Databasing References: Difference between revisions

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== Collection Data Registration at the Nationaal Herbarium Nederland: Data Guidelines, by L. P. M. Willemse, J. B. Mols. ==

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! scope="col" align="left" valign="top"| http://rs.tdwg.org/dwc/terms/index.htm#

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! scope="col" align="left" valign="top"| This quick guide provides a list of all current terms of the Darwin core. The terms are organized by categories (in bold) in the index. The categories correspond to Darwin Core terms that are classes (terms that have other terms to describe them). The terms that describe a given class (the class properties) appear in the list immediately below the name of the category in the index. The index provides links to the term descriptions in the table below the index.

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! scope="col" align="left" valign="top"| http://ecnweb.org/sites/default/files/21a_Yanega_2010.pdf#

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! scope="col" align="left" valign="top"| Collaborative specimen databasing of bees at ten collections: AMNH, UC Riverside, UC Davis, UC Berkeley, CSCA, Cornell, Uconn, Rutgers, Vermont, USDA Bee Systematics Lab. Includes a brief but important imaging protocol.

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! scope="col" align="left" valign="top"| http://imsgbif.gbif.org/CMS_ORC/?doc_id=2429&download=1#

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! scope="col" align="left" valign="top"| This book addresses a number of important issues about the digital imaging of biological objects. These topics were explored in two workshops organised by the European Network for Biodiversity Information (ENBI), and the Global Biodiversity Information Facility (GBIF). With the digital imaging of a growing number of biological objects, it has become of great importance to agree on common approaches and standards. Such standardization is particularly important for natural history specimens so as to compare specimens often with only subtle differences in morphology. Emerging technologies are leading to exciting new opportunities in scientific studies and the field of biodiversity is notable among them. This publication includes serveral chapters on important issues, including color management, image file management, metadata standards and practices, and several approaches to varying organismal groups.

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! scope="col" align="left" valign="top"| 2001-2005

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! scope="col" align="left" valign="top"| http://swehsc.pharmacy.arizona.edu/exppath/resources/pdf/Digital_Imaging_Ethics.pdf#

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! scope="col" align="left" valign="top"| Scientists are usually considered to be respected sources of information and there is the understanding within the scientific community that data must not be inappropriately manipulated or falsified. When this essay was first composed in 2001, there were very few written guidelines for scientists. Now some of the major professional societies have issued policy statements regarding digital imaging, and many scientific journals have revamped their instructions to authors to provide clearer guidance of how they require images to be handled. Publications like the Journal of Cell Biology have begun testing images in accepted articles to ensure compliance with their guidelines and the Office of Research Integrity (HHS) has been watching this issue closely. In this author’s experience the inappropriate manipulation of scientific digital images typically does not arise from an intent to deceive or to obscure information. More often the inappropriate manipulations are simply due to ignorance of basic principles. It seemed to this author that often what is needed is an explanation of why manipulations are right or wrong. These twelve guidelines are an attempt to address this issue. It should be noted that the author has extensive experience in the microscopic imaging of biological specimens and these guidelines reflect his personal experience in this field.

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! scope="col" align="left" valign="top"| 2010

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! scope="col" align="left" valign="top"| http://ecnweb.org/sites/default/files/gall-ecn-posted.pdf#

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== Exchangeable image file format for digital still cameras : Exif Version 2.2 (2002). ==

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== From Ink to Electrons: Issues to be Considered, by Larry Speers, Agriculture and Agri-Food Canada. ==

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== GBIF Training Manual 1: Digitization of Natural History Collections Data. ==

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== How to Digitize Large Insect Collections? Preliminary Results of the Dig Project, by D. Lampe, K-H. Striebing. ==

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== Image Capture and Processing: An Overview, Consortium of Pacific Northwest Herbaria, by Ben Legler. ==

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== Imaging of Specimens: Issues to be Considered, by Larry Speers, Agriculture and Agri-Food Canada. ==

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== Initiating a Collection Digitisation Project, by C. K. Frazier, J. Wall, S. Grant. ==

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== Innovative workflows for efficient data capture in an entomological collection: The MCZ Lepidoptera Rapid Data Capture Project, by P. Morris, R. Eastwood, L. Ford, et. al. ==

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== Moving Theory into Practice: Digital Imaging Tutorial. ==

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== Natural History Specimen Digitization : Challenges and Concerns, by A. Vollmar, J. A. Macklin, L. S. Ford., Biodiversity Informatics, 7, pp. 93-112. ==

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== New York Botanical Garden Virtual Herbarium Best Practices Guide. ==

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== Not another frickin' database!, by Michael Wall. ==

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== Principals of Data Quality, A. Chapman. ==

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== Reference Model for an Open Archival Information System (OAIS), by the Space Data Systems, Consultative Committee. ==

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== Relational database design and implementation for biodiversity informatics, by P. J. Morris, PhyloInformatics 7: 1-66 - 2005. ==

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== Report on trial of SatScan tray scanner system by SmartDrive Ltd., by V. Blagoderov, I. Kitching, T. Simonsen, V. Smith; Natural History Museum, London. ==

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== Scientific Collections: Mission-Critical Infrastructure for Federal Science Agencies, A Report of the Interagency Working Group on Scientific Collections. ==

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== Semi-automated workflows for acquiring specimen data from label images in herbarium collections, Taxon, Volume 59, Number 6, pp. 1830-1842.==

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== Specimen Imaging Documentation: Consortium of Pacific Northwest Herbaria, Version 4.0. ==

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== The AIC Guide to Digital Photography and Conservation Documentation ==

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== The use of specimen label images for efficient data acquisition in research collections cataloguing: Workflow, Ingio Granzow-de la Cerda, Juan Carols Gomez-Martinez, Jose Luis Garcia-Castillo.  ==

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