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SPNHC 2017 Biodiversity Informatics 101: Difference between revisions
SPNHC 2017 Biodiversity Informatics 101 (view source)
Revision as of 13:47, 22 May 2018
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|Biodiversity Informatics 101 Biblio Entries | |Biodiversity Informatics 101 Biblio Entries | ||
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| | |[https://www.idigbio.org/content/spnhc-2017-theme-next-generation-best-practices-perfect-fit-idigbio SPNHC 2017 iDigBio Events Blog Post] | ||
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This wiki supports the '''SPNHC 2017 Biodiversity Informatics 101 Short Course''', Denver, Colorado, 18 June, 2017. | This wiki supports the '''SPNHC 2017 Biodiversity Informatics 101 Short Course''', Denver, Colorado, 18 June, 2017. | ||
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**Theme 1: Data, Standards, and Resources. What is Natural History Biodiversity Informatics? Topics covered will include introductions to data standards, data sharing standards, specimen and collection object imaging, data mobilization, data and media management, data cleanup tools and methods, and best practices for these subjects. | **Theme 1: Data, Standards, and Resources. What is Natural History Biodiversity Informatics? Topics covered will include introductions to data standards, data sharing standards, specimen and collection object imaging, data mobilization, data and media management, data cleanup tools and methods, and best practices for these subjects. | ||
** Theme 2: Who's who in Natural History Biodiversity Informatics? We will provide overviews for many of the projects, initiatives, and organizations currently involved in mobilizing collections data, see many examples here. Find out how you and your collections benefit from these initiatives. Learn how you can contribute your expertise and experience to them. | ** Theme 2: Who's who in Natural History Biodiversity Informatics? We will provide overviews for many of the projects, initiatives, and organizations currently involved in mobilizing collections data, see many examples here. Find out how you and your collections benefit from these initiatives. Learn how you can contribute your expertise and experience to them. | ||
**Theme 3: Getting Involved | **Theme 3: Getting Involved. Resources for learning more about and participating in Natural History Biodiversity Informatics. For example, find out how you might increase your biodiversity informatics skills and data literacy through a Data or Software Carpentry workshop. Investigate existing iDigBio and other community working groups. Get a SPNHC Demo Camp Preview. Learn how all this content helps you work with your collections’ informatics specialists. And, please come to help shape the 2018 SPNHC + TDWG joint meeting opportunities. | ||
=== [https://docs.google.com/forms/d/e/1FAIpQLScI--K3aD8JSAsBvJR3ZDAdidPZpXlE0l4eWAv3_A6K_ig4Ig/viewform Participant Questionnaire] === | === [https://docs.google.com/forms/d/e/1FAIpQLScI--K3aD8JSAsBvJR3ZDAdidPZpXlE0l4eWAv3_A6K_ig4Ig/viewform Participant Questionnaire] === | ||
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*[https://docs.google.com/spreadsheets/d/1PBSRsoEUo8IuAwQnkp8GXJN50dbCJ_aeYajZy9bv-FM/edit?usp=sharing Post-Its and Minute Cards - morning] | *[https://docs.google.com/spreadsheets/d/1PBSRsoEUo8IuAwQnkp8GXJN50dbCJ_aeYajZy9bv-FM/edit?usp=sharing Post-Its and Minute Cards - morning] | ||
*Participant List | *Participant List | ||
*Blog post | *[https://www.idigbio.org/content/spnhc-2017-theme-next-generation-best-practices-perfect-fit-idigbio Blog post] | ||
*[http://openrefine.org/ Open Refine] - data cleaning application | *[http://openrefine.org/ Open Refine] - data cleaning application | ||
*[http://wiki.datakurator.org/wiki/ Kurator] - toolkit of assorted workflows for cleaning data | *[http://wiki.datakurator.org/wiki/ Kurator] - toolkit of assorted workflows for cleaning data | ||
*[https://github.com/DenverBotanicGardens/protoColl/ Denver Botanic Gardens Protocols] -repository of protocols | |||
==Short Course Outline== | ==Short Course Outline== | ||
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| 0 ||7:45 - 8:00||Sign-in, Name tags, Wifi for SPNHC 2017 Biodiversity Informatics 101|| | | 0 ||7:45 - 8:00||Sign-in, Name tags, Wifi for SPNHC 2017 Biodiversity Informatics 101|| | ||
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| 1 ||8:00 - 8:15||Course Introduction: SPNHC 2017 Biodiversity Informatics 101<br/>Themes 1,2,3||Holly Little, Deborah Paul, Jennifer Strotman | | 1 ||8:00 - 8:15||Course Introduction: SPNHC 2017 Biodiversity Informatics 101 [https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/01_Paul_Debbie_2017-06-18_INTRO_SPNHCbiodiv101dp.pptx Slides]<br/>Themes 1,2,3||Holly Little, Deborah Paul, Jennifer Strotman | ||
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! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 1: Collections Data, Standards, and Resources. What is Natural History Biodiversity Informatics? | ! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 1: Collections Data, Standards, and Resources. What is Natural History Biodiversity Informatics? | ||
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| 14 || 1:00 - 1:15 ||Joining Paleontological and Neontological biodiversity data<br/>PBDB, ePANDDA - Making Connections - No Silos<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/ePANDDA_BerkeleyWrkshp_Gil.pptx Slides]||Gil Nelson, Talia Karim | | 14 || 1:00 - 1:15 ||Joining Paleontological and Neontological biodiversity data<br/>PBDB, ePANDDA - Making Connections - No Silos<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/ePANDDA_BerkeleyWrkshp_Gil.pptx Slides]||Gil Nelson, Talia Karim | ||
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| 15 || 1:15 - 1:25 ||Alphabet Soup & Advocacy<br/>[https://www.idigbio. | | 15 || 1:15 - 1:25 ||Alphabet Soup & Advocacy<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/14_Paul_and_James_AlphabetSoup_SPNHC2017_BI101.pptx Slides]||Deborah Paul, Shelley James | ||
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| 16 || 1:25 - 1:40 ||Focus on Entomological biodiversity data and collections<br/>ECN, EntSoc, InvertNet, ECN liaison with SPNHC<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/16_Young%20%26%20Brabant%20iDigBio%20Denver%202017.pptx Slides]||Dan Young, Craig Brabant | | 16 || 1:25 - 1:40 ||Focus on Entomological biodiversity data and collections<br/>ECN, EntSoc, InvertNet, ECN liaison with SPNHC<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/16_Young%20%26%20Brabant%20iDigBio%20Denver%202017.pptx Slides]||Dan Young, Craig Brabant | ||
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| 18 || 1:55 - 2:05 ||What's up down-under?<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/18-What_up_downunder_SAJ%2BNF.pptx Slides]||Shelley James, Nicole Fisher | | 18 || 1:55 - 2:05 ||What's up down-under?<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/18-What_up_downunder_SAJ%2BNF.pptx Slides]||Shelley James, Nicole Fisher | ||
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| 19 || 2:05 - 2:15 ||Expanding NHC Stakeholders: CCBER - Ecology and Collections Together<br/>[https://www.idigbio. | | 19 || 2:05 - 2:15 ||Expanding NHC Stakeholders: CCBER - Ecology and Collections Together<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/19_SPNHC%20Wahlert%202017.ppt Slides]|| Gregory Wahlert | ||
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| 20 || 2:10 - 2:20 ||2-minute Stand Ups<br/>Jonathan Kennedy<br/>Megan Ryan King<br/>Matthew Yoder<br/> | | 20 || 2:10 - 2:20 ||2-minute Stand Ups<br/>Jonathan Kennedy<br/>Megan Ryan King<br/>Laurence Livermore<br/>Matthew Yoder<br/> | ||
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| 21 || 2:20 - 2:30 ||Open TBD | | 21 || 2:20 - 2:30 ||Open TBD | ||
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! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 3: Getting Involved: resources for learning more about and participating in Natural History Biodiversity Informatics | ! scope="row" colspan="4" style="text-align:left; background-color: #CEF2CE;"| Theme 3: Getting Involved: resources for learning more about and participating in Natural History Biodiversity Informatics | ||
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| 23 || 3:30 - 3:40 || Biodiversity Data Skills and Literacy: What, Where, and How?<br/>[https://www.idigbio.org/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/23_2017-06-17_SPNHCbiodiv101_biodivSkillsTalk.pptx Slides]|| Deborah Paul | | 23 || 3:30 - 3:40 || Biodiversity Data Skills and Literacy: What, Where, and How?<br/>[https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2017/nhcBiodiversityInformatics101/23_2017-06-17_SPNHCbiodiv101_biodivSkillsTalk.pptx Slides]|| Deborah Paul | ||
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| 24 || 3:40 - 3:50 || Making DwC Stick: Introducing the Darwin Core Hour Webinar Series and Git Hub<br/>[https://drive.google.com/open?id=1Bj23MC6FY36uVORBWXY_rHUhK6uX_i2-li21P8fIxjw Google Slides]||Gary Motz on behalf of the Darwin Core Hour Team | | 24 || 3:40 - 3:50 || Making DwC Stick: Introducing the Darwin Core Hour Webinar Series and Git Hub<br/>[https://drive.google.com/open?id=1Bj23MC6FY36uVORBWXY_rHUhK6uX_i2-li21P8fIxjw Google Slides]||Gary Motz on behalf of the Darwin Core Hour Team | ||