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Georeferencing for Research Use: Difference between revisions
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= Post Workshop Publication = | |||
Organizers and participants co-wrote a summation from this workshop of lessons learned and key observations and published these results as | |||
*Seltmann K, Lafia S, Paul D, James S, Bloom D, Rios N, Ellis S, Farrell U, Utrup J, Yost M, Davis E, Emery R, Motz G, Kimmig J, Shirey V, Sandall E, Park D, Tyrrell C, Thackurdeen R, Collins M, O'Leary V, Prestridge H, Evelyn C, Nyberg B (2018) Georeferencing for Research Use (GRU): An integrated geospatial training paradigm for biocollections researchers and data providers. Research Ideas and Outcomes 4: e32449. https://doi.org/10.3897/rio.4.e32449 | |||
== iDigBio - CCBER GWG Georeferencing for Research Use, a short course == | == iDigBio - CCBER GWG Georeferencing for Research Use, a short course == | ||
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!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for GWG Second Train the Trainers Workshop | !colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for GWG Second Train the Trainers Workshop | ||
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|Georeferencing for Research Use - link to agenda | |[[Georeferencing_for_Research_Use#Schedule_of_Events_-_Agenda|Georeferencing for Research Use - link to agenda]] | ||
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|Biblio entries<br> | |Biblio entries<br> | ||
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|[https://www.idigbio.org/content/georeferencing-and-visualizing-biodiversity-data-research Georeferencing for Research Use, short course report] | |[https://www.idigbio.org/content/georeferencing-and-visualizing-biodiversity-data-research Georeferencing for Research Use, short course report] | ||
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[[Category:Workshop]] | [[Category:Workshop]][[Category:Georeferencing]][[Category:Research]] | ||
[[File:Capture.PNG|200px|thumb|right|hotel and NCEAS map]] | [[File:Capture.PNG|200px|thumb|right|hotel and NCEAS map]] | ||
October 4 - 7, 2016 at (https://www.nceas.ucsb.edu/) NCEAS, Santa Barbara California | October 4 - 7, 2016 at (https://www.nceas.ucsb.edu/) NCEAS, Santa Barbara California | ||
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After the workshop, we will encourage our participants to share use cases, any training materials developed, and to offer workshops, webinars, talks, or other events aimed at increasing use of best practices for georeferencing legacy locality data, best practices for capturing the locality data from future biological and paleontological collecting and sampling events, and best practices for using the data in research. | After the workshop, we will encourage our participants to share use cases, any training materials developed, and to offer workshops, webinars, talks, or other events aimed at increasing use of best practices for georeferencing legacy locality data, best practices for capturing the locality data from future biological and paleontological collecting and sampling events, and best practices for using the data in research. | ||
Some anticipated course content includes discussion and activities about georeferencing integration, georeferenced data visualization, and georeferences for modeling and research | Some anticipated course content includes discussion and activities about georeferencing integration, georeferenced data visualization, and georeferences for modeling and research. | ||
=== Logistics: === | === Logistics: === | ||
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=== Course Instructor List === | === Course Instructor List === | ||
(''in alphabetical order'') David Bloom, Matt Collins, Shelley James, Sara Lafia, Deborah Paul, Marcy Revelez, Nelson Rios, Katja Seltmann, Jessica Utrup, Mike Yost | (''in alphabetical order'') David Bloom, Matt Collins, Una Farrell, Shelley James, Sara Lafia, Deborah Paul, Marcy Revelez, Nelson Rios, Katja Seltmann, Jessica Utrup, Mike Yost | ||
=== Bring your Datasets and Laptops: === | === Bring your Datasets and Laptops: === | ||
'''Participants are strongly encouraged to bring representative datasets''' from their collections or research that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to work together to address any challenges. | '''Participants are strongly encouraged to bring representative datasets''' from their collections or research that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to work together to address any challenges. | ||
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== Goals of the Workshop: == | == Goals of the Workshop: == | ||
*Best practices for researchers for in-the-field creating of new locality data and legacy data georeferencing. | |||
**Tools (hardware and software) and standards (what to document, datum etc.). | |||
**How to re-patriate data and/or best practices for putting data into data repository if can’t be repatriated (what the obstacles are and minimization of data loss). | |||
*How to evaluate already georeferenced data. Current tools for visualization and evaluation. | |||
**Metrics to look for | |||
**Current tools for georeferencing | |||
**Online tools | |||
**R | |||
**QGIS | |||
*Researchers give input on the challenges for georeferencing, using existing georeferences. | |||
*Workflow review for some research review of using georeferenced data (Katja, Shelley, ...) | |||
Ultimate goal: Participant can point to aspects they have learned (tool, standard etc.) during the workshop and can indicate how they will use those aspects for their research goal/purpose (present or future). | |||
== Workshop Objectives: == | == Workshop Objectives: == | ||
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*Hands-on practice & case studies<br> | *Hands-on practice & case studies<br> | ||
== Schedule of Events - Agenda == | |||
== Schedule of Events - Agenda | |||
Breakfast, Lunch and Dinner every day is on our own (not provided). | Breakfast, Lunch and Dinner every day is on our own (not provided). | ||
=== Day 1, Tuesday October 4th === | === Day 1, Tuesday October 4th === | ||
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* [https://github.com/iDigBio/idigbio-search-api/wiki/Data-Quality-Flags List of iDigBio Flags]: | * [https://github.com/iDigBio/idigbio-search-api/wiki/Data-Quality-Flags List of iDigBio Flags]: | ||
* Walk through steps of download, but provide dataset. | * Walk through steps of download, but provide dataset. | ||
* Data set: http://s.idigbio.org/idigbio-downloads/a69d1541-4726-465d-84ad-50c7ed556eee.zip | * iDigBio Data set: http://s.idigbio.org/idigbio-downloads/a69d1541-4726-465d-84ad-50c7ed556eee.zip | ||
|Matthew Collins (remote), Katja Seltmann, Shelley James<br> | |Matthew Collins (remote), Katja Seltmann, Shelley James<br> | ||
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| 13:00<br> | | 13:00<br> | ||
| Cleaning Datasets: Spreadsheets, Open Refine, tracking your work (2)<br> | | [https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/GRU_spreadsheetsRefine6Oct2016.pptx Cleaning Datasets: Spreadsheets, Open Refine, tracking your work] (2)<br> | ||
| Deb Paul, Nelson Rios, Katja Seltmann<br> | | Deb Paul, Nelson Rios, Katja Seltmann<br> | ||
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<br/> | <br/> | ||
Some software [http://www.datacarpentry.org/workshop-template/install.html install instructions] from Data and Software Carpentry | Some software [http://www.datacarpentry.org/workshop-template/install.html install instructions] from Data and Software Carpentry | ||
== Requests for the Future == | |||
* Scripts/tools for repeated cleaning/analysis | |||
* Using the iDigBio API (API for dummies) | |||
* Inselect (note we provided links for more on this tool - to the workshop participants, see [https://docs.google.com/document/d/1m9cdERGtJkukb3EHUXPmCg58G08WWMA2HyBv28k6PUo/edit?usp=sharing google doc]) | |||
* Automated data cleaning - iDigBio and VertNet activities | |||
* What to do with quantified uncertainties & polygons - Jorge Soberon (KU team, others in the fitness for use GBIF working group - see [https://www.gbif.org/document/82612/report-of-the-task-group-on-gbif-data-fitness-for-use-in-distribution-modelling Final Report of the Task Group on GBIF Data Fitness for Use in Distribution Modelling] | |||
* QGIS layers - use cases (e.g. elevation) | |||
* Detailed Workflows - for georeferencing, when not to georeference (see iDigBio Georeferencing Working Group - https://www.idigbio.org/wiki/index.php/IDigBio_Working_Groups#Georeferencing_Working_Group_.28GWG.29), cleaning | |||
* Documentation for tutorials | |||
* Standards/possibility for storing multiple georeferences (and other possibilities such as annotations within iDigBio) | |||
* QGIS tutorial as a Software/Data Carpentry format | |||
* QGIS working group | |||
* Geolocate with r webinar (follow on from Symbiota webinar https://www.idigbio.org/content/symbiota-webinar-geolocate-toolkit https://www.idigbio.org/content/coge-collaborative-georeferencing-demo-webinar | |||
== Trained Georeferencers == | == Trained Georeferencers == | ||