Digitizing Fluid-preserved Vertebrate Specimens: Difference between revisions

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Digitizing Fluid-preserved Vertebrate Specimens (view source)

Revision as of 16:44, 26 January 2016

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→‎=AgendaTuesday, March 15, 2016
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*[https://www.idigbio.org/content/digitizing-fluid-preserved-vertebrate-specimens/ Original workshop announcement]
*[https://www.idigbio.org/content/digitizing-fluid-preserved-vertebrate-specimens/ Original workshop announcement]


===Agenda<br>Tuesday, March 15, 2016==
==Agenda<br>Tuesday, March 15, 2016==
{| class="wikitable" style="background-color:#FFF8DC;"
{| class="wikitable" style="background-color:#FFF8DC;"
!colspan="3" | Day One
!colspan="3" | Day One
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|-
|-
|-
|-
|style="vertical-align:top;"|8:40-9:00
|style="vertical-align:top;"|9:15-9:45 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Audubon Core & Data Aggregation to iDigBio
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for imaging fish
|Shelley James, Data Management Coordinator, iDigBio
|Mark Sabaj-Perez, Drexel
|-
|-
|style="vertical-align:top;"|9:00-9:20
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Sampling and Preservation of Genomic Data and Linking Tissue Samples to Vouchers
|Charlotte Seid, Ocean Genome Legacy Center, Northeastern University
|-
|-
|style="vertical-align:top;"|9:45-10:15 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for imaging herps
|Hinrich Kaiser
|-
|-
|style="vertical-align:top;"|9:20-9:40
|-
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Data Management Discussion/Q&A
|style="vertical-align:top;"|10:15-10:45 a.m.
|David Bloom and Shelley James, Moderators
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Break
|-
|-
|style="vertical-align:top;"|10:45-11:15 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for 2D imaging
|Mark Sabaj-Perez
|-
|-
|-
|-
|style="vertical-align:top;"|9:40-10:00
|style="vertical-align:top;"|11:15-12:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Selecting What Should be Transcribed and Databased: Fully Populated vs Skeletal Records
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for 3D imaging
|Carla Cicero, MVZ
|Hank Bart, Tulane<br>Nelson Rios, Tulane
|-
|-
|-
|-
|style="vertical-align:top;"|10:00-10:20
|style="vertical-align:top;"|12:00-12:30 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Digitizing and Linking Source Materials
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for CT imaging
|Christina Fidler, MVZ
|David Blackburn, Florida Museum of Natural History
|-
|-
|-
|-
|style="vertical-align:top;"|10:20-10:40
|style="vertical-align:top;"|12:30-1:30 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Break
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Lunch
|-
|-
|-
|-
|colspan="3" style="text-align:center; vertical-align:top; background-color:#eed1a9;"|<b>Data Issues, Concurrent Breakouts</b>
|style="vertical-align:top;"|1:30-1:45 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Review and discussion of pre-workshop survey results
(including discussion of the status of databasing in fish and herp collections)
|Gil Nelson
|-
|-
|-
|-
|style="vertical-align:top;"|10:40-11:10
|style="vertical-align:top;"|1:45-3:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Aggregators and Serving Data to the Web<br>Dave Bloom<br>Carol Spencer, MVZ, University of California, Berkeley
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Status of imaging at participating collections:
|Digital Asset Management systems and workflows<br>Chris Hoffman, Manager of Informatics Services, IST-Research Information Technologies, UC Berkeley
Each participant to have 3 minutes to outline the status of imaging at their institution.
|Greg Watkins-Colwell, moderator
|-
|-
|-
|-
|style="vertical-align:top;"|11:10-11:40
|style="vertical-align:top;"|3:00-3:30 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Evaluating and Selecting a Database<br>Greg Schneider, University of Michigan
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Break
|Core Data to Preserve for Biodiversity Collections<br>Diego Barroso and Cody Thompson, University of Michigan<br>Laura Abraczinskas, Michigan State University
|-
|-
|-
|-
|style="vertical-align:top;"|11:40-12:10
|style="vertical-align:top;"|3:30-4:30 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Symbiota as a Tool for Online Data Management for Vertebrate Collections<br>Lynda Loucks, University of Central Oklahoma<br>Gil Nelson
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Imaging for data collection: An overview
|Issues in Database Migration<br>Kevin Love, Shelley James, iDigBio, University of Florida<br>Greg Schneider, University of Michigan
|Miriam Zelditch, U. Michigan<br>Donald Swigerski, U. Michigan
|-
|-
|-
|-
|style="vertical-align:top;"|12:10-12:20
|style="vertical-align:top;"|4:30-4:45 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Q&A, Discussion, Morning Wrap-up
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Discussion/Q&A: Imaging for data collection
|David Bloom
|Miriam & Donald<br>moderators
|-
|-
|-
|-
|style="vertical-align:top;"|12:20-1:15
|style="vertical-align:top;"|4:45-5:00 p.m.
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Lunch (provided)
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Daily wrap-up, observations, comments, challenges, criticisms, further discussion
|Greg Watkins-Colwell<br>moderators
|-
|-
|-
|-
|colspan="3" style="text-align:center; vertical-align:top; background-color:#eed1a9;"|<b>Imaging Vertebrate Collections</b>
|rowspan="1" colspan="2" style="vertical-align:top; background-color:#FFF8DC;"|Dinner on Your Own
|-
|-
|-
|-
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