@article {957, title = {Calbug Digitization, CalBug California Arthropod Collections}, year = {2013}, keywords = {Transcription Hackathon}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/citscribe/Calbug_idigbio_Jun.pdf}, author = {Jun Ling Yim} } @article {896, title = {CalBug: Digitizing California Arthropod Collections: Scanning Microscope Slides}, year = {2013}, keywords = {Fluid preserved Invertebrate and Microscopic Slide Imaging Workshop}, url = {https://www.idigbio.org/wiki/images/3/30/Scanning_Microscope_Slides_Oboyski.pdf}, author = {Peter T. Oboyski} } @online {587, title = {California Academy of Sciences, Center for Comparative Genomics CryoCollection}, year = {2013}, abstract = {The Center for Comparative Genomics{\textquoteright} CryoCollection comprises extracted DNA samples from specimens housed at the California Academy of Sciences. The purpose of the CCG CryoCollection is to organize, centralize and preserve the Academy{\textquoteright}s collection of frozen DNA, and to make it available to the scientific community. The collection is currently in the funding and development stages; researchers interested in DNA samples stored in the collection will be able to search for and request samples via the CCG website in the future.}, keywords = {-80C, centralized repository, DNA bank, genetic resources, nucleic acids, ultra-cold collection}, url = {http://research.calacademy.org/ccg/cryo} } @article {1248, title = {California Consortium of Herbaria}, year = {2014}, keywords = {Small Collections}, url = {https://www.idigbio.org/wiki/images/0/04/McDadeLightning.pdf}, author = {Lucinda Mcdade} } @online {588, title = {California Department of Food and Agriculture, California State Collection of Arthropods Frozen Tissue Collection}, year = {2013}, abstract = {The California State Collection of Arthropods (CSCA) Frozen Tissue Collection (FTC) has the capacity to store over 30,000 samples in ultra-cold conditions. Already preserved in the collection are over 1,400 DNA samples, over 2,200 samples of DNA specimen vouchers (specimens from which DNA has been extracted) or whole identified specimens, and Mediterranean fruit fly DNA samples generated by Bruce McPheron (Penn State University). The CSCA FTC is searchable via the CSCA inventory database.}, keywords = {-80C, centralized repository, DNA bank, entomology, frozen tissue collection, genetic resources, nucleic acids, online database, ultra-cold collection}, url = {http://www.cdfa.ca.gov/plant/ppd/csca.html$\#$ftc} } @article {2254, title = {Cameras, copy stands, and imaging}, year = {2015}, keywords = {ASM 2015}, url = {https://www.idigbio.org/wiki/images/d/dd/Moran_ASM-iDigBio_2015.pdf}, author = {Sean Moran} } @article {1252, title = {Can you do this by the end of the week? }, year = {2014}, keywords = {Small Collections}, url = {https://www.idigbio.org/wiki/images/2/27/Seltmann_Can_you_do_this_by_next_week-.pdf}, author = {Katja Seltmann} } @article {1838, title = {Capturing Inventory level information about collections as a step in object to image to data workflows. }, year = {2014}, keywords = {TDWG 2014}, url = {http://idigbio.adobeconnect.com/p2o42nvigxv/}, author = {Paul J Morris and James Hanken and Robert A Morris and David Lowery and Tianhong Song and Patrick Sweeney and Bertram Lud{\"a}scher and James A. Macklin} } @article {1846, title = {Capturing Inventory level information about collections as a step in object to image to data workflows.}, year = {2014}, keywords = {TDWG 2014}, url = {http://www.tdwg.org/fileadmin/2014conference/slides/Morris_InventoryLevelPrecapture.pdf}, author = {Paul J Morris and James Hanken and David Lowery and Bertram Lud{\"a}scher and James A. Macklin and Robert A Morris and Tianhong Song and Patrick Sweeney} } @article {977, title = {Career Tracks in Biology}, year = {2013}, keywords = {Broadening Diversity: Careers and Graduate Study in the Biological Sciences}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/broadening-diversity/Bart-Career\%20Tracks\%20in\%20the\%20biology.pdf}, author = {Henry Bart Jr.} } @article {989, title = {Career Tracks in Biology}, year = {2013}, keywords = {Broadening Diversity: Careers and Graduate Study in the Biological Sciences}, url = {http://vimeo.com/album/2712973/video/85762300}, author = {Charlotte Germaine-Aubrey} } @article {987, title = {Career Tracks in the Biological Science}, year = {2013}, keywords = {Broadening Diversity: Careers and Graduate Study in the Biological Sciences}, url = {http://vimeo.com/album/2712973/video/85738583}, author = {Hank Bart Jr.} } @article {985, title = {Careers and Graduate Study in Biological Sciences Workshop. Preparing for a Biology Major}, year = {2013}, keywords = {Broadening Diversity: Careers and Graduate Study in the Biological Sciences}, url = {http://vimeo.com/album/2712973/video/85617868}, author = {Frank Logiudice} } @article {979, title = {Careers in Biology}, year = {2013}, keywords = {Broadening Diversity: Careers and Graduate Study in the Biological Sciences}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/broadening-diversity/OrlandoPres-germain.pdf}, author = {Charlotte Germaine-Aubrey} } @online {589, title = {Carnegie Museum of Natural History, Mammal Collection}, year = {2013}, abstract = {The Carnegie Museum of Natural History Section of Mammals houses an ancillary collection of frozen tissues for biochemical study from over 12,000 specimens of insectivores, bats, rodents, carnivores, and primates from North America, Africa, and Asia.}, keywords = {-80C, frozen tissue collection, genetic resources, mammalogy, ultra-cold collection}, url = {http://www.carnegiemnh.org/mammals/collections.html} } @article {1851, title = {Case study of reuse of digitised content by creative industry in games: Europeana Creative. }, year = {2014}, keywords = {TDWG 2014}, url = {http://www.tdwg.org/fileadmin/2014conference/slides/Frank_NHEGames.pdf}, author = {Jiri Frank} } @article {1826, title = {Case study of reuse of digitised content by creative industry in games: Europeana Creative}, year = {2014}, keywords = {TDWG 2014}, url = {http://idigbio.adobeconnect.com/p12c1i3emuj/}, author = {Jiri Frank} } @article {1350, title = {Cetaceans~in~silico:~3D~digitizing~a~fossil~whale~graveyard~in~the~Atacama~of~Chile }, year = {2014}, keywords = {Paleo Imaging Workshop}, url = {https://www.idigbio.org/wiki/images/b/b7/Pyenson_iDigBio_UTAustin_3.pdf}, author = {Nicholas D Pyenson} } @article {879, title = {Challenges and Efficiencies of organizing an ADBC TCN project on Southeast Freshwater Macrofauna}, year = {2013}, keywords = {ASB Digitization Workshop}, url = {https://www.idigbio.org/wiki/images/f/f3/Bart_Southeast_Macrofauna_TCN.pdf}, author = {Hank Bart} } @article {2203, title = {Challenges and Obstacles to Digitizing Small Paleontology Collections}, year = {2015}, keywords = {Small Collections Symposium SPNHC 2015, SPNHC 2015}, url = {https://www.idigbio.org/wiki/images/3/39/Vietti_spnhc.pdf}, author = {Laura Vietti} } @article {1240, title = {Challenges and Successes at the University of Iowa}, year = {2014}, keywords = {Small Collections}, url = {https://www.idigbio.org/wiki/images/0/0a/Opitz_iDigBio_Small_Collections_Workshop_slide.pdf}, author = {Cindy Opitz} } @article {2124, title = {Challenges facing Small Museums with Moderate Collections and Minimal Resources }, year = {2015}, keywords = {Strategies for Vertebrate Digitization}, url = {https://www.idigbio.org/wiki/images/9/93/Schmidt-Cornell.pdf}, author = {Curtis Schmidt} } @article {1250, title = {Challenges for large collections reaching out to small collections}, year = {2014}, keywords = {Small Collections}, url = {https://www.idigbio.org/wiki/images/0/01/Hogue-Small_collections_workshop_Apr14.pdf}, author = {Gabriela M Hogue} } @article {1685, title = {Challenges for small town, rural natural history collections }, year = {2014}, keywords = {Leveraging Digitization}, url = {https://www.idigbio.org/wiki/images/8/80/SantaBarbara_Focus_Stacking.pdf}, author = {Mary Beth} } @article {1706, title = {Challenges In Database Selection and Design }, year = {2014}, keywords = {Leveraging Digitization}, url = {https://www.idigbio.org/wiki/images/f/f4/Brenskelle-iDB.pdf}, author = {Laura Brenskelle} } @article {685, title = {Challenges to making paleontological data usable for a~broader audience}, year = {2013}, keywords = {SPNHC, SPNHC 2013}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2013/Holroyd-SPNHC2013.pdf}, author = {Pat Holroyd} } @article {1422, title = {Chemistry Day WISE Girlz Spring Camp- Carbon Dioxide Production}, year = {2014}, abstract = {Dr. Myers blows-up the kitchen }, keywords = {WISE Girlz Science Spring Camp Education and Outreach}, url = {http://vimeo.com/album/2800212/video/90264118}, author = {iDigBio} } @article {1421, title = {Chemistry Day WISE Girlz Spring Camp- Surface Tension}, year = {2014}, abstract = {Dr. Myers floats needles }, keywords = {WISE Girlz Science Spring Camp Education and Outreach}, url = {http://vimeo.com/album/2800212/video/90264405}, author = {iDigBio} } @article {1772, title = {Chinese Field Museum}, year = {2014}, keywords = {Summit 2014}, url = {https://www.idigbio.org/wiki/images/8/87/Ma_Keping_CFH-20141028.pdf}, author = {Keping Ma} } @article {1801, title = {Chinese Field Museum}, year = {2014}, keywords = {Summit 2014}, url = {http://vimeo.com/album/3113100/video/111036675}, author = {Keping Ma} } @article {2251, title = {Choosing an Appropriate Collection Database }, year = {2015}, keywords = {ASM 2015}, url = {https://www.idigbio.org/wiki/images/d/dd/Mathis-ASM_iDigBio_Presentation.pdf}, author = {Verity L. Mathis} } @online {590, title = {Cincinnati Museum of Natural History, Department of Zoology}, year = {2013}, abstract = {The zoology collection of the Cincinnati Museum of Natural History houses nearly 3,500 frozen tissue specimens primarily from vertebrate groups. This collection includes avian tissues (ca.1,800 specimens, including considerable material from the Philippines and Eastern North America), mammal tissues (ca.1,000 specimens), and a rapidly growing tissue collection for reptiles and amphibians (ca. 700 specimens) and fishes (ca. 100 specimens).}, keywords = {frozen tissue collection, genetic resources, herpetology, ichthyology, mammalogy, ornithology, vertebrates}, url = {http://www.cincymuseum.org/research/zoology} } @article {2198, title = {Citizen science: A symbiotic future for research and education using biological collections}, year = {2015}, keywords = {Small Collections Symposium SPNHC 2015, SPNHC 2015}, url = {https://www.idigbio.org/wiki/images/4/43/Meineke_spnhc.pdf}, author = {Emily Meineke and Steven D. Frank and Robert Dunn} } @conference {2534, title = {Citizen science as a tool for expanding our capacity to georeference biodiversity specimens}, booktitle = {Botany 15, Botanical Society of America Annual Meeting 2015}, year = {2015}, month = {07/2015}, address = {Edmonton, Alberta, Canada}, abstract = {The majority of the world{\textquoteright}s billions of biodiversity specimens are tucked away in museum cabinets with only minimal, if any, digital records of the information they contain. Most specimens were collected before the use of digital photography, database management systems, or global positioning systems (GPS) and therefore their discoverability for use in research and education are limited. Global efforts to digitize specimens {\textendash} including imaging, transcribing label information, and georeferencing collection localities {\textendash} are underway, yet the task is daunting. However, many activities associated with digitization do not require special training, and as such can benefit from the involvement of citizen scientists. Here, we examine the efficacy of citizen scientists in georeferencing herbarium specimen collection localities, i.e. assigning a latitude and longitude to a textual locality description. In this experiment, each of 270 specimens was georeferenced ~8 times using the online platform GEOLocate. All specimens were collected in the highly biodiverse Apalachicola National Forest, Florida, USA. For comparison with the volunteer-derived points, an {\textquotedblleft}expert{\textquotedblright} familiar with the local flora and collection areas also georeferenced each specimen and provided a radius of uncertainty based on the precision of the textual locality description. The locality details provided on herbarium specimen labels varied greatly, as did the volunteers{\textquoteright} estimation of localities. Volunteer points were an average of 4.62 km from the expert point of the same specimen, with a range of averages between less than half to over 30 km. We also examined the number of volunteer georeferences that, when averaged, would provide a locality estimate within the expert{\textquoteright}s radius of uncertainty. We found that this number was highly dependent upon the details provided in the label text. These findings suggest that citizen scientists are capable of providing accurate georeferences of herbarium specimens, and we recommend that the downstream use of data be considered when employing citizen scientists in this activity. For certain applications of georeferenced data, for example landscape-level modeling, locality estimations from citizen scientists that fall within 5 km of the collection site are likely suitable. Finer scale applications, for example resampling the same population or individual, may require a level of precision beyond what a minimally trained citizen scientist can provide. As online mapping tools and georeferencing software improves, the ability of citizen scientists to provide precise georeferences will increase.}, keywords = {BSA2015}, url = {http://2015.botanyconference.org/engine/search/index.php?func=detail\&aid=895}, author = {Ellwood, Elizabeth R. and Bart, H. and Krings, M. and Jue, Dean and Mann, J. and Rios, Nelson and Mast, Austin R.} } @article {1576, title = {Citizen science, crowd sourcing, public participation, and BIOSPEX}, year = {2014}, keywords = {Small Herbarium Workshop Botany 2014}, url = {https://www.idigbio.org/wiki/images/2/29/Ellwood_NANSH_Botany.pdf}, author = {Libby Ellwood} } @article {1684, title = {Citizen science programs }, year = {2014}, keywords = {Leveraging Digitization}, url = {https://www.idigbio.org/wiki/images/f/f1/Citizen_Science_EClites.pdf}, author = {Erica Clites} } @article {971, title = {CITScribe Hackathon Development Track 1}, year = {2013}, keywords = {Transcription Hackathon}, url = {http://vimeo.com/album/2670372/video/83334912}, author = {iDigBio} } @article {969, title = {CITScribe Hackathon Development Track 2}, year = {2013}, keywords = {Transcription Hackathon}, url = {http://vimeo.com/album/2670372/video/83334914}, author = {Jun Ying Lim and Anthony Kirchgessner and Al Matthews and Chuck McCallum} } @article {970, title = {CITScribe Hackathon Development Track 3}, year = {2013}, keywords = {Transcription Hackathon}, url = {http://vimeo.com/album/2670372/video/83334913}, author = {Jun Ying Lim} } @article {972, title = {CITScribe Hackathon Development Track 4 "Team Honey Badger"}, year = {2013}, keywords = {Transcription Hackathon}, url = {http://vimeo.com/album/2670372/video/83334911}, author = {iDigBio} } @article {929, title = {Cleaning data with OpenRefine}, year = {2013}, keywords = {Paleo Digitization Workshop}, url = {https://www.idigbio.org/wiki/images/2/22/OpenRefine.pdf}, author = {Una Farrell} } @article {1537, title = {Cleaning Validating and Enhancing Data with Open Refine}, year = {2013}, keywords = {iDigBio Georeferencing Workshop Group (GWG), iDigBio GWG TTT 2}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/ttt2/OpenRefineTTT22013.pptx}, author = {Deborah L Paul} } @article {1270, title = {Climate Change, Hydrology and Aquatic Species Distribution}, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {https://www.idigbio.org/wiki/images/8/8a/Knouft_idigbio_seminar.pdf}, author = {Jason Knouft} } @article {1348, title = {Close Range Photogrammetric Analyses of an Active Paleontological Excavation }, year = {2014}, keywords = {Paleo Imaging Workshop}, url = {https://www.idigbio.org/wiki/images/c/c6/Price-ForTexas.pdf}, author = {Maribeth Price} } @conference {2424, title = {Closing the gap - building a strong and productive network between amateurs and professionals in Paleontology.}, booktitle = {2015 GSA Annual Meeting}, year = {2015}, month = {11/2015}, address = {Baltimore, Maryland}, abstract = {The great natural history collections in museums and universities all over the country are the backbone of national and international research in taxonomy, biodiversity and evolution. The bulk of the collections has its origin in private engagement and was donated by private collectors and enthusiasts. Even the most iconic of fossils (e.g. Archaeopteryx lithographica, von Meyer 1861) stem from the playground of amateur paleontologists and private collectors. It is hard to imagine how much more of such icons may lie dormant unnoticed in private cabinets. The NSF funded FOSSIL Project is focused on attracting fossil hunters of all ages and level of experience to participate in academic research in general and special digital database like myFOSSIL and iDigBio in particular. Thirty representatives of U.S. fossil organizations completed an online survey about their clubs{\textquoteright} current activities and member interest in new initiatives. The majority of club members are active users of the Web, with 77\% of representatives reporting that members already use online image galleries. Ninety percent reported that club members would be interested in access to additional online digital resources, and 80\% or higher reported members to be interested in training in collection curation in either workshops or online webinars. To that end, the Fossil Project in partnership with iDigBio has begun providing training to amateurs that will allow them to contribute in meaningful ways to the digitization of fossil collections. Just a few advice in how to clean, prepare and image their fossils and how to upload the digital data might sometimes be enough to fulfill all the requirements needed to not just get access into the myFOSSIL database but also to be part of the FOSSIL and iDigBio world. In giving them the platform and appropriate guidance in terms of different types of tutorials, networking, personal interaction and discussion, we pave the way for a prospering and fruitful community. With respect to amateurs{\textquoteright} personal collections, we aim to increase their appreciation of the potential value of their collections when coupled with sound curatorial and imaging practices. As amateurs gain skills, we anticipate increased interest and participation in the national effort to digitize collections. Geological Society of America Abstracts with Programs. Vol. 47, No. 7, p.748}, keywords = {EF-1115210, GSA2015, poster}, url = {https://gsa.confex.com/gsa/2015AM/webprogram/Paper268213.html}, author = {Leder, Ronny M.} } @article {2151, title = {Co-collection of physical and media specimens: why bother? (frogs) }, year = {2015}, keywords = {Strategies for Vertebrate Digitization}, url = {https://www.idigbio.org/wiki/images/0/07/Brown.frogs.and.media.pdf}, author = {Rafe Brown} } @booklet {1184, title = {Code and Data for the Social Sciences: A Practitioner{\textquoteright}s Guide}, year = {2014}, abstract = {What does it mean to do empirical social science? Asking good questions. Digging up novel data. Designing statistical analysis. Writing up results. For many of us, most of the time, what it means is writing and debugging code. We write code to clean data, to transform data, to scrape data, and to merge data. We write code to execute statistical analyses, to simulate models, to format results, to produce plots. We stare at, puzzle over, fight with, and curse at code that isn{\textquoteright}t working the way we expect it to. We dig through old code trying to figure out what we were thinking when we wrote it, or why we{\textquoteright}re getting a different result from the one we got the week before. Even researchers lucky enough to have graduate students or research assistants who write code for them still spend a significant amount of time reviewing code, instructing on coding style, or fixing broken code. Though we all write code for a living, few of the economists, political scientists, psychologists, sociologists, or other empirical researchers we know have any formal training in computer science. Most of them picked up the basics of programming without much effort, and have never given it much thought since. Saying they should spend more time thinking about the way they write code would be like telling a novelist that she should spend more time thinking about how best to use Microsoft Word. Sure, there are people who take whole courses in how to change fonts or do mail merge, but anyone moderately clever just opens the thing up and figures out how it works along the way. This manual began with a growing sense that our own version of this self-taught seat-of-the-pants approach to computing was hitting its limits. Copyright (c) 2014, Matthew Gentzkow and Jesse M. Shapiro. E-mail: matthew.gentzkow@chicagobooth.edu, jesse.shapiro@chicagobooth.edu. Please cite this document as: Gentzkow, Matthew and Jesse M. Shapiro. 2014. Code and Data for the Social Sciences: A Practitioner{\textquoteright}s Guide. University of Chicago mimeo, http://faculty.chicagobooth.edu/matthew.gentzkow/research/CodeAndData.pdf, last updated January 2014.}, keywords = {code, Data analysis, Data Mining, Data reuse, Data Standards, research methods}, url = {http://faculty.chicagobooth.edu/matthew.gentzkow/research/CodeAndData.pdf}, author = {Matthew Gentzkow and Jesse M. Shapiro} } @article {1424, title = {CoGe: Collaborative Georeferencing Demo}, year = {2014}, keywords = {Collaborative Georeferencing Demo Webinar}, url = {http://vimeo.com/96842882}, author = {iDigBio} } @article {450, title = {Collaborating with iDigBio on Grant Proposals}, year = {2012}, abstract = {As part of its role as national resource, iDigBio is often asked to comment on grant proposals to various funding agencies. This document provides guidance on topics related to collaboration with iDigBio, interaction with the iDigBio Portal, and commitment of services by iDigBio for grant proposals.}, keywords = {documentation}, url = {https://www.idigbio.org/sites/default/files/sites/default/files/Collaborating-with-iDigBio-on-Grant-Proposals.pdf}, author = {iDigBio} } @article {1436, title = {Collaboration to Automation}, year = {2013}, abstract = {John Wieczorek}, keywords = {iDigBio Georeferencing Workshop Group (GWG)}, url = {http://vimeo.com/album/2163673/video/53006304}, author = {iDigBio} } @article {703, title = {Collaborative databasing of North American Bee Collections (NSF-BRC Grant)}, year = {2010}, keywords = {Mobilization}, url = {http://ecnweb.org/sites/default/files/21b_Yanega_2010.pdf}, author = {Yanega} } @article {881, title = {Collaborative Digitization Workflows with Specify 6}, year = {2013}, keywords = {ASB Digitization Workshop}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/Bentley-iDigBio.pptx}, author = {Andy Bentley} } @conference {2518, title = {Collecting experiences in Melanesia - best practices for efficient digitization}, booktitle = {Island Biology 2016}, year = {2016}, month = {07/2016}, address = {Terceira Island, Azores}, abstract = {The processes of field collection of natural history specimens, keeping track of the physical specimens through the curation and distribution process, and converting data from field notebook into digital format and delivery to data aggregator, can be complex. Legacy collections are expensive and time consuming to digitize, and error corrections are often complicated to resolve. As such, developing best practices for new field collections for efficient digitization and data sharing is critical for avoiding the often repeated efforts of digitization within multiple natural history collections and propagation errors that can result. Understanding the data life cycle for natural history collections, from collection methodologies to dissemination and data sharing, requires a knowledge of the appropriate use of identifiers, and understanding data standards such as Darwin and Audubon Core. Gathering data fit-for-research-use at the time of collection, including essential data fields and supplementary information such as trait or environmental data, results in reproducible research and rapidly discoverable data. This presentation will highlight these concepts as they apply to island biology and biodiversity research, with lessons learned from experiences of fieldwork in the tropical islands of Melanesia.}, author = {James, Shelley A.} } @article {704, title = {Collection Data Registration at the Nationaal Herbarium Nederland: Data Guidelines}, year = {2007}, keywords = {Databasing}, url = {http://www.nationaalherbarium.nl/virtual/Data-guidelines-NHN.pdf}, author = {L. P. M. Willemse and J. B. Mols} } @article {1711, title = {Collection Digitization Process and Workflow }, year = {2014}, keywords = {Leveraging Digitization}, url = {https://www.idigbio.org/wiki/images/7/7e/Fahy_SBMNH_VZ_workflow_iDigBio.pdf}, author = {Krista Fahy} } @article {1877, title = {Collection Management Panel Discussion}, year = {2014}, keywords = {ECN 2014}, url = {https://www.idigbio.org/wiki/images/c/cb/Oboyski_ECN_2014.pdf}, author = {Peter Oboyski~} } @proceedings {1297, title = {Collections for the 21st Century Day1 11am-12pm }, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {http://idigbio.adobeconnect.com/p7s2wu6gx4f/}, author = {iDigBio} } @proceedings {1298, title = {Collections for the 21st Century Day1 1:30pm-3pm}, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {http://idigbio.adobeconnect.com/p57kb3i5qno/}, author = {iDigBio} } @proceedings {1299, title = {Collections for the 21st Century Day1 3:30pm-5pm}, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {http://idigbio.adobeconnect.com/p51jdeu1soj/}, author = {iDigBio} } @proceedings {1296, title = {Collections for the 21st Century Day1 8am-10:30am}, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {http://idigbio.adobeconnect.com/p8v2m4xp2qe/}, author = {iDigBio} } @proceedings {1301, title = {Collections for the 21st Century Day2 10:30am-12pm}, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {http://idigbio.adobeconnect.com/p5a1mvhmzbq/}, author = {iDigBio} } @proceedings {1300, title = {Collections for the 21st Century Day2 8:30am-10am}, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {http://idigbio.adobeconnect.com/p1t9saxi6ys/}, author = {iDigBio} } @article {2199, title = {Collections Internships for College Students: Designing an Interdisciplinary Program}, year = {2015}, keywords = {Small Collections Symposium SPNHC 2015, SPNHC 2015}, url = {https://www.idigbio.org/wiki/images/1/1a/Smith_spnhc.pdf}, author = {Emily Smith} } @article {1231, title = {Collections Web Update: Building a Community of Natural History Collections}, year = {2014}, keywords = {Small Collections}, url = {https://www.idigbio.org/wiki/images/6/64/Powers_Prather_iDigBio.pdf}, author = {Alan Prather} } @article {1274, title = {Collections-From Local to Global- Building Strength in an Interconnected Digital World}, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {https://www.idigbio.org/wiki/images/c/cd/Daly-iDigBio_Mon_1630_Daly_local_to_global-vf.pdf}, author = {Joanne Daly} } @article {787, title = {Community Building: Collaboration \& Opportunities}, year = {2013}, keywords = {Summit 3}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/summit3/CommunityBuilding_RR_Breakout.pdf}, author = {Richard Rabeler}, editor = {Joanna McCaffrey} } @conference {1414, title = {A Computational- and Storage-Cloud for Integration of Biodiversity Collections}, booktitle = {Proceedings of the 2013 IEEE 9th International Conference on e-Science}, year = {2013}, publisher = {IEEE}, organization = {IEEE}, address = {Beijing, China}, abstract = {A core mission of the Integrated Digitized Biocollections (iDigBio) project is the building and deployment of a cloud computing environment customized to support the digitization workflow and integration of data from all U.S. nonfederal biocollections. iDigBio chose to use cloud computing technologies to deliver a cyberinfrastructure that is flexible, agile, resilient, and scalable to meet the needs of the biodiversity community. In this context, this paper describes the integration of open source cloud middleware, applications, and third party services using standard formats, protocols, and services. In addition, this paper demonstrates the value of the digitized information from collections in a broader scenario involving multiple disciplines.}, keywords = {appliances, biocollections infrastructure, biodiversity, cloud computing, data access, data store, digitization, EF-1115210}, doi = {10.1109/eScience.2013.48}, url = {http://dx.doi.org/10.1109/eScience.2013.48}, author = {Matsunaga, Andr{\'e}a and Thompson, Alex and Figueiredo, Renato J. and Germain-Aubrey, Charlotte C. and Collins, Matthew and Beaman, Reed S. and MacFadden, Bruce J. and Riccardi, Greg and Soltis, Pamela S. and Page, Lawrence M. and Fortes, Jos{\'e} A.B.} } @article {901, title = {Conceptualizing and implementing large-scale collection digitization}, year = {2013}, keywords = {Fluid preserved Invertebrate and Microscopic Slide Imaging Workshop}, url = {https://www.idigbio.org/wiki/images/2/24/Brilmyer_idig_bio.pdf}, author = {Gracen Brilmyer} } @article {2255, title = {Connecting your data to the outside world }, year = {2015}, keywords = {ASM 2015}, url = {https://www.idigbio.org/wiki/images/3/33/Dunnum_ASM_2015_Idigbio_talk.pdf}, author = {Jonathan L. Dunnum} } @online {591, title = {Conner Museum (Washington State University)}, year = {2013}, abstract = {The Conner Museum collection provides a reservoir of material{\textendash} including a frozen tissue collection{\textendash}upon which molecular studies of animal diversity in the Pacific Northwest can be based.}, keywords = {frozen tissue collection, genetic resources}, url = {http://sbs.wsu.edu/connermuseum/research.html} } @article {1985, title = {Considerations for selecting a collections management system}, year = {2015}, keywords = {database, Digitizing Dried Insects Digitization Workshop, software}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/chicago2013/Chicago_Considerations.pdf}, author = {Joanna McCaffrey} } @article {772, title = {Consortium of California Herbaria}, year = {2013}, keywords = {Summit 3}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/summit3/CCH-Baxter.pdf}, author = {David Baxter} } @article {1960, title = {Consortium of California Herbaria workflows }, year = {2015}, keywords = {Workflows Herbarium Digitization}, url = {https://www.idigbio.org/wiki/images/d/dc/CCH_workflows_Nazaire.pdf}, author = {Mare Nazaire} } @article {775, title = {Consortium of Pacific Northwest Herbaria}, year = {2013}, keywords = {Summit 3}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/summit3/Legler_PNW_Herbaria.pdf}, author = {Ben Legler} } @article {1002, title = {Consortium of Pacific Northwest Herbaria}, year = {2013}, keywords = {Summit 3}, url = {http://vimeo.com/album/2684234/video/84150430}, author = {Ben Legler} } @article {991, title = {Contemporary~Methods~in Assembling~and~Using~the Tree~of~Life. }, year = {2013}, keywords = {Broadening Diversity: Careers and Graduate Study in the Biological Sciences}, url = {http://vimeo.com/album/2712973/video/85762697}, author = {Pamela Soltis} } @article {981, title = {Contemporary Methods in Assembling and Using the Tree of Life}, year = {2013}, keywords = {Broadening Diversity: Careers and Graduate Study in the Biological Sciences}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/broadening-diversity/Orlando-iDB-workshop-Soltis.pdf}, author = {Pamela Soltis} } @online {592, title = {Cornell University Museum of Vertebrates}, year = {2013}, abstract = {The Cornell University Museum of Vertebrates is an internationally recognized institution dedicated to the study of vertebrates (fishes, amphibians, reptiles, birds and mammals). The collections contain over 1.5 million specimens from all over the world, and the museum serves as the primary repository for vouchers and tissues collected by past, and present Cornellians.}, keywords = {frozen tissue collection, genetic resources, herpetology, ichthyology, mammalogy, ornithology, vertebrates}, url = {http://www.cumv.cornell.edu/} } @article {885, title = {Creating a 21st Century Virtual Herbarium at the University of Maryland}, year = {2013}, keywords = {ASB Digitization Workshop}, url = {https://www.idigbio.org/wiki/images/2/23/Schuster_ASB_21stCentury_virtual_herbarium_UMD_11April2013_iDigBio.pdf}, author = {Tanja M. Schuster and Nikolaus G. Anderson and Maile C. Neel} } @article {945, title = {Creating~Herbarium~Labels with~Mail~Merge~in~Word}, year = {2013}, keywords = {Small Herbarium Workshop FSU}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Using\%20Label\%20Merge.pdf}, author = {Richard Carter} } @article {946, title = {Creating~Herbarium~Labels with~Mail~Merge~in~Word}, year = {2013}, keywords = {Small Herbarium Workshop FSU}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/small-herbarium2013/Using\%20Label\%20Merge.pdf}, author = {Richard Carter} } @article {917, title = {Creating workflows for effective data migration and imaging in an invertebrate paleontology collection}, year = {2013}, keywords = {Paleo Digitization Workshop}, url = {https://www.idigbio.org/wiki/images/1/16/Workflows_Molineux.pdf}, author = {Ann Molineux} } @article {2260, title = {Creation of Virtual Collections Available to all Through the Use of www.morphosource.org}, year = {2015}, keywords = {3D Digitization of Fossils for Educators \& Citizen Scientists}, url = {https://www.idigbio.org/wiki/images/d/dc/Morphosource.pdf}, author = {Doug Boyer} } @article {2147, title = {Creative methods for utilizing collections for education and outreach}, year = {2015}, keywords = {Strategies for Vertebrate Digitization}, url = {https://www.idigbio.org/wiki/images/8/8b/Singer-Ithaca_EO_Talk_2015.pdf}, author = {Randy Singer} } @article {682, title = {Creative~ways to use botanical specimens in climate change~research}, year = {2013}, keywords = {SPNHC, SPNHC 2013}, url = {https://www.idigbio.org/sites/default/files/workshop-presentations/spnhc2013/PrimackIdgibio2013.pdf}, author = {Richard Primack} } @article {1565, title = {Crowd-sourced science: digitized natural history collections extends its branches to education and outreach}, year = {2014}, keywords = {Digitized Natural History Collections Symposium Botany 2014}, url = {http://idigbio.adobeconnect.com/p6v46r0n6z2/}, author = {Matt Von Konrat} } @article {1195, title = {Crowdsourcing: Available Resources}, year = {2014}, keywords = {Biological Collections Digitization in the Pacific}, url = {https://www.idigbio.org/wiki/images/2/26/Flemons_Hawaii2014_Available_Resources_Crowdsourcing_PF.pdf}, author = {Paul Flemons} } @conference {2415, title = {Crowdsourcing Biodiversity Data Mobilization}, booktitle = {TDWG 2015}, year = {2015}, keywords = {EF-1115210, Presentation, TDWG2015}, author = {Ellwood, Elizabeth R.} } @article {2532, title = {Crowdsourcing Collection Digitization: Solving a Science Problem and Improving STEM Literacy}, year = {2015}, abstract = {Congressional Briefing entitled "Digitization: New Tools for Increasing the Use of Natural History Collections for Research, Education and Informed Decisionmaking", Natural Science Collections Alliance, U.S. Capitol, Washington, D.C., December 2015}, author = {Mast, Austin R.} } @article {1191, title = {Crowd-sourcing, Public Participation, and Data Enrichment Using crowd-sourcing tools }, year = {2014}, keywords = {Biological Collections Digitization in the Pacific}, url = {https://www.idigbio.org/wiki/images/c/c8/Crowd-sourcing\%2C_Public_Participation\%2C_and_Data_Enrichment_-_Using_crowd-sourcing_tools.pdf}, author = {Nicole Fisher} } @article {1969, title = {Crowd-sourcing, volunteers, blitzes }, year = {2015}, keywords = {Workflows Herbarium Digitization}, url = {https://www.idigbio.org/wiki/images/a/a4/Mast_Crowd_Valdosta_15.pdf}, author = {Austin Mast} } @article {695, title = {CSIRO Workshop: Integrated Digitized Biocollections(iDigBio) An Introduction}, year = {2013}, url = {http://idigbio.adobeconnect.com/p34rm2fvj0u/}, author = {Gil Nelson} } @article {2136, title = {CT scanning of museum specimens in research: a case study}, year = {2015}, keywords = {Strategies for Vertebrate Digitization}, url = {https://www.idigbio.org/wiki/images/1/13/McCune-idigBioTalk.pdf}, author = {Amy McCune} } @article {1237, title = {Curating a Natural History Collection while succeeding in Academia (and helping to make a better place for collections and curators)}, year = {2014}, keywords = {Small Collections}, url = {https://www.idigbio.org/wiki/images/1/1a/McDade.CurationCredit.pdf}, author = {Lucinda Mcdade} } @article {1192, title = {Curation web resources}, year = {2014}, keywords = {Biological Collections Digitization in the Pacific}, url = {https://www.idigbio.org/wiki/images/e/e3/Curation_web-style.pdf}, author = {Shelley James} } @article {2071, title = {Curator{\textquoteright}s perspective}, year = {2015}, keywords = {Field to Database}, url = {http://idigbio.adobeconnect.com/p68flaqagcg/}, author = {iDigBio} } @article {1856, title = {The Current State of Arthropod Biodiversity Data: Addressing Impacts of Global Change}, year = {2014}, keywords = {ECN 2014}, url = {https://www.idigbio.org/wiki/images/b/b5/Cobb_Seltmann_Franz_ECN_2014_3.pdf}, author = {Neil S. Cobb and Katja Seltmann and Nico Franz} } @article {1271, title = {The Current State of Arthropod Biodiversity Data: Addressing Impacts of Global Change }, year = {2014}, keywords = {Collections for the 21st Century Symposium}, url = {https://www.idigbio.org/wiki/images/3/3f/Cobb_Seltmann_Franz_21st_Century_7.pdf}, author = {Neil Cobb} } @article {1397, title = {Customizing forms}, year = {2014}, keywords = {Specify for Paleo Workshop}, url = {https://desktopconnect.ku.edu/p9fxqw9t1ar/}, author = {iDigBio} } @article {290, title = {Cyberinfrastructure and the NSF Dimensions of Biodiversity Program Solicitation - Planning for Success}, year = {2010}, month = {10/2010}, abstract = {The NSF {\textquoteleft}Dimensions of Biodiversity{\textquoteright} program recognizes that emerging technologies in compu- ting and cyberinfrastructure are revolutionizing our ability to investigate the broad scale patterns and processes underlying biodiversity. This report documents the outcomes of an NSF sponsored workshop (DBI-1047800) held at Madison, WI during October 13-15, 2010 that was charged with identifying aspects of cyberinfrastructure necessary for supporting successful research in the Di- mensions of Biodiversity program. Workshop participants represented a broad spectrum of discip- lines, ranging from cyberinfrastructure, informatics, and computer science to biodiversity, biology, and environmental science, and provided excellent insights into the major cyberinfrastructure needs of biodiversity science.}, keywords = {CI, Workshop Report}, url = {https://www.idigbio.org/sites/default/files/sites/default/files/CIDimensionsReportAndNSF_v1.pdf}, author = {Corinna Gries and Allen Rodrigo and Matthew B. Jones and David Vieglais} }