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Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease: Difference between revisions
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Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease (view source)
Revision as of 17:16, 19 January 2023
, 19 January 2023→Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease
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'''[https://www.globalbioticinteractions.org/how-to GloBI How-To]'''<br> | '''[https://www.globalbioticinteractions.org/how-to GloBI How-To]'''<br> | ||
An instructional information page to assist in navigating and using data in [www.globalbioticinteractions.org GloBI] | An instructional information page to assist in navigating and using data in [https://www.globalbioticinteractions.org GloBI] | ||
'''[https://bit.ly/ECMworkshop Interaction Data Interpretation Workshop]'''<br> | '''[https://bit.ly/ECMworkshop Interaction Data Interpretation Workshop]'''<br> | ||
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=== Protocols & Workflows === | === Protocols & Workflows === | ||
TPT has contributed many exemplar workflows to the [https://entcollnet.github.io/BugFlow/ BugFlow repository] as well as helped build many of the baseline workflow protocols: | TPT has contributed many exemplar workflows to the '''[https://entcollnet.github.io/BugFlow/ BugFlow repository]''' as well as helped build many of the baseline workflow protocols on BugFlow. Specific exemplar workflows contributed include: | ||
* [https://github.com/EntCollNet/BugFlow/tree/master/workflows Workflows folder] (master/all workflows) | * [https://github.com/EntCollNet/BugFlow/tree/master/workflows Workflows folder] (master/all workflows) | ||
* [https://github.com/EntCollNet/BugFlow/blob/master/modules/module_1/module_1A.md Module 1A: Inventory and Taxonomy Update] | * [https://github.com/EntCollNet/BugFlow/blob/master/modules/module_1/module_1A.md Module 1A: Inventory and Taxonomy Update] | ||
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=== Publications === | === Publications === | ||
''' | '''2022''' | ||
* | * Poelen, Jorrit (2022). On Interpreting Biotic Association Records. Zenodo. https://doi.org/10.5281/zenodo.6686306 | ||
* Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., Light, Jessica E., Tucker, Erika M., Demboski, John R, McElrath, Tommy, Grinter, Christopher C, Diaz-Bastin, Rachel, Bush, Sarah E, Delapena, Robin, Cook, Joseph, Gall, Lawrence F., Whiting, Michael F, Clark, Shawn M, Cameron, Stephen L, Replogle, Charla R, Rund, Samuel S.C., Young, Daniel, Brabant, Craig, Sullivan, Kathryn, Turcatel, Maureen, Shuman Baquiran, Rebekah, Albion, Zoe, Austin, Kyhl, Rubinoff, Dan, Cognato, Anthony I., Caywood, Alyssa, Colby, Julia, Allen, Julie, Zaspel, Jennifer M. (2022). Terrestrial Parasite Tracker indexed biotic interactions and review summary (0.6) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.6761707 | |||
* | *Tucker, Erika, Poelen, Jorrit, & Seltmann, Katja (2022). A lesson plan for better understanding entomological specimen interaction data in collections by NSF funded Terrestrial Parasite Tracker Thematic Collection Network [website: https://www.globalbioticinteractions/ecm-workshop/]. Zenodo. https://doi.org/10.5281/zenodo.6704580 | ||
* Poelen, | * Dr. Nicolas J. Dowdy, Dr. Erika M. Tucker, Jorrit Poelen, Dr. Vijay Barve, Teresa Mayfield-Meyer, Kathryn Sullivan, & Dr. Jennifer M. Zaspel. (2022). njdowdy/tpt-taxonomy: TPT Taxonomic Resource v2.0.0 (v2.0.0) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.7215550 | ||
'''2021''' | '''2021''' | ||
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* Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., Light, Jessica E., & Tucker, Erika M. (2021). Terrestrial Parasite Tracker indexed biotic interactions and review summary (0.5) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.5572874 | * Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., Light, Jessica E., & Tucker, Erika M. (2021). Terrestrial Parasite Tracker indexed biotic interactions and review summary (0.5) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.5572874 | ||
* | '''2020''' | ||
* Cook, Joseph A and Arai, Satoru and Armién, Blas and Bates, John and Bonilla, Carlos A and Cortez, Maria Beatriz and Dunnum, Jonathan L and Ferguson, Adam W and Johnson, Karl M and Khan, Faisal Ali and Paul, Deborah L and Reeder, DeeAnn M and Revelez, Marcia A and Simmons, Nancy B and Thiers, Barbara M and Thompson, Cody W and Upham, Nathan S and Vanhove, Maarten P and Webala, Paul W and Weksler, Marcelo and Yanagihara, Richard and Soltis, Pamela S. (2020). Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases. BioScience. 70 (7) 531 to 534. [https://academic.oup.com/bioscience/article/70/7/531/5857068 doi:10.1093/biosci/biaa064] | |||
* Zaspel, Jennifer M and Allen, Julie M and Tyrrell, Christopher D and Lemoine, Nate and Jacobus, Luke M and Klem, Crystal and Goodwin, Jillian and Bates, John M. (2020). Human Health, Interagency Coordination, and the Need for Biodiversity Data. BioScience. 70 (7) 527 to 527. [https://academic.oup.com/bioscience/article/70/7/527/5861522 doi:10.1093/biosci/biaa065] | |||
* Poelen, Jorrit H., Seltmann, Katja C., & Campbell, Mariel. (2020). Terrestrial Parasite Tracker indexed biotic interactions and review summary (Version 0.2) [Data set]. [https://zenodo.org/record/3778773#.Y5CxnOzMI_U doi: 10.5281/zenodo.3778773] | |||
* | * Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., & Tucker, Erika M. (2020). Terrestrial Parasite Tracker indexed biotic interactions and review summary (Version 0.1) [Data set]. [https://zenodo.org/record/3685365#.Y5CyCOzMI_U doi: 10.5281/zenodo.3685365]. | ||