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= Post Workshop Publication =
Organizers and participants co-wrote a summation from this workshop of lessons learned and key observations and published these results as
*Seltmann K, Lafia S, Paul D, James S, Bloom D, Rios N, Ellis S, Farrell U, Utrup J, Yost M, Davis E, Emery R, Motz G, Kimmig J, Shirey V, Sandall E, Park D, Tyrrell C, Thackurdeen R, Collins M, O'Leary V, Prestridge H, Evelyn C, Nyberg B (2018) Georeferencing for Research Use (GRU): An integrated geospatial training paradigm for biocollections researchers and data providers. Research Ideas and Outcomes 4: e32449. https://doi.org/10.3897/rio.4.e32449
== iDigBio - CCBER GWG Georeferencing for Research Use, a short course  ==
{| class="wikitable" style="float:right;"
{| class="wikitable" style="float:right;"
! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Georeferencing for Research Use, a short course
! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Georeferencing for Research Use, a short course
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!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for GWG Second Train the Trainers Workshop  
!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for GWG Second Train the Trainers Workshop  
|-  
|-  
|Georeferencing for Research Use - link to agenda
|[[Georeferencing_for_Research_Use#Schedule_of_Events_-_Agenda|Georeferencing for Research Use - link to agenda]]
|-  
|-  
|Biblio entries<br>
|Biblio entries<br>
|-  
|-  
| Georeferencing for Research Use, short course report
|[https://www.idigbio.org/content/georeferencing-and-visualizing-biodiversity-data-research Georeferencing for Research Use, short course report]
|}
|}
[[Category:Workshop]]
[[Category:Workshop]][[Category:Georeferencing]][[Category:Research]]
= Wiki URLs =
[[File:Capture.PNG|200px|thumb|right|hotel and NCEAS map]]
# Agenda (this page)
# Logistics
# Useful links
# Photos
 
= iDigBio - CCBER GWG Georeferencing for Research Use, a short course  =
 
October 4 - 7, 2016 at (https://www.nceas.ucsb.edu/) NCEAS, Santa Barbara California
October 4 - 7, 2016 at (https://www.nceas.ucsb.edu/) NCEAS, Santa Barbara California


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After the workshop, we will encourage our participants to share use cases, any training materials developed, and to offer workshops, webinars, talks, or other events aimed at increasing use of best practices for georeferencing legacy locality data, best practices for capturing the locality data from future biological and paleontological collecting and sampling events, and best practices for using the data in research.
After the workshop, we will encourage our participants to share use cases, any training materials developed, and to offer workshops, webinars, talks, or other events aimed at increasing use of best practices for georeferencing legacy locality data, best practices for capturing the locality data from future biological and paleontological collecting and sampling events, and best practices for using the data in research.


Some anticipated course content includes discussion and activities about georeferencing integration, georeferenced data visualization, and georeferences for modeling and research. Detailed agenda in development.
Some anticipated course content includes discussion and activities about georeferencing integration, georeferenced data visualization, and georeferences for modeling and research.


==== Logistics: ====
=== Logistics: ===
* link to logistics page or pdf
* [[Media:HOTEL_MAP_NCEAS.pdf|Hotel and NCEAS Map]]
* NCEAS is 3rd floor of the Balboa Building,  735 State Street
* [https://www.idigbio.org/wiki/images/8/89/Local_Restaurants.pdf Local restaurant list]


==== Meet the Participants: ====
=== Course Instructor List ===
* Participant list
(''in alphabetical order'') David Bloom, Matt Collins, Una Farrell, Shelley James, Sara Lafia, Deborah Paul, Marcy Revelez, Nelson Rios, Katja Seltmann, Jessica Utrup, Mike Yost
* Map of [http://tinyurl.com/idbtttmap Participants and Instructors for TTT1 and TTT2]
=== Bring your Datasets and Laptops: ===
* Wiki for all [[TTT1TTT2| TTT1 and TTT2 Participants]]
'''Participants are strongly encouraged to bring representative datasets''' from their collections or research that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to work together to address any challenges.


==== Pre-Workshop Assignments ====
Participants must bring their own laptops and '''everyone will have wired access''' to facilitate the best possible workshop experience.
# Attend pre-workshop online meeting (date / time to be announced). One hour.
# Take a short course in R. If you are a novice, take a beginner course. We don't expect you know know R well, but we do need you be familiar enough to follow along with our hands-on sessions.
##
##
##
# Please watch the following videos - before the workshop. (flipped-classroom). ''Be sure to note any questions / insights to share with the group.''
## Collaboration to Automation: https://vimeo.com/53006304
## Geographical Concept: https://vimeo.com/53008556
## Point Radius Method and Best Practices: https://vimeo.com/53006303
## '''OPTIONAL video''': [https://plus.google.com/events/c0sjgu7mjp85vjel5rj8enq9ib0 BITC Global Online Seminar #25: Simple Workflow for Data Cleaning]
# Please '''install the following software'''
## '''QGIS'''
## '''Open Refine''': (previously Google Refine) is a tool for data cleaning that runs through a web browser, and any browser - Safari, Firefox, Chrome, Explorer - should work fine.  You will need to download Google Refine and install it, and when you open it, it will run through the browser, but you don't need an internet connection, and the data will all be stored on your computer.
### '''Windows'''
#### Go to the OpenRefine [http://openrefine.org/download.html download page].
#### Click on <i>Windows kit</i> to download the install file
#### To use it, unzip, and double-click on openrefine.exe (if you're having issues with openrefine.exe try refine.bat instead)
#### OpenRefine will then open in your web browser.
#### If it doesn't open automatically, open a web broswer after you've started the program and go to the URL <code>http://localhost:3333</code> and you should see OpenRefine.
### '''MacOS'''
#### Go to the OpenRefine [http://openrefine.org/download.html download page].
#### Click on <i>Mac kit</i> to download the install file
#### Open the downloaded .dmg file
#### Drag the icon in to the Applications folder
#### Double click on the icon and Google Refine will then open in your web browser.
#### If it doesn't open automatically, open a web broswer after you've started the program and go to the URL <code>http://localhost:3333</code> and you should see OpenRefine.
###'''Linux'''
#### Go to the OpenRefine [http://openrefine.org/download.html download page].
#### Click on <i>Linux kit</i> to download the install file
#### Download and extract
#### Type <code>./refine</code> in your terminal and Google Refine will then open in your web browser.
#### If it doesn't open automatically, open a web broswer after you've started the program and go to the URL <code>http://localhost:3333</code> and you should see OpenRefine.
## '''Spreadsheet''' software (your choice, Libre Office, Excel, etc.,)
### We'll be using a spreadsheet program. If you already have a spreadsheet program installed, like LibreOffice, Excel or OpenOffice, you can use whatever you already have. If you don't have a spreadsheet program, please download and install LibreOffice from http://www.libreoffice.org/download/libreoffice-fresh/
## '''Java''': Please make sure you have [https://java.com/en/download/ Java installed] (needed for Open Refine to work).
# OPTIONAL software install - if you are interested in the R section we will offer at the workshop.
## '''R''': R is a programming language that is especially powerful for data exploration, visualization, and statistical analysis. To interact with R, we use RStudio.
### '''Windows'''
#### [https://www.youtube.com/watch?v=q0PjTAylwoU Video Tutorial]
#### Install R by downloading and running [http://cran.r-project.org/bin/windows/base/release.htm this .exe file] from CRAN (http://cran.r-project.org/index.html).
#### Also, please [http://www.rstudio.com/ide/download/desktop install the RStudio IDE].
### '''Mac OS X'''
#### [https://www.youtube.com/watch?v=5-ly3kyxwEg Video Tutorial]
#### Install R by downloading and running [http://cran.r-project.org/bin/macosx/R-latest.pkg this .pkg file] from CRAN (http://cran.r-project.org/index.html).
#### Also, please [http://www.rstudio.com/ide/download/desktop install the RStudio IDE].
### '''Linux'''
#### You can download the binary files for your distribution from [http://cran.r-project.org/index.html CRAN]. Or you can use your package manager
##### e.g. for Debian/Ubuntu run <pre>sudo apt-get install r-base</pre> and for Fedora run <pre>sudo yum install R</pre>.
#### Also, please [http://www.rstudio.com/ide/download/desktop install the RStudio IDE].
## Then install packages:


==== Reading Materials and Resources:  ====
==== Reading Materials and Resources:  ====


#[http://georeferencing.org/ Georeferencing.Org]
#[http://georeferencing.org/ Georeferencing.org]
#[https://www.idigbio.org/sites/default/files/workshop-presentations/geotrain/GeoreferencingQuickReferenceGuide20121008.pdf Georeferencing Quick Reference Guide]<br> version 2012-10-08. John Wieczorek, David Bloom, Heather Constable, Janet Fang, Michelle Koo, Carol Spencer, Kristina Yamamoto  
#[https://www.idigbio.org/sites/default/files/workshop-presentations/geotrain/GeoreferencingQuickReferenceGuide20121008.pdf Georeferencing Quick Reference Guide]<br> version 2012-10-08. John Wieczorek, David Bloom, Heather Constable, Janet Fang, Michelle Koo, Carol Spencer, Kristina Yamamoto  
<!--#[http://manisnet.org/GeoreferencingQuickReferenceGuide.pdf Georeferencing Quick Reference Guide] version 2012-10-08. John Wieczorek, David Bloom, Heather Constable, Janet Fang, Michelle Koo, Carol Spencer, Kristina Yamamoto-->
<!--#[http://manisnet.org/GeoreferencingQuickReferenceGuide.pdf Georeferencing Quick Reference Guide] version 2012-10-08. John Wieczorek, David Bloom, Heather Constable, Janet Fang, Michelle Koo, Carol Spencer, Kristina Yamamoto-->
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#[https://www.idigbio.org/wiki/index.php/IDigBio_Listservs#Georeferencing_Working_Group Got a Georeferencing Question? Post it on the iDigBio Georeferencing List Serve]
#[https://www.idigbio.org/wiki/index.php/IDigBio_Listservs#Georeferencing_Working_Group Got a Georeferencing Question? Post it on the iDigBio Georeferencing List Serve]
#[https://plus.google.com/events/c0sjgu7mjp85vjel5rj8enq9ib0 BITC Global Online Seminar #25: Simple Workflow for Data Cleaning]
#[https://plus.google.com/events/c0sjgu7mjp85vjel5rj8enq9ib0 BITC Global Online Seminar #25: Simple Workflow for Data Cleaning]
==== Bring your Datasets and Laptops:  ====
'''Participants are strongly encouraged to bring representative datasets''' from their collections that need georeferencing to expose everyone to the variety of locality data georeferencing issues and give the experts and participants a chance to work together to address any challenges.
Participants must bring their own laptops and '''everyone will have wired access''' to facilitate the best possible workshop experience.


==== Wireless / Wired Access Issues: ====
==== Wireless / Wired Access Issues: ====
Both wired and wireless access provided to workshop participants. Connectivity instructions will be provided at the workshop.
Both wired and wireless access provided to workshop participants. Connectivity instructions will be provided at the workshop.


== Overview:  ==
== Goals of the Workshop:  ==
*Best practices for researchers for in-the-field creating of new locality data and legacy data georeferencing.
**Tools (hardware and software) and standards (what to document, datum etc.).
**How to re-patriate data and/or best practices for putting data into data repository if can’t be repatriated (what the obstacles are and minimization of data loss).
*How to evaluate already georeferenced data. Current tools for visualization and evaluation.
**Metrics to look for
**Current tools for georeferencing
**Online tools
**R
**QGIS
*Researchers give input on the challenges for georeferencing, using existing georeferences.
*Workflow review for some research review of using georeferenced data (Katja, Shelley, ...)


== Goals of the Workshop:  ==
Ultimate goal: Participant can point to aspects they have learned (tool, standard etc.) during the workshop and can indicate how they will use those aspects for their research goal/purpose (present or future).


== Workshop Objectives:  ==
== Workshop Objectives:  ==
'''Topics to be covered'''<br>
''Pre-workshop materials''<br>
*Introductory information about datums, mapping, coordinate systems<br>
*Basic georeferencing how-to<br>
''During workshop''<br>
*Data standards, DwC terminology and fields (e.g. lat, long, datum), differences among disciplines (neo- and paleontological fields)<br>
*Georeferencing toolkit and workflow examples (GEOLocate, maps, other resources, pros and cons)<br>
*Best practices for field collection of data (locality strings and GPS units, precision, datum) <br>
*How best to record and store georeferencing notes and other data sources (database/CMS dependant)<br>
*Best practices for georeferencing of legacy data given:<br>
**Varied research requirements for accuracy and precision
**Project and collection management limitations
**Uncertainty data - polygon vs. point radius, description and metadata, etc.
**Datum - georectify to a standard versus verbatim
*Workflows for incorporating data into different collections databases
**Best practice syntax in locality descriptions for use in automation vs verbatim strings
**Database limitations
**Multiple geopoint values and storage (verbatim, automated-non-vetted value, nearest named place, update to more accurate value, etc.)
*Downloading datasets - sources, different mechanisms
**Assessing data quality
**Uncertainty data - availability in data sources and interpretation
*Tools for aggregating, cleaning, visualizing and analyzing data
**R, QGIS, OpenRefine
**Creating maps
**Spatial analyses
**Automated, online tools and applications using geospatial data (e.g. LifeMapper)
*Difficult cases, such as geopolitically fluid locations over time, offshore localities<br>
*Hands-on practice & case studies<br>


== Schedule of Events - Agenda ==
Breakfast, Lunch and Dinner every day is on our own (not provided).
=== Day 1, Tuesday October 4th  ===
[https://vimeo.com/album/2163673/video/192472653 Recording Day 1]


=== Desired Outcomes:  ===
== Schedule of Events<br>  ==
Breakfast every day is on our own.
=== Day 1, Tuesday October 4th  ===
{| cellspacing="2" cellpadding="5" border="1"
{| cellspacing="2" cellpadding="5" border="1"
|-
|-
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|-
|-
| 8:45<br>
| 8:45<br>
| Pick up Name Tags, Wireless Log-In, Wired Setup<br>  
| Pick up Name Tags, Wireless Log-In, Wired Setup, [https://docs.google.com/document/d/1m9cdERGtJkukb3EHUXPmCg58G08WWMA2HyBv28k6PUo/edit# Collaborative Notes (google doc)]<br>  
| <br>  
| <br>  
|-
|-
| 9:00<br>  
| 9:00<br>  
| Welcome by NCEAS host, Logistics, Trainer Introductions, Introduction to iDigBio, CCBER<br>
| Welcome by NCEAS host, Logistics, Trainer Introductions, Introduction to iDigBio, CCBER<br>
| Katja Seltmann, Debbie Paul, (NCEAS person)<br>
| Katja Seltmann - CCBER, Debbie Paul - iDigBio, Ben Halpern - Director NCEAS, Ginger Gillquist - Logistics NCEAS <br>
|-
|-
| 9:15<br>  
| 9:20<br>  
| Why This Workshop? What tools do you use? What would you like to be able to do? (georeferencing-wise)<br>  
| From the participants and instructors: a quick informal survey
| <br>
Quick Name/Rank/Serial# introductions<br>
:tools you use<br>
:what you’d like to be able to do, tools you'd like to be able to use<br>  
|Deb Paul<br>
|-
|-
| 10:00<br>  
| 10:00<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_Workshop_Overview.pptx Workshop Overview], Introduction to Georeferencing, and Researcher Considerations<br>  
| Standards, Terms & Fields: [http://rs.tdwg.org/dwc/terms/index.htm Darwin Core Standard], Key Terminology
| Katja Seltmann, Shelley James, <br>
[https://www.idigbio.org/wiki/images/5/52/Georef_iDigBio_terms.pdf iDigBio Recommended fields]<br>  
| David Bloom, Shelley James<br>
|-
|-
| 10:20<br>  
| 10:15<br>  
| <br>
| [https://www.idigbio.org/sites/default/files/workshop-presentations/geotrain/GeoreferencingQuickReferenceGuide20121008.pdf Georeferencing Quick Reference Guide], and [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_GeoreferencingTemplate(CONCAT).xls Georeferencing Template]
| <br>
| Una Farrell
|-
|-
| 10:35<br>  
| 10:30<br>  
| Break<br>  
| Coffee Klatch w/ NCEAS<br>  
| <br>
| <br>
|-
|-
| 11:00<br>  
| 11:15<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_CollaborationToAutomation.ppt Georeferencing Introduction: Collaboration to Automation]<br>
| [https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/GeoreferencingConceptsandLocalityTypes2016.pptx Locality Types]
| <br>
| Una Farrell
|-
|-
| 11:30<br>  
| 11:45<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/geotrain/idigbio_tdt_geog_concepts.pptx Geographical Concepts]<br>
| [http://manisnet.org/gci2.html Georeferencing Calculator], [http://goo.gl/G5RM9 Calculator Manual]<br>  
| <br>
| David Bloom<br>
|-
| 11:50<br>
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_PointRadiusBestPractices.ppt Point-Radius Method and Best Practices] <br>  
| <br>
|-
|-
| 12:10<br>  
| 12:10<br>  
| [http://rs.tdwg.org/dwc/terms/index.htm Darwin Core Standard], Key Terminology<br>[https://docs.google.com/spreadsheet/ccc?key=0AtzqKK80tdzhdDg1aFJwNnVsRXNhRFNrUE1tMWxBQ1E#gid=0 iDigBio Recommended fields]
| Lunch<br>  
| <br>
|  
|-
|-
| 12:30<br>  
| 13:10<br>  
| Lunch (Provided)<br>  
|[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_GeorefCalculatorExample.ppt Georeferencing Calculator Example] and Exercises, [http://manisnet.org/GeorefGuide.html MaNIS/HerpNET/ORNIS Georeferencing Guidelines]<br>  
| <br>
| David Bloom
|-
|-
| 13:30<br>  
| 13:40<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/geotrain/GeoreferencingQuickReferenceGuide20121008.pdf Georeferencing Quick Reference Guide], [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/GeoreferencingConceptsandLocalityTypes2013.pptx Locality Types], and [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_GeoreferencingTemplate(CONCAT).xls Georeferencing Template]<br>
| [https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/InternetResources2016.pptx Internet Resources] - Where to Begin? [http://georeferencing.org georeferencing.org] <br>
|<br>
[http://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/2015_OnlineExercises11CONCAT.xls Exercises using online resources - Version 2]
| Una Farrell
|-
|-
| 14:40<br>  
| 14:40<br>  
| [http://manisnet.org/gci2.html Georeferencing Calculator], [http://goo.gl/G5RM9 Calculator Manual]<br>
|<br>
|-
| 15:30<br>
| Break<br>  
| Break<br>  
| <br>
| <br>
|-
|-
| 16:00<br>  
| 15:10<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_GeorefCalculatorExample.ppt Georeferencing Calculator Example] and Exercises, [http://manisnet.org/GeorefGuide.html MaNIS/HerpNET/ORNIS Georeferencing Guidelines]<br>  
| Exercises cont.<br>  
| <br>
| <br>
|-
| 15:30<br>
| [http://www.museum.tulane.edu/geolocate/ GEOLocate]: Overview, Basics & Demos<br>
[http://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/idigbio_ttt3_geolocate.pptx GEOLocate Introduction]<br>
[http://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/cogef2_sernec.pptx '''Co'''llaborative '''Ge'''oreferencing using CoGe] by GEOLocate
| Nelson Rios<br>
|-
|-
| 17:00<br>  
| 17:00<br>  
| Day in Review<br>Trivia Question of the Day<br>
| Day in Review<br>Trivia Question of the Day<br>Survey (15 min)
|  
|  
|-
|-
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|}
|}


<br> '''Dinner on our own''' - See list of local restaurants. '''Optional Evening Activity is''': TBA
'''Dinner on our own''' - See [https://www.idigbio.org/wiki/images/8/89/Local_Restaurants.pdf list of local restaurants]. '''Optional Evening Activity''': Happy hour and joyful GeoGathering at [http://www.hoffmannbrathaus.com/ Hoffmann Brat Haus]


=== Day 2, Wednesday October 5th  ===
=== Day 2, Wednesday October 5th  ===
[https://vimeo.com/album/2163673/video/192472654 Recording Day 2]
{| cellspacing="2" cellpadding="5" border="1"
{| cellspacing="2" cellpadding="5" border="1"
|+
|+
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! width="400" | '''Activity<br>'''  
! width="400" | '''Activity<br>'''  
! width="150" | '''Presenter<br>'''
! width="150" | '''Presenter<br>'''
|-
| 8:50<br>
|Please complete Survey for Day 1!
|
|-
|-
| 9:00<br>  
| 9:00<br>  
| Review and Questions<br>  
| Two! Trivia Questions<br>Review and Questions<br>Software Installs check for tomorrow<br>
| All<br>
| All<br>
|-
|-
| 9:10<br>  
| 9:10<br>  
| Group Photo<br>
|GEOLocate: Advanced Features, Collaborative Georeferencing and the GEOLocate API<br>  
| <br>
|Nelson Rios<br>
|-
| 9:30<br>
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/OnlineResources2013.pptx Internet Resources] - Where to Begin?<br>  
| <br>
|-
|-
| 10:00<br>  
| 10:00<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_OnlineExercises11(CONCAT).xls Exercises: Internet Resources]<br>  
| [http://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/Georeferencing%20Presentation%20INTRO%20-%20Polygons_FINAL.pptx Importance of Polygons]<br>  
| All<br>
| Mike Yost, Nelson Rios<br>
|-
|-
| 10:30<br>  
| 10:30<br>  
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|-
|-
| 11:00<br>  
| 11:00<br>  
| Exercises: Internet Resources (continued)<br>  
| GPS Units and APPs: [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/GPS_EXERCISE.docx Exercise Introduction]<br>
| David Bloom, Mike Yost, Shelley James, Katja Seltmann<br>
|-
| 11:15<br>
| GPS Exercises (continued outside)<br>  
| All<br>
| All<br>
|-
|-
| 12:15<br>  
| 12:15<br>  
| More Online Resources (resources used by/requested by participants)<br>  
| Lunch<br>  
| <br>
| <br>
|-
|-
| 12:30<br>  
| 13:15<br>  
| Lunch (Provided)<br>  
| GPS Exercises (continued outside)<br>Please [https://goo.gl/X3LkQO upload your GPS Data here]
| <br>
|All<br>
|-
|-
| 13:30<br>  
| 13:30<br>  
| GPS Exercise Introduction<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_GoodAndBadLocalities.ppt Good and Bad Localities], [http://www.idigbio.org/sites/default/files/working-groups/gwg/GoodBadLocalitiesV27Oct2015.doc Field Locality Handout]: MVZ and iDigBio GWG Guide for Recording Localities in Field Notes, <br>[http://biscicol.org/template Field Information Management Systems (FIMS)]<br> [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/HandoutPaperMaps.doc Paper maps]
|<br>
| David Bloom<br>
|-
|-
| 13:45<br>  
| 14:15<br>  
| GPS Exercises (outside)<br>  
| Georeferencing Workflows: presentations and discussion<br>
Researcher and Collections perspectives: Producers and Consumers<br>
:[http://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsRCollectionManagers.pptx Collection and Data Managers]
:[http://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsResearchers.pptx Researchers]
:[https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsRCollectionManagers_YOST.pptx Mike Yost]
:[https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsJessicaUtrup.pptx Jessica Utrup]
:[https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsResearchers_SLafia.pptx Sara Lafia]
:[https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsResearchers-seltmann.pptx Katja Seltmann]
:[https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsResearchers_SAJ.pptx Shelley James]
:[http://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/WorkflowKickOffQuestionsEBD.pptx Edward Davis]
<br>
:[https://www.idigbio.org/content/digitization-workflows Digitization Workflows at iDigBio]
:[https://www.idigbio.org/wiki/index.php/Georeferencing#Georeferencing_Community_Protocols_and_Workflows Georeferencing Protocols and Workflows - from a collections viewpoint]
| All<br>
| All<br>
|-
|-
| 15:15<br>  
| 15:15<br>  
| Break<br>  
| Break<br>  
| All<br>
|-
| 15:30<br>
| Online Exercises<br>Review of known answers<br>
|
|
|-
|-
| 16:15<br>  
| 15:45<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_PaperMaps.ppt Georeferencing Using Paper Maps], [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/HandoutPaperMaps.doc Paper Maps Handout]<br>  
| Online Exercises, Review of known answers<br>  
| <br>
| <br>
|-
| 16:30<br>
| GPS Exercise - Review (.kmz), Summary Spreadsheet, Field Worksheet, Locality Descriptions<br>
:GPSTour
:GPS Status
:Geopaparazzi
:Camera GPS
:Theodolite
| David Bloom, Jessica Utrup<br>
|-
|-
| 16:45<br>  
| 16:45<br>  
| Day in Review and Considerations for Trainers-to-be<br>
| Day in Review<br>
Your Input Needed - Mapping Functions in the iDigBio Portal<br>
Download dataset for tomorrow<br>
Trivia Question of the Day<br>
Trivia Question of the Day<br>
'''Hotelwork: create/document your project workflow(s)''' for discussion on Wednesday<br>
|  
|  
|-
| 17:15<br>
| Survey (15 min)<br>
|
|-
|-
| 17:30<br>  
| 17:30<br>  
| END<br>  
| End<br>  
| <br>
| <br>
|}
|}
'''Dinner on our own''' - See list of [http://goo.gl/maps/CN0tP local restaurants]. You'll be reimbursed at the standard per diem rates.
'''Dinner on our own''' - See [https://www.idigbio.org/wiki/images/8/89/Local_Restaurants.pdf list of local restaurants].  
'''Optional Evening Activities are:''' TBA
'''Optional Evening Activities:''' TBA


=== Day 3, Thursday October 6th  ===
=== Day 3, Thursday October 6th  ===
[http://s.idigbio.org/idigbio-downloads/a69d1541-4726-465d-84ad-50c7ed556eee.zip Download zipped dataset] The parameters for this dataset are specimens in the family Carabidae, that have geocoordinates, and are in California.  It results in about 25,000 records in total.<br/>
[https://vimeo.com/album/2163673/video/192472656 Recording Day 3]
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|-
|-
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| All<br>
| All<br>
|-
|-
| 9:15<br>  
| 9:05<br>  
| GPS Exercise - [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/GPSResults.kmz Review (.kmz)], [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/GPSResults.xlsx Summary Spreadsheet], [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/GPS_EXERCISE.docx Field Worksheet]<br>
| [https://docs.google.com/presentation/d/1ORWr2krUhwpNWteDXmNyoUaUjFkJ8PAc-mj7tNW1Rng/edit?usp=sharing​ Georeferencing for Research Use Workshop - iDigBio Datasets]
| <br>
* [https://docs.google.com/presentation/d/1ORWr2krUhwpNWteDXmNyoUaUjFkJ8PAc-mj7tNW1Rng/edit?usp=sharing​ Downloading datasets from iDigBio] - get data from portal and explain each component to the dataset.
filter and get the dataset
* What is raw vs not raw?
* Similar or different from GBIF?
* [https://github.com/iDigBio/idigbio-search-api/wiki/Data-Quality-Flags List of iDigBio Flags]:
* Walk through steps of download, but provide dataset.
* iDigBio Data set: http://s.idigbio.org/idigbio-downloads/a69d1541-4726-465d-84ad-50c7ed556eee.zip
|Matthew Collins (remote), Katja Seltmann, Shelley James<br>
|-
|-
| 9:35<br>  
| 10:00<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_ExercisesPaperMaps_SA_CR(CONCAT).xls Exercises: Using Paper Maps]<br>
| Data Quality: How to evaluate existing georeferenced data/Fitness for Use
| All<br>
* Data quality flags
* What do you need the data for (differences in use-cases)
* http://s.idigbio.org/idigbio-downloads/a69d1541-4726-465d-84ad-50c7ed556eee.zip
* Thought exercise? Evaluating data for different research project use e.g. http://www.gbif.org/event/82604
* http://journals.plos.org/plosone/article?id=10.1371%2Fjournal.pone.0063708
| Katja Seltmann, Shelley James<br>
|-
|-
| 10:30<br>  
| 10:30<br>  
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|-
|-
| 11:00<br>  
| 11:00<br>  
| Exercises: Using Paper Maps (continued)<br>  
|Cleaning Datasets: Spreadsheets, Open Refine, tracking your work<br>  
| All<br>
| Deb Paul, Nelson Rios, Katja Seltmann<br>
|-
|-
| 12:30<br>  
| 12:00<br>  
| Lunch on our own. See [http://goo.gl/maps/CN0tP local restaurant map]<br>  
| Lunch<br>  
| <br>
| <br>
|-
| 13:00<br>
| [https://www.idigbio.org/sites/default/files/workshop-presentations/georef-research-use/GRU_spreadsheetsRefine6Oct2016.pptx Cleaning Datasets: Spreadsheets, Open Refine, tracking your work] (2)<br>
| Deb Paul, Nelson Rios, Katja Seltmann<br>
|-
|-
| 13:30<br>  
| 13:30<br>  
| Exercises: Using Paper Maps (continued)<br>  
| Visualizing datasets: Set up QGIS and load data
| All<br>
* vector: points, lines, polygons
* raster: images<br>
Auxiliary [https://ucsb.box.com/s/10v6jzr6lrdmafazfvm2aukhpphr2q55 datasets]: Download any additional datasets of interest. Online [https://docs.google.com/document/d/16X0rmTqdMWzWUJIq87Pkap5IVHn3sl3bOp0jr7sev6w/edit?usp=sharing Tutorial]
| Sara Lafia<br>
|-
|-
| 14:30<br>  
| 15:00<br>  
| Online Exercises - Participant Georeferences Review<br>
| Break<br>  
Group Results and Answers available upon request
| <br>
| All<br>
|-
| 14:45<br>
| Examples and Discussion: Process, Workflows, Priorities, and Collaborations<br>
[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_EMuGeoRef.pptx EMu], [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/KUMIP_Georeferencing_Protocol_AUG2013.pdf KUMIP and Specify]<br>
[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/idigbio_ttt2_fishnet.pptx FishNet2]<br>
ORNIS [http://www.ornisnet.org/georeferencing/workflownew Workflow] and [http://www.ornisnet.org/georeferencing/repatriationguide/repatriationprocess Repatriation]<br>
[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/Paul_WorkflowsExpertorNoviceTTT2.pptx Workflows and Expert or Novice: an Experiment in Progress]<br>
*[https://www.idigbio.org/sites/default/files/workshop-presentations/geotrain/FSU_Georef-Protocol.doc FSU Georeferencing Protocol (Collaborative using GEOLocate)]<br>
*[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/Mast_Protocol.docx FSU Georeferencing Protocol (Excel and GEOLocate)]<br>
*Online Videos: [http://symbiota.org/tiki/tikimovies/georef1.htm Georeferencing and Symbiota], [https://vimeo.com/50943206 Georeferencing and Specify]<br>
*[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/ShortSurvey.xlsx Documentation Check: Short Questionnaire], [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/LongSurvey.xlsx Long Questionnaire]<br>  
| Jessica Utrup, Una Farrell, Nelson Rios, Deb Paul, Dave Bloom<br>
|-
|-
| 15:30<br>  
| 15:30<br>  
| Break<br>
| Visualizing datasets: Preview and explore toolkits & saving your maps and data<br>
| <br>
| Sara Lafia<br>
|-
|-
| 16:00<br>  
| 17:15<br>
| Process, Workflows, Priorities, and Collaborations (continued)<br>Discuss Hotelwork: Participant Project workflow(s)<br>
| Survey (15 min)
*Danielle Pace, AMNH, Arthropod Easy Capture<br>
|
*Katrina Menard, Sam Noble Museum<br>
*Mark Uhen, Paleodb.org<br>
| Jessica Utrup, Una Farrell, Nelson Rios, Deb Paul, Dave Bloom<br>
|-
| 17:00<br>
| Day in Review and Considerations,<br>
'''Volunteers for Sharing Research Experienes and Issues'''<br>
<br>
<br>
<br>
<br>
Trivia Question of the Day<br>
|  
|-
|-
|17:30<br>  
|17:30<br>  
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| <br>
| <br>
|}
|}
'''Evening Activity is''': TBD. '''Today in Santa Barbara''': <br><br>
'''Dinner''': TBD<br>


=== Day 4, Thursday August 15th ===
=== Day 4, Friday October 7th ===
[https://ucsb.box.com/s/5qqiiqw237jr5mb7ip8hm5yspl4b8hcn Download zipped QGIS project] The project to the point we completed on Day 3 is available for download in the same folder as the auxiliary data. Launch the QGIS project from the '''Tutorial.qgs''' file. <br/>
[https://vimeo.com/album/2163673/video/192472655 Recording Day 4]
 
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|-
|-
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|-
|-
| 9:00<br>  
| 9:00<br>  
| Questions and Review<br>  
| Questions and Review
| <br>
Share your datasets! [https://ucsb.box.com/s/hwddmd4cxgvxte1gn0a2lyf70k7ab6px]: Upload your research datasets that you'd like to work on.<br>  
| All <br>
|-
|-
| 9:10<br>  
| 9:10<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_PaperMapsReview.ppt Paper Maps Review]<br>  
|Exploring datasets: Aggregating by Regions
| <br>
* Join, aggregate, or summarize records by county
* Summarize observations intersecting counties
* Finding altitude
* Why do this?
<br>  
| Sara Lafia, Katja Seltmann, Nelson Rios<br>
|-
|-
| 9:40<br>  
| 9:50<br>  
| Results: Paper Maps<br>
| Exploring datasets: Time animation
Group Results and Answers available upon request
* By collecting event date or collector (to show biases in collection)
| <br>
* Check for errors with dates or transcriptions
| Sara Lafia<br>
|-
|-
| 10:30<br>  
| 10:30<br>  
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|-
|-
| 11:00<br>  
| 11:00<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/2013_GoodAndBadLocalities.ppt Good and Bad Localities], [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/GoodBadLocalities.doc Field Locality Handout], Review of GPS Locality Descriptions<br>
| Exploring datasets: Uncertainty
| <br>
* Bin points based on uncertainty rank
* Symbolize uncertainty by collector, data quality score - systematic error
| Sara Lafia<br>
|-
|-
| 11:30<br>  
| 11:30<br>  
| [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/idigbio_ttt2_geolocate.pptx Introduction to GEOLocate]<br>[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/GEOLocate_What_to_Do.ppt What To Do]<br>
| Exploring datasets: Spatial autocorrelation
| <br><br>
* Distribution/clustering prevalence based on species, collector, etc.
* Date-collector correlation
| Sara Lafia<br>
|-
|-
| 12:15<br>  
| 12:00<br>  
| Lunch on our own. See [http://goo.gl/maps/CN0tP local restaurant map]<br>
| Lunch on our own.
| <br>
| <br>
|-
| 13:00<br>
| LifeMapper LIVE DEMO<br>
| Jeffrey Cavner, James Beach, et al<br>
|-
|-
| 13:15<br>  
| 13:15<br>  
| Using GEOLocate: Basics (Web Application)<br>  
| Work on own data sets/Open question time/Practice. Polygon practice<br>  
| Nelson Rios<br>
| Nelson Rios, et al<br>
|-
|-
| 13:45<br>  
| 13:45<br>  
| Using GEOLocate: Batch Processing (Web App and Excel)<br>  
| ''Breakout sessions''<br>
| Nelson Rios<br>
Cleaning data using r <br>
|-
Accessing APIs using r <br>
| 14:25<br>  
More with QGIS<br>
| Using GEOLocate: Collaborative Georeferencing Administrative Portal<br>  
GEOLocate in Symbiota<br>
| Nelson Rios<br>
Advanced GEOLocate<br>
GPS Apps<br>
Georectification<br>
Try GeoODK [http://geoodk.com/ http://geoodk.com/]
| <br>
|-
|-
| 15:30<br>  
| 15:30<br>  
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|-
|-
| 16:00<br>  
| 16:00<br>  
| Using GEOLocate: Collaborative Georeferencing Web Client<br>  
| Research Use of the Data. A conversation from the collective point-of-view of the researchers present.<br> Challenges? Experiences? Needs (software, skills, infrastructure)? What changes might you make now to your workflows?<br>  
| Nelson Rios<br>
| Ed Davis, Katja Seltmann, Shelley James, Nelson Rios, Sara Lafia<br>
|-
|-
| 16:20<br>  
| 16:30<br>  
| [https://www.idigbio.org/content/advanced-geolocate-course-services-integration-end-end-workflows Advanced GEOLocate]: Taxon validation, Web services &amp; integration, Building end-to-end georeferencing workflows<br>Note this topic was covered in a [http://idigbio.adobeconnect.com/p47ekqz7lum/ remote recorded session] after TTT2.
| Day & workshop in Review<br>[https://www.idigbio.org/content/webinar-isn%E2%80%99t-spatial-discover-how-geo-enable-your-research-and-teaching-today%E2%80%99s-interactive iDigBio Webinar On Your Calendar Oct 12th, 2016 - Isn't that Spatial?]<br>Post Workshop Survey
| Nelson Rios<br>
| <br>
|-
|-
| 17:00<br>
| Day in Review and Considerations for Trainers-to-be<br>
Trivia Question of the Day<br>
| <br><br>
|-
|-
| 17:30<br>  
| 17:30<br>  
| End<br>  
| Beer<br>  
| <br>
| <br>
|-
|-
|}
|}
'''Dinner on our own''' - See list of [http://goo.gl/maps/CN0tP local restaurants]. You'll be reimbursed at the standard per diem rates.
'''Dinner on our own''' - See [https://www.idigbio.org/wiki/images/8/89/Local_Restaurants.pdf list of local restaurants].  
<br>
<br>


=== Day 5, Friday August 16th  ===


{| cellspacing="2" cellpadding="5" border="1"
<br/>
|-
Some software [http://www.datacarpentry.org/workshop-template/install.html install instructions] from Data and Software Carpentry
! width="49" | '''Time<br>'''
 
! width="400" | '''Activity<br>'''
== Requests for the Future ==
! width="150" | '''Presenter<br>'''
* Scripts/tools for repeated cleaning/analysis
|-
* Using the iDigBio API (API for dummies)
| 9:00<br>
* Inselect (note we provided links for more on this tool - to the workshop participants, see [https://docs.google.com/document/d/1m9cdERGtJkukb3EHUXPmCg58G08WWMA2HyBv28k6PUo/edit?usp=sharing google doc])
| Review and Questions<br>
* Automated data cleaning - iDigBio and VertNet activities
| David Bloom<br>
* What to do with quantified uncertainties & polygons - Jorge Soberon (KU team, others in the fitness for use GBIF working group - see [https://www.gbif.org/document/82612/report-of-the-task-group-on-gbif-data-fitness-for-use-in-distribution-modelling Final Report of the Task Group on GBIF Data Fitness for Use in Distribution Modelling]
|-
* QGIS layers - use cases (e.g. elevation)
| 9:10<br>
* Detailed Workflows - for georeferencing, when not to georeference (see  iDigBio Georeferencing Working Group - https://www.idigbio.org/wiki/index.php/IDigBio_Working_Groups#Georeferencing_Working_Group_.28GWG.29), cleaning
| Data Cleaning, Processing, and Analysis<br>
* Documentation for tutorials
[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/OpenRefineTTT22013.pptx Cleaning, Validating, and Enhancing Data with Open Refine]<br>[https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/OpenRefineTTT2Demo.csv sample CSV] and [https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/openrefinettt2demoscripts.txt sample script] to use with this presentation
* Standards/possibility for storing multiple georeferences (and other possibilities such as annotations within iDigBio)
<br>([http://www.gpsvisualizer.com/ GPS Vizualizer], [http://code.google.com/p/google-refine/ Google Refine] which is now [https://github.com/OpenRefine Open Refine], [https://gist.github.com/3880547 Example of a Refine Call to GEOLocate], [http://www.r-project.org/ r-project], [http://rstudio.org/download/desktop RStudio], [http://www.qgis.org/ QuantumGIS], [https://www.idigbio.org/sites/default/files/workshop-presentations/geotrain/QGIS1.8BasicOperations-vectors.doc QGIS Basic Operations)]<br>
* QGIS tutorial as a Software/Data Carpentry format
| Debbie Paul, Nelson Rios, Dave Bloom<br>
* QGIS working group
|-
* Geolocate with r webinar (follow on from Symbiota  webinar https://www.idigbio.org/content/symbiota-webinar-geolocate-toolkit https://www.idigbio.org/content/coge-collaborative-georeferencing-demo-webinar
 
 
== Trained Georeferencers ==
* Map of [http://tinyurl.com/idbtttmap Participants and Instructors for TTT1 and TTT2]
* Wiki for all [[TTT1TTT2| TTT1 and TTT2 Participants]]


| 10:30<br>
== Pre-Workshop Assignments ==
| Break<br>
# Attend pre-workshop online meeting. Two options, choose one.
| <br>
## Thursday September 15th - two times to choose from:
|-
### 11am EDT (10am CDT, 9am MDT, 8am PDT)
| 11:00<br>
### 3pm EDT (2pm CDT, 1pm MDT, 12pm PDT)
| Open Work Session - Participant/TCN Georeferencing Projects (use those data sets)<br>
## Sign Up Here: https://goo.gl/forms/WmJO6z79rx5nHlv32
| All<br>
## Meet: http://idigbio.adobeconnect.com/geotrain
|-
# '''Please watch the following videos''' - before the workshop. (flipped-classroom). ''Be sure to note any questions / insights to share with the group.''
| 12:00<br>
## Collaboration to Automation: https://vimeo.com/53006304 (25 min lecture, 10 min discussion)
| Open Work Session (continued)<br>
## Geographical Concepts: https://vimeo.com/53008556 (4 min lecture, 2 min discussion)
| All<br>
### https://vimeo.com/album/2163673/video/63692461 (4 min lecture only)
|-
## Point Radius Method and Best Practices: https://vimeo.com/53006303 (20 min lecture, 5 min discussion)
| 12:30<br>
## '''OPTIONAL video''': [https://plus.google.com/events/c0sjgu7mjp85vjel5rj8enq9ib0 BITC Global Online Seminar #25: Simple Workflow for Data Cleaning] (1 hour)
| Lunch on our own. See [http://goo.gl/maps/CN0tP local restaurant map]<br>
# Please '''install the following software'''
| <br>
## '''QGIS''' and then [http://plugins.qgis.org/plugins/ QGIS Plugins]. '''NOTE it's easy to install all the plugins from inside QGIS once you have it installed.''' [[File:QGISPlugins2.png|300px|thumb|right|QGIS plugins menu - Manage and Install]][[File:plugins.png|300px|thumb|right|QGIS plugins menu]]
|-
### '''QGIS''': http://qgis.org/en/site/forusers/download.html
| 13:30<br>
### ''' QGIS Plug-ins''': Open your QGIS installation on your laptop > navigate to Plugins > Manage and Install Plugins (as seen in the screenshots). You can then add these plugins within QGIS by typing the tool name into the search box and clicking on "Install Plugin": Clipper, Coordinate Capture, GPS Tools, Heatmap, Interpolation, OpenLayers, Processing, TimeManager, and Lifemapper.
| Open Work Session (continued)<br>  
#### [https://plugins.qgis.org/plugins/clipper/ Clipper] (clip intersecting vector features)
| All<br>
#### [https://docs.qgis.org/2.2/en/docs/user_manual/plugins/plugins_coordinate_capture.html?highlight=coordinate Coordinate Capture] (find coordinates in various coordinate reference systems (CRS) via mouse-over)
|-
#### [https://github.com/mixedbredie/qgis-gazetteer-search?highlight=gazetteer Gazetteer Search] (finding named places via a search bar): NOTE: The Gazetteer Plugin is not "discoverable" through the Plugins manager in QGIS. You'll need to follow the installation steps listed here: https://github.com/AstunTechnology/QGIS-Gazetteer-Plugin#Installation
| 14:15<br>  
##### Manual
| Batch Georeferencing in Symbiota<br>  
###### find where your QGIS is installed on your machine
| <br>
###### right click the folder to see contents and find the folder for Plugins
|-
####### for example, on Deb's Windows 10 laptop, the path to the correct QGIS plugins folder is C:\Users\dlpss\.qgis2\python\plugins
| 14:30<br>  
###### make a folder called gazetteersearch inside of the QGIS Plugins directory
| Researcher Demos - <br>
###### download the contents from GitHub and move them into the gazetteersearch folder
*Edward Davis <br>
###### close and reopen QGIS in order for the plugin to show up
*Shelley James<br>
##### via Git
*Katja Seltmann<br>
###### clone the repository into your QGIS Plugins folder following the steps from the link above. Please let Sara know if you have any other questions.
*<br>  
#### [http://docs.qgis.org/2.0/en/docs/user_manual/working_with_gps/plugins_gps.html?highlight=GPS GPS Tools] (loading and importing GPS data)
| <br>
#### [http://documentation.qgis.org/2.0/en/docs/user_manual/plugins/plugins_heatmap.html?highlight=heatmap Heatmap] (generate a heatmap raster given input vector points)
|-
#### [http://documentation.qgis.org/2.0/en/docs/user_manual/plugins/plugins_interpolation.html?highlight=interpolation Interpolation] (interpolation techniques given vertices of a vector layer)
| 15:30<br>
#### [http://documentation.qgis.org/2.0/en/docs/training_manual/qgis_plugins/plugin_examples.html?highlight=openlayers OpenLayers] (load basemaps from OpenStreetMap, Google, etc.)
| Break<br>
#### Processing (spatial data processing framework)
| <br>
#### [https://plugins.qgis.org/plugins/timemanager/?highlight=time TimeManager] (event-visualization animation for vector features)
|-
#### [http://plugins.qgis.org/plugins/lifemapperTools/ Lifemapper]: Plugin for Lifemapper webservices for SDM modeling, and multispecies Presence Absence Matrix (PAM) analysis. The tool allows you to build SDM models using GBIF, iDigBio, or user supplied species occurrence data.
| 16:00<br>
### ''' [https://github.com/AstunTechnology/QGIS-Gazetteer-Plugin Gazetteer Search] requires an additional step; follow these steps to install (manual):  
| [https://ufl.qualtrics.com/SE/?SID=SV_eD1wtiXhHUS0zB3 Post-Workshop Survey]<br>
#### find where your QGIS is installed on your machine
| All<br>
#### right click the folder to see contents and find the folder for Plugins
|-
#### make a folder called gazetteersearch inside of the QGIS Plugins directory
| 16:30<br>
#### download the contents from GitHub and move them into the gazetteersearch folder
| Day in Review and Considerations<br>
#### close and reopen QGIS in order for the plugin to show up
Your Input Needed - Mapping Functions in the iDigBio Portal - Part 2<br>
#### OR install via command line (using Git - see instructions in link above)
Trivia Question of the Day<br>  
#### clone the repository into your QGIS Plugins folder following the steps from the link above.
|
## '''Open Refine''': (previously Google Refine) is a tool for data cleaning that runs through a web browser, and any browser - Safari, Firefox, Chrome, - should work fine (Explorer not recommended).  You will need to download Google Refine and install it, and when you open it, it will run through the browser, but you don't need an internet connection, and the data will all be stored on your computer. (Use these resources [https://swissbib.github.io/2016-06-23-basel/ Open Refine Install] or [https://github.com/OpenRefine/OpenRefine/wiki/Installation-Instructions Install Open Refine] for more help if you run into any Open Refine install issues).
|-
### '''Windows'''
| 17:00<br>  
#### Go to the OpenRefine [http://openrefine.org/download.html download page].
| Workshop Summary and Certificates<br>  
#### Click on <i>Windows kit</i> to download the install file
| All Instructors<br>
#### To use it, unzip, and double-click on openrefine.exe (if you're having issues with openrefine.exe try refine.bat instead)
|-
#### OpenRefine will then open in your web browser.
| 17:30<br>
#### If it doesn't open automatically, open a web broswer after you've started the program and go to the URL <code>http://localhost:3333</code> and you should see OpenRefine.
| End<br>
### '''MacOS'''
| <br>
#### Go to the OpenRefine [http://openrefine.org/download.html download page].
|}
#### Click on <i>Mac kit</i> to download the install file
'''Dinner on our own''' - See list of local restaurants. Leaving tomorrow? Want to get together for dinner or hang out at the hotel pool?
#### Open the downloaded .dmg file
#### Drag the icon in to the Applications folder
#### Double click on the icon and Google Refine will then open in your web browser.
#### If it doesn't open automatically, open a web broswer after you've started the program and go to the URL <code>http://localhost:3333</code> and you should see OpenRefine.
###'''Linux'''
#### Go to the OpenRefine [http://openrefine.org/download.html download page].
#### Click on <i>Linux kit</i> to download the install file
#### Download and extract
#### Type <code>./refine</code> in your terminal and Google Refine will then open in your web browser.
#### If it doesn't open automatically, open a web broswer after you've started the program and go to the URL <code>http://localhost:3333</code> and you should see OpenRefine.
## '''Spreadsheet''' software (your choice, Libre Office, Excel, etc.,)
### We'll be using a spreadsheet program. If you already have a spreadsheet program installed, like LibreOffice, Excel or OpenOffice, you can use whatever you already have. If you don't have a spreadsheet program, please download and install LibreOffice from http://www.libreoffice.org/download/libreoffice-fresh/
## '''Java''': Please make sure you have [https://java.com/en/download/ Java installed] (needed for Open Refine to work).
# OPTIONAL software install and tutorials - if you are interested in the R breakout section we will offer at the workshop.
## '''R & RStudio''': R is a programming language that is especially powerful for data exploration, visualization, and statistical analysis. To interact with R, we use RStudio.
### '''Windows'''
#### [https://www.youtube.com/watch?v=q0PjTAylwoU Video Tutorial]
#### Install R by downloading and running [http://cran.r-project.org/bin/windows/base/release.htm this .exe file] from CRAN (http://cran.r-project.org/index.html).
#### Also, please [http://www.rstudio.com/ide/download/desktop install the RStudio IDE].
### '''Mac OS X'''
#### [https://www.youtube.com/watch?v=5-ly3kyxwEg Video Tutorial]
#### Install R by downloading and running [http://cran.r-project.org/bin/macosx/R-latest.pkg this .pkg file] from CRAN (http://cran.r-project.org/index.html).
#### Also, please [http://www.rstudio.com/ide/download/desktop install the RStudio IDE].
### '''Linux'''
#### You can download the binary files for your distribution from [http://cran.r-project.org/index.html CRAN]. Or you can use your package manager
##### e.g. for Debian/Ubuntu run <code>sudo apt-get install r-base</code> and for Fedora run <code>sudo yum install R</code>.
#### Also, please [http://www.rstudio.com/ide/download/desktop install the RStudio IDE].
## Then install packages:
## R Tutorials. OPTIONAL take a short course in R. If you are a novice, take a beginner course. We don't expect you know know R well, but we do need you be familiar enough to follow along with one of our optional hands-on sessions. There are several good options:
###[http://tryr.codeschool.com/ Try R] (Code School course)
### Beginner Course: [http://www.lynda.com/R-training-tutorials/1570-0.html?category=beginner_337 Up and Running with R with Barton Poulson] (course at lynda.com)
### Intermediate Course: [http://www.lynda.com/R-training-tutorials/1570-0.html?category=intermediate_33 R Statistics Essential Training with Barton Poulson](course at lynda.com)
### For the future you could take a Coursera class. [https://www.coursera.org/course/rprog intro to R](Coursera course started August 22nd).
## Georeferencing using Apps: please install either of these on your device, if you want to try georeferencing this way to compare with results from a GPS unit.
### '''GPS Status''': available for [https://play.google.com/store/apps/details?id=com.eclipsim.gpsstatus2&hl=en android] and [https://itunes.apple.com/us/app/gps-status/id378085995?mt=8 iOS] devices.
### '''Geopaparazzi''': [https://play.google.com/store/apps/details?id=eu.hydrologis.geopaparazzi&hl=en android] only


'''Optional Friday night activities:'''
== Updates  ==
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