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SPNHC 2014 DemoCamp: Difference between revisions
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#'''Symbiota (Crowdsourcing in LBCC)''' Thiers, B., E. Gilbert, C. Gries, & B. Brandt http://symbiota.org | #'''Symbiota (Crowdsourcing in LBCC)''' Thiers, B., E. Gilbert, C. Gries, & B. Brandt http://symbiota.org | ||
#*'''Purpose:'''A virtual platform for creating voucher-based biodiversity information communities. The suite of integrated modules is designed to mirror the conceptual structure of traditional floras and faunas. Symbiota is exclusively web-based and employs a novel data model, information linking, and algorithms to provide highly dynamic customization. | #*'''Purpose:'''A virtual platform for creating voucher-based biodiversity information communities. The suite of integrated modules is designed to mirror the conceptual structure of traditional floras and faunas. Symbiota is exclusively web-based and employs a novel data model, information linking, and algorithms to provide highly dynamic customization. | ||
#*'''Intended Users:'''Data contributors: collections managers, and authors for checklists, images and illustrations, identification keys, and specimen description; Data consumers: researchers, collections managers, general public | #*'''Intended Users:'''Data contributors: collections managers, and authors for checklists, images and illustrations, identification keys, and specimen description; Data consumers: researchers, collections managers, general public | ||
#*'''Classification:'''Web portal software package, including online data and web presence management | #*'''Classification:'''Web portal software package, including online data and web presence management | ||
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#*'''Licensing Model:'''The code is available from a public SVN repository http://sourceforge.net/projects/symbiota/. The technology framework of PHP, MySQL, and Apache webserver are also open source. | #*'''Licensing Model:'''The code is available from a public SVN repository http://sourceforge.net/projects/symbiota/. The technology framework of PHP, MySQL, and Apache webserver are also open source. | ||
#*'''Platform Requirements:'''The technology framework of PHP, MySQL, and Apache webserver are open source. The portals may be accessed with any modern browser. | #*'''Platform Requirements:'''The technology framework of PHP, MySQL, and Apache webserver are open source. The portals may be accessed with any modern browser. | ||
#'''AnnoSys''' Tschöpe, O., L. Suhrbier, A. Güntsch, & W.G. Berendsohn https://annosys.bgbm.fu-berlin.de/ | |||
#*'''Purpose:'''Repository for complex and cross-linked data including back-end server functionality, web services, a message system, and an on-line user interface. Allows users to create and search for structured annotations of online records. | |||
#*'''Intended Users:'''Scientists, curators, collection managers, collection users, citizen scientists | |||
#*'''Classification:'''Web application | |||
#*'''Technology and Integration:'''Web application providing a workbench oriented user interface based on Eclipse RAP technology. Annotations are stored according to Open Annotation Core Data model in RDF store, annotated records as XML documents. Public Repository access provided by web services supporting Linked Open Data, REST and SPARQL interfaces. | |||
#*'''Licensing Model:'''Usage of web application, annotation data, and code is open source (Mozilla Public Licence V2.0) | |||
#*'''Platform Requirements:'''Client access to web application through any modern standards-compliant web browser | |||
#'''FilteredPush Data Entry''' McCallum, C., P.J. Morris, J. Hanken, M. Kelly, D.B. Lowery, B. Ludaescher, J.A. Macklin, R.A. Morris, & T. Song http://sourceforge.net/p/filteredpush/svn/HEAD/tree/trunk/FP-DataEntry/ | #'''FilteredPush Data Entry''' McCallum, C., P.J. Morris, J. Hanken, M. Kelly, D.B. Lowery, B. Ludaescher, J.A. Macklin, R.A. Morris, & T. Song http://sourceforge.net/p/filteredpush/svn/HEAD/tree/trunk/FP-DataEntry/ | ||
#*'''Purpose:'''The FP-DataEntry plugin speeds up data entry by helping you find records for | #*'''Purpose:'''The FP-DataEntry plugin speeds up data entry by helping you find records for | ||
items like those in your collection, and by copying those records to your own | items like those in your collection, and by copying those records to your own | ||
data entry web application, saving you transcription time and the trouble of copy-and-pasting or retyping. Use cases include botanical duplicates, literature citations, and paleontological localities. The idea is analogous to copy-cataloging in the library world. | data entry web application, saving you transcription time and the trouble of copy-and-pasting or retyping. Use cases include botanical duplicates, literature citations, and paleontological localities. The idea is analogous to copy-cataloging in the library world. | ||
#*'''Intended Users:''' | #*'''Intended Users:'''Staff who transcribe and enter specimen records. Configuration of new instances requires input from collection managers or biodiversity informaticians, and some familiarity with the command line. | ||
#*'''Classification:''' | #*'''Classification:'''Can be used either as a lightweight browser bookmarklet (no changes to existing software are necessary), or for a tighter integration, as a javascript library (added to an existing application, similar to the Geolocate plugin service). In either case, the front end relies on a back end server which the software also provides. | ||
#*'''Technology and Integration:''' | #*'''Technology and Integration:'''Client: Javascript. HTML5 Web Messaging is used to communicate between an iframe and host application. Server: Java. Provided Bash scripts make deployment easier. Solr is used as the index by default, but you may implement a Java interface to use another data source. (GBIF API integration is provided as an example.) | ||
#*'''Licensing Model:''' | #*'''Licensing Model:'''Code is available under GPL 2.0. Running server instances might be shared between institutions that share an interest in particular specimens or data sets. | ||
#*'''Platform Requirements:''' | #*'''Platform Requirements:'''Client: Any modern browser. (Have not tested against IE.) Server: Java 6 or above. Provided scripts deploy either with Jetty (requires a free port and appropriate firewall settings) or with Tomcat (requires appropriate file system permissions). | ||
*[[Media:Small_Collections_Symposium_Agenda_SPNHC2014.pdf|Annotated agenda, including abstracts]] | *[[Media:Small_Collections_Symposium_Agenda_SPNHC2014.pdf|Annotated agenda, including abstracts]] | ||
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*[https://www.idigbio.org/content/recruiting-supporting-and-retaining-small-collections-workshop-student%E2%80%99s-perspective Recruiting, Supporting, and Retaining Small Collections Workshop: A Student’s Perspective] | *[https://www.idigbio.org/content/recruiting-supporting-and-retaining-small-collections-workshop-student%E2%80%99s-perspective Recruiting, Supporting, and Retaining Small Collections Workshop: A Student’s Perspective] | ||
*[http://www.brightcopy.net/allen/cfnl/28-1/index.php#/32 The Small Collections Network: Recruiting, Retaining, and Sustaining Small Collections in Biodiversity Digitization, SPNHC Newsletter, April 2014, Anna Monfils and Gil Nelson] | *[http://www.brightcopy.net/allen/cfnl/28-1/index.php#/32 The Small Collections Network: Recruiting, Retaining, and Sustaining Small Collections in Biodiversity Digitization, SPNHC Newsletter, April 2014, Anna Monfils and Gil Nelson] | ||
==[[Digitization Training Workshops|Digitization Resources Home]]== | ==[[Digitization Training Workshops|Digitization Resources Home]]== | ||