IDigBio Working Groups: Difference between revisions

Jump to navigation Jump to search

IDigBio Working Groups (view source)

Revision as of 12:39, 28 April 2021

8,025 bytes added ,  28 April 2021
→‎API User Group (R-based)
(32 intermediate revisions by 10 users not shown)
Line 1: Line 1:
[[Category:API]]
[[Category:aOCR]]
[[Category:aOCR]]
[[Category:Authority files]]
[[Category:Authority files]]
Line 39: Line 40:


= Active Working Groups  =
= Active Working Groups  =
== API User Group (R-based) ==
{| border="0" cellpadding="4" style="width:95%"
|-
'''Background:''' This group originated based on conversations at the ADBC Summit 2019. You can link to this wiki section using the short link '''[http://bit.ly/idigbio-api-wg http://bit.ly/idigbio-api-wg]'''.
|}
{| class="wikitable" border="1"
|-
! width="20%" scope="col"| Data Field
! width="80%" scope="col" | Details
|-
|valign="top"| '''Status'''
| Active
|-
|valign="top"| '''Members'''
|
*[mailto:ekrimmel@fsu.edu Erica Krimmel], iDigBio / Florida State University
*Shelly Gaynor, University of Florida
*Ron Canepa, iDigBio / University of Florida
*Cat Chapman, iDigBio / University of Florida
*Deb Paul, iDigBio / Florida State University
|-
|valign="top"| '''Mission & Scope'''
| This group focuses on using tools such as the iDigBio API (Application Programming Interface) to work with biodiversity occurrence data in R for the purposes of both collections management, e.g. to review specimen data quality issues, and downstream research, e.g. to facilitate reproducible and reusable methods. Community members of all backgrounds (collections staff, researchers, IT, etc.) and levels of programming experience (including R novice) are encouraged to use this group as a place to discover and discuss API data access, issues, and solutions, as well as to build a dispersed network of API power users. This group will maintain a repository of relevant code for reuse and identify concrete improvements that could be made to the iDigBio API documentation.
|-
|valign="top"| '''Links'''
|
*'''[https://github.com/biodiversity-specimen-data/specimen-data-use-case User group on GitHub]'''
*[https://github.com/iDigBio/idigbio-search-api/wiki iDigBio Search API documentation]
*[https://github.com/idigbio/ridigbio iDigBio API library for R (ridigbio)]
|-
|valign="top"| '''Meetings'''
|
Join us for [https://www.idigbio.org/content/2021-open-office-hours-hosted-api-user-group-r-based open office hours] on the second and fourth Wednesday of every month at 3:30pm Eastern!
|}
== Arctos Working Group ==
== Arctos Working Group ==


Line 51: Line 92:
|valign="top"| '''Members'''  
|valign="top"| '''Members'''  
|  
|  
[mailto:arctos-working-group@googlegroups.com Carla Cicero] (Chair), Museum of Vertebrate Zoology, Berkeley, CA
[mailto:arctos-working-group@googlegroups.com Mariel Campbell] (Chair), Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM


Please see a complete and up-to-date list of additional working group members on the [https://arctosdb.org/join-arctos/support/ arctosdb.org website.]
Please see a complete and up-to-date list of additional working group members on the [https://arctosdb.org/join-arctos/support/ arctosdb.org website.]
Line 69: Line 110:
|valign="top"| '''Webinar Recordings'''  
|valign="top"| '''Webinar Recordings'''  
|
|
*[https://www.youtube.com/watch?v=XQwXw0e9w-E&t=44s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=2 Arctos Introduction for Non-Managers] (June 6, 2017)
*[https://www.youtube.com/watch?v=miVsxdMuGEs&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=2 Introduction to Arctos as a CMS and Community] (September 12, 2017)
*[https://www.youtube.com/watch?v=miVsxdMuGEs&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=2 Introduction to Arctos as a CMS and Community] (September 12, 2017)
*[https://www.youtube.com/watch?v=lY5kDQNQ8VA&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=3 Basic and Advanced Searching in Arctos] (October 10, 2017)
*[https://www.youtube.com/watch?v=lY5kDQNQ8VA&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=3 Basic and Advanced Searching in Arctos] (October 10, 2017)
Line 74: Line 116:
*[https://www.youtube.com/watch?v=n06u4rni5z8&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=5 Projects, Publications and Citations in Arctos] (December 12, 2017)
*[https://www.youtube.com/watch?v=n06u4rni5z8&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=5 Projects, Publications and Citations in Arctos] (December 12, 2017)
*[https://www.youtube.com/watch?v=fUE5deS_hLo&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=6 Data Entry and Bulkloading in Arctos] (January 9, 2018)
*[https://www.youtube.com/watch?v=fUE5deS_hLo&list=PLA1YSv1rn8XcR6Pe0qyNuM8h07GB87bMh&index=6 Data Entry and Bulkloading in Arctos] (January 9, 2018)
*[https://www.youtube.com/watch?v=qvxcQ6RDA-U&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=3&t=1s Data Cleaning Tools for use Prior to Migrating into Arctos] (February 13, 2018)
*[https://www.youtube.com/watch?v=iVVq0HKbVNU&t=0s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=9 Introduction to Cultural Collections in Arctos] (February 13, 2018)
*[https://www.youtube.com/watch?v=X5Pwtn7PG10&t=7s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=10 Tissues, Containers, and Object Tracking in Arctos] (April 10, 2018)
*[https://www.youtube.com/watch?v=FGSvTOoGrac&t=1s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=11 Arctos Reports] (May 8, 2018)
*[https://www.youtube.com/watch?v=ocEr1Tl-iNo&t=6s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=12 Arctos Open Office Hours I] (June 12, 2018)
*[https://www.youtube.com/watch?v=4e-NK8rNSTs&t=278s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=13 Geography Part I: How Arctos handles Geographical Data] (October 9, 2018)
*[https://www.youtube.com/watch?v=YuP-hr6yvCU&t=1422s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=14 Geography Part II: Georeferencing and Best Practices of Locality Management] (November 13, 2018)
*[https://www.youtube.com/watch?v=1AMQ8SfrXiU&t=12s&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&index=15 Arctos Taxonomy] (December 11, 2018)
*[https://www.youtube.com/watch?v=O0cxguPytmI&index=15&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma Arctos Media] (February 13, 2019)
*[https://www.youtube.com/watch?v=TkNerELuljg&index=18&list=PLih71md2knDh9vQ1uQ0MPBVly1bQ8JSma&t=1s Arctos Open Office Hours II: Bells & Whistles] (March 13, 2019)
|}
|}


Line 138: Line 190:
|-
|-
|valign="top"| '''Status'''  
|valign="top"| '''Status'''  
| Active
| Done (Inactive), activated when a need arises
|-
|-
|valign="top"| '''Members'''  
|valign="top"| '''Members'''  
Line 175: Line 227:
*[[Augmenting OCR Working Group Resources|Augmenting OCR Working Group Resources]]  
*[[Augmenting OCR Working Group Resources|Augmenting OCR Working Group Resources]]  
*[mailto:IDIGBIO-AOCR-L@lists.ufl.edu Augmenting OCR Listserv]  
*[mailto:IDIGBIO-AOCR-L@lists.ufl.edu Augmenting OCR Listserv]  
|}
== Biodiversity Collection Management Solutions Working Group ==
{| border="0" cellpadding="4" style="width:95%"
|-
|'''Background:''' A Special Interest Group for Collections Management Software Providers was scheduled as part of the Society for Preservation of Natural History Collections Meeting in Chicago (2019) with this program abstract:
The Collections Management Software Special Interest Group is open to anyone who develops, manages, or uses specialized collection management software as well as those who aggregate data generated from these systems. We will begin a conversation regarding interoperability and data quality issues affecting all natural history collections.
In response to the meeting, a [https://groups.google.com/forum/?hl=en#!forum/biodiversity-collections-management-solutions-si Google Forum Group] has been created to continue discussion.
|}
{| class="wikitable" border="1"
|-
! width="20%" scope="col"| Data Field
! width="80%" scope="col" | Details
|-
|valign="top"| '''Status'''
| Active
|-
|valign="top"| '''Members'''
|
*[mailto:jegelewicz66@gmail.com Teresa J. Mayfield-Meyer] (Organizer) and representing [https://arctosdb.org/about Arctos] as [mailto:arctos.treasurer@gmail.com Treasurer of the Arctos Working Group]
*[mailto:dpaul@fsu.edu Deborah Paul], iDigBio User Services (Adviser)
*[mailto:jbest@brit.org Jason Best], Director Biodiversity Informatics at [http://www.brit.org/ BRIT]
*[mailto:campmlc@unm.edu Mariel Campbell] at [https://msb.unm.edu/index.html Museum of Southwestern Biology], [https://msb.unm.edu/divisions/genomics/index.html Division of Genomic Resources] and representing [https://arctosdb.org/about Arctos] as [mailto:arctos.chair@gmail.com Chair of the Arctos Working Group]
*Helen Dailey
*Kate Doyle
*Elana Dux
*Lisa Goldberg
*[mailto:shelley.james@rbgsyd.nsw.gov.au Shelley James], National Herbarium of NSW, Collections Manager and Head Curator
*Stevie Kennedy-Gold
*Jenna Lanman
*Holly Little
*Matthew Lowe
*Katherine Mallalieu
*Tiana Rehman
*Samantha Shea
*Diana Soteropoulos
*Brianne Varnerin
|-
|valign="top"| '''Mission & Scope'''
|The members of this group are seeking solutions that will increase interoperability between existing biodiversity collection management solutions and improve data quality overall.
|-
|valign="top"| '''Links'''
|
*[https://groups.google.com/forum/?hl=en#!forum/biodiversity-collections-management-solutions-sig Google Discussion Forum]
|-
|}
|}


Line 465: Line 567:
*[mailto:fw04@my.fsu.edu Fang Wang], Florida State University
*[mailto:fw04@my.fsu.edu Fang Wang], Florida State University
*[mailto:aweeks3@gmu.edu Andrea Weeks], George Mason University
*[mailto:aweeks3@gmu.edu Andrea Weeks], George Mason University
*[mailto:proot@indiana.edu Polly Root Sturgeon], Indiana Geological and Water Survey
|-
|-
|valign="top"| '''Mission & Scope'''  
|valign="top"| '''Mission & Scope'''  
Line 564: Line 667:
<br /> [[Georeferencing Working Group | Georeferencing Working Group Wiki]]: about the working group, meeting notes and links to documentation from the working group. <br / >
<br /> [[Georeferencing Working Group | Georeferencing Working Group Wiki]]: about the working group, meeting notes and links to documentation from the working group. <br / >
[mailto:idigbiogwg-L@lists.ufl.edu GWG listserve] <br /> Meeting Room  http://idigbio.adobeconnect.com/geotrain <br />
[mailto:idigbiogwg-L@lists.ufl.edu GWG listserve] <br /> Meeting Room  http://idigbio.adobeconnect.com/geotrain <br />
|}
== iDAGUnite (iDigBio, DiSSCo, ALA, and GBIF Unite) Working Group  ==
{| class="wikitable" border="1"
|-
! width="20%" scope="col" class="unsortable" | Data Field
! width="80%" scope="col" class="unsortable" | Details
|-
|valign="top"| '''Status'''
| Active
|-
|valign="top"| '''Members'''
|
*[https://www.idigbio.org/contact/Dr._Gil_Nelson Gil Nelson], iDigBio Digitization (Lead)
*[mailto:eellwood@ufl.eddu Libby Ellwood], iDigBio Global Communications Manager (co-lead)
|-
|valign="top"| '''Mission &amp; Scope'''
| The iDAGUnite (iDigBio, DiSSCo, ALA, and GBIF Unite) Working Group is working to formalize and expand existing cooperative relationships among the world’s four largest biodiversity data aggregation networks to catalyze a quantum leap in the availability and accessibility of biodiversity research data worldwide. This group will establish iDAGUnite as a global Network of Networks (NoN) of people, data, and infrastructure and address the mandates of two worldwide conferences of experts designed to facilitate these efforts.
|-
|valign="top"| '''Overlap with Other Working Groups'''
| &nbsp;
|-
|valign="top"| '''Links'''
|[[iDAGUnite|Wiki]],
|}
|}


Line 574: Line 704:
|-
|-
|valign="top"| '''Status'''  
|valign="top"| '''Status'''  
| Active
| (Inactive), but content now being found relevant for COVID19 needs
|-
|-
|valign="top"| '''Members'''  
|valign="top"| '''Members'''  
Line 754: Line 884:
|  
|  


*[https://www.idigbio.org/contact/Dr._Gil_Nelson Gil Nelson], iDigBio Digitization (Lead)
*Talia Karim, University of Colorado Boulder (Co-Lead)
*[https://www.idigbio.org/contact/Dr._Gil_Nelson Gil Nelson], iDigBio (Co-Lead)
*Holly Little, Smithsonian National Museum of Natural History
*Carrie Levitt-Bussian, Natural History Museum of Utah
*[https://www.idigbio.org/contact/Erica_Krimmel Erica Krimmel], iDigBio
*[https://www.idigbio.org/contact/Deborah_Paul Deb Paul], iDigBio
*Roger Burkhalter, Oklahoma Museum of Natural History
*Amanda Millhouse, Smithsonian National Museum of Natural History
*Lindsay Walker, Natural History Museum of Los Angeles County
*Jessica Miller-Camp, University of Indiana
*Susan Butts, Yale Peabody Museum


|-
|-
| '''Mission &amp; Scope'''  
| '''Mission &amp; Scope'''  
| TBD
| All things paleontology, data, and digitization. We are also coordinating with the TDGW Paleo Interest Group [https://github.com/tdwg/paleo].
|-
|-
| '''Overlap with Other Working Groups'''  
| '''Overlap with Other Working Groups'''  
Line 817: Line 957:
*Barbara Thiers
*Barbara Thiers
*Hank Bart
*Hank Bart
*Kevin Love
*Larry Page (ExOfficio)
*Larry Page (ExOfficio)
|-
|-
Line 832: Line 971:


|}
|}
== Symbiota Working Group (SWG)==
== Symbiota Working Group (SWG)==


Line 840: Line 980:
|-
|-
|valign="top"| '''Status'''  
|valign="top"| '''Status'''  
| Active
| Not Active
|-
|-
|valign="top"| '''Members'''  
|valign="top"| '''Members'''  
Line 1,010: Line 1,150:
|  
|  
*[mailto:jmccaffrey@flmnh.ufl.edu Joanna McCaffrey], FLMNH, iDigBio (Lead)
*[mailto:jmccaffrey@flmnh.ufl.edu Joanna McCaffrey], FLMNH, iDigBio (Lead)
*[mailto:cbester@flmnh.ufl.edu Cathy Bester], FLMNH, iDigBio
*[mailto:djennings@flmnh.ufl.edu David Jennings], FLMNH, iDigBio
*[mailto:djennings@flmnh.ufl.edu David Jennings], FLMNH, iDigBio
*[mailto:klove@flmnh.ufl.edu Kevin Love], FLMNH, iDigBio
*[mailto:gnelson@bio.fsu.edu Gil Nelson], FSU, iDigBio
*[mailto:gnelson@bio.fsu.edu Gil Nelson], FSU, iDigBio
*[mailto:dpaul@fsu.edu Deb Paul], FSU, iDigBio
*[mailto:dpaul@fsu.edu Deb Paul], FSU, iDigBio
Line 1,079: Line 1,217:
|  
|  
*[http://www.idigbio.org/contact/Renato_J._Figueiredo Renato Figueiredo], (Co-Lead), iDigBio IT  
*[http://www.idigbio.org/contact/Renato_J._Figueiredo Renato Figueiredo], (Co-Lead), iDigBio IT  
*[http://www.idigbio.org/contact/Joanna_McCaffrey Joanna McCaffrey] (Co-Lead), iDigBio Biodiversity Informatics Manager
*[http://www.idigbio.org/contact/Kyuho_Jeong Kyuho Jeong], iDigBio IT
*[http://www.idigbio.org/contact/Kyuho_Jeong Kyuho Jeong], iDigBio IT
*[http://www.idigbio.org/contact/Kevin_Love Kevin Love], iDigBio IT
*[http://www.idigbio.org/contact/Dan_Stoner Dan Stoner], iDigBio IT
*[http://www.idigbio.org/contact/Dan_Stoner Dan Stoner], iDigBio IT
*[http://www.idigbio.org/contact/Alex_Thompson Alex Thompson], iDigBio IT
*[mailto:ranglin@wisc.edu Robert Anglin] [[Documenting the Occurrence through Space and Time of Aquatic Non-indigenous Fish, Mollusks, Algae, and Plants Threatening North_America's Great Lakes| Great Lakes Invasives]] TCNs IT
*[mailto:ranglin@wisc.edu Robert Anglin] [[Documenting the Occurrence through Space and Time of Aquatic Non-indigenous Fish, Mollusks, Algae, and Plants Threatening North_America's Great Lakes| Great Lakes Invasives]] TCNs IT
*[mailto:beach@ku.edu James Beach], [[Creating A PALEONICHES| Paleoniches TCN]] IT/Co-PI, University of Kansas
*[mailto:beach@ku.edu James Beach], [[Creating A PALEONICHES| Paleoniches TCN]] IT/Co-PI, University of Kansas
Ekrimmel
646

edits

Retrieved from "http://www.idigbio.org/wiki/index.php/Special:MobileDiff/26607...31367"

Navigation menu