), University of Florida (Notes from Nature)
*Natalie Rossington, UC Santa Barbara
*Pam Soltis, University of Florida, iDigBio
*Patrick Sweeney, Yale Peabody Museum of Natural History, Mobilizing New England Vascular Plant Specimen Data to Track Environmental Changes (NEVP)
*Ramona Walls, CyVerse, Plant Phenology Ontology
*Richard Carter, Valdosta State University
*Robert Guralnick, Florida Museum of Natural History
*Staci Markos, UC Berkeley, CCH
*Stanley Blum, Biodiversity Information Standards (TDWG)
*Susan Mazer, UC Santa Barbara, National Phenology Network - California Phenology Project
*Tim Sparks, Coventry University
Retrieved from "http://www.idigbio.org/wiki/index.php/Special:MobileDiff/19919...26318"

Navigation menu