646
edits
IDigBio Working Groups: Difference between revisions
Jump to navigation
Jump to search
→API User Group (R-based)
| (18 intermediate revisions by 6 users not shown) | |||
| Line 1: | Line 1: | ||
[[Category:API]] | |||
[[Category:aOCR]] | [[Category:aOCR]] | ||
[[Category:Authority files]] | [[Category:Authority files]] | ||
| Line 39: | Line 40: | ||
= Active Working Groups = | = Active Working Groups = | ||
== API User Group (R-based) == | |||
{| border="0" cellpadding="4" style="width:95%" | |||
|- | |||
'''Background:''' This working group originated based on conversations at the ADBC Summit 2019. You can link to this wiki section using the short link '''[http://bit.ly/idigbio-api-wg http://bit.ly/idigbio-api-wg]'''. | |||
|} | |||
{| class="wikitable" border="1" | |||
|- | |||
! width="20%" scope="col"| Data Field | |||
! width="80%" scope="col" | Details | |||
|- | |||
|valign="top"| '''Status''' | |||
| Active | |||
|- | |||
|valign="top"| '''Members''' | |||
| | |||
*[mailto:ekrimmel@fsu.edu Erica Krimmel], iDigBio / Florida State University | |||
*Shelly Gaynor, University of Florida | |||
*Ron Canepa, iDigBio / University of Florida | |||
*Cat Chapman, iDigBio / University of Florida | |||
*Deb Paul, iDigBio / Florida State University | |||
|- | |||
|valign="top"| '''Mission & Scope''' | |||
| This working group focuses on using tools such as the iDigBio API (Application Programming Interface) to work with biodiversity occurrence data in R for the purposes of both collections management, e.g. to review specimen data quality issues, and downstream research, e.g. to facilitate reproducible and reusable methods. Community members of all backgrounds (collections staff, researchers, IT, etc.) and levels of programming experience (including R novice) are encouraged to use this working group as a place to discover and discuss API data access, issues, and solutions, as well as to build a dispersed network of API power users. This working group will maintain a repository of relevant code for reuse and identify concrete improvements that could be made to the iDigBio API documentation. | |||
|- | |||
|valign="top"| '''Links''' | |||
| | |||
*'''[https://github.com/biodiversity-specimen-data Working group on GitHub]''' | |||
*[https://github.com/iDigBio/idigbio-search-api/wiki iDigBio Search API documentation] | |||
*[https://github.com/idigbio/ridigbio iDigBio API library for R (ridigbio)] | |||
*[https://github.com/ropensci/spocc Species occurrence data toolkit for R (spocc)] | |||
|- | |||
|valign="top"| '''Meetings''' | |||
| | |||
Join us for [https://www.idigbio.org/content/open-office-hours-hosted-api-user-group-r-based open office hours] on the second and fourth Wednesday of every month at 4pm Eastern! | |||
If you attend the open office hours session, '''please take a minute to [https://ufl.qualtrics.com/jfe/form/SV_4YEKQpse5nqwQFD fill out this survey]'''. | |||
|} | |||
== Arctos Working Group == | == Arctos Working Group == | ||
| Line 51: | Line 95: | ||
|valign="top"| '''Members''' | |valign="top"| '''Members''' | ||
| | | | ||
[mailto:arctos-working-group@googlegroups.com | [mailto:arctos-working-group@googlegroups.com Mariel Campbell] (Chair), Museum of Southwestern Biology, University of New Mexico, Albuquerque, NM | ||
Please see a complete and up-to-date list of additional working group members on the [https://arctosdb.org/join-arctos/support/ arctosdb.org website.] | Please see a complete and up-to-date list of additional working group members on the [https://arctosdb.org/join-arctos/support/ arctosdb.org website.] | ||
| Line 186: | Line 230: | ||
*[[Augmenting OCR Working Group Resources|Augmenting OCR Working Group Resources]] | *[[Augmenting OCR Working Group Resources|Augmenting OCR Working Group Resources]] | ||
*[mailto:IDIGBIO-AOCR-L@lists.ufl.edu Augmenting OCR Listserv] | *[mailto:IDIGBIO-AOCR-L@lists.ufl.edu Augmenting OCR Listserv] | ||
|} | |||
== Biodiversity Collection Management Solutions Working Group == | |||
{| border="0" cellpadding="4" style="width:95%" | |||
|- | |||
|'''Background:''' A Special Interest Group for Collections Management Software Providers was scheduled as part of the Society for Preservation of Natural History Collections Meeting in Chicago (2019) with this program abstract: | |||
The Collections Management Software Special Interest Group is open to anyone who develops, manages, or uses specialized collection management software as well as those who aggregate data generated from these systems. We will begin a conversation regarding interoperability and data quality issues affecting all natural history collections. | |||
In response to the meeting, a [https://groups.google.com/forum/?hl=en#!forum/biodiversity-collections-management-solutions-si Google Forum Group] has been created to continue discussion. | |||
|} | |||
{| class="wikitable" border="1" | |||
|- | |||
! width="20%" scope="col"| Data Field | |||
! width="80%" scope="col" | Details | |||
|- | |||
|valign="top"| '''Status''' | |||
| Active | |||
|- | |||
|valign="top"| '''Members''' | |||
| | |||
*[mailto:jegelewicz66@gmail.com Teresa J. Mayfield-Meyer] (Organizer) and representing [https://arctosdb.org/about Arctos] as [mailto:arctos.treasurer@gmail.com Treasurer of the Arctos Working Group] | |||
*[mailto:dpaul@fsu.edu Deborah Paul], iDigBio User Services (Adviser) | |||
*[mailto:jbest@brit.org Jason Best], Director Biodiversity Informatics at [http://www.brit.org/ BRIT] | |||
*[mailto:campmlc@unm.edu Mariel Campbell] at [https://msb.unm.edu/index.html Museum of Southwestern Biology], [https://msb.unm.edu/divisions/genomics/index.html Division of Genomic Resources] and representing [https://arctosdb.org/about Arctos] as [mailto:arctos.chair@gmail.com Chair of the Arctos Working Group] | |||
*Helen Dailey | |||
*Kate Doyle | |||
*Elana Dux | |||
*Lisa Goldberg | |||
*[mailto:shelley.james@rbgsyd.nsw.gov.au Shelley James], National Herbarium of NSW, Collections Manager and Head Curator | |||
*Stevie Kennedy-Gold | |||
*Jenna Lanman | |||
*Holly Little | |||
*Matthew Lowe | |||
*Katherine Mallalieu | |||
*Tiana Rehman | |||
*Samantha Shea | |||
*Diana Soteropoulos | |||
*Brianne Varnerin | |||
|- | |||
|valign="top"| '''Mission & Scope''' | |||
|The members of this group are seeking solutions that will increase interoperability between existing biodiversity collection management solutions and improve data quality overall. | |||
|- | |||
|valign="top"| '''Links''' | |||
| | |||
*[https://groups.google.com/forum/?hl=en#!forum/biodiversity-collections-management-solutions-sig Google Discussion Forum] | |||
|- | |||
|} | |} | ||
| Line 766: | Line 860: | ||
| | | | ||
*[https://www.idigbio.org/contact/Dr._Gil_Nelson Gil Nelson], iDigBio | *Talia Karim, University of Colorado Boulder (Co-Lead) | ||
*[https://www.idigbio.org/contact/Dr._Gil_Nelson Gil Nelson], iDigBio (Co-Lead) | |||
*Holly Little, Smithsonian National Museum of Natural History | |||
*Carrie Levitt-Bussian, Natural History Museum of Utah | |||
*[https://www.idigbio.org/contact/Erica_Krimmel Erica Krimmel], iDigBio | |||
*[https://www.idigbio.org/contact/Deborah_Paul Deb Paul], iDigBio | |||
*Roger Burkhalter, Oklahoma Museum of Natural History | |||
*Amanda Millhouse, Smithsonian National Museum of Natural History | |||
*Lindsay Walker, Natural History Museum of Los Angeles County | |||
*Jessica Miller-Camp, University of Indiana | |||
*Susan Butts, Yale Peabody Museum | |||
|- | |- | ||
| '''Mission & Scope''' | | '''Mission & Scope''' | ||
| | | All things paleontology, data, and digitization. We are also coordinating with the TDGW Paleo Interest Group [https://github.com/tdwg/paleo]. | ||
|- | |- | ||
| '''Overlap with Other Working Groups''' | | '''Overlap with Other Working Groups''' | ||
| Line 829: | Line 933: | ||
*Barbara Thiers | *Barbara Thiers | ||
*Hank Bart | *Hank Bart | ||
*Larry Page (ExOfficio) | *Larry Page (ExOfficio) | ||
|- | |- | ||
| Line 844: | Line 947: | ||
|} | |} | ||
== Symbiota Working Group (SWG)== | == Symbiota Working Group (SWG)== | ||
| Line 1,022: | Line 1,126: | ||
| | | | ||
*[mailto:jmccaffrey@flmnh.ufl.edu Joanna McCaffrey], FLMNH, iDigBio (Lead) | *[mailto:jmccaffrey@flmnh.ufl.edu Joanna McCaffrey], FLMNH, iDigBio (Lead) | ||
*[mailto:djennings@flmnh.ufl.edu David Jennings], FLMNH, iDigBio | *[mailto:djennings@flmnh.ufl.edu David Jennings], FLMNH, iDigBio | ||
*[mailto:gnelson@bio.fsu.edu Gil Nelson], FSU, iDigBio | *[mailto:gnelson@bio.fsu.edu Gil Nelson], FSU, iDigBio | ||
*[mailto:dpaul@fsu.edu Deb Paul], FSU, iDigBio | *[mailto:dpaul@fsu.edu Deb Paul], FSU, iDigBio | ||
| Line 1,091: | Line 1,193: | ||
| | | | ||
*[http://www.idigbio.org/contact/Renato_J._Figueiredo Renato Figueiredo], (Co-Lead), iDigBio IT | *[http://www.idigbio.org/contact/Renato_J._Figueiredo Renato Figueiredo], (Co-Lead), iDigBio IT | ||
*[http://www.idigbio.org/contact/Kyuho_Jeong Kyuho Jeong], iDigBio IT | *[http://www.idigbio.org/contact/Kyuho_Jeong Kyuho Jeong], iDigBio IT | ||
*[http://www.idigbio.org/contact/Dan_Stoner Dan Stoner], iDigBio IT | *[http://www.idigbio.org/contact/Dan_Stoner Dan Stoner], iDigBio IT | ||
*[mailto:ranglin@wisc.edu Robert Anglin] [[Documenting the Occurrence through Space and Time of Aquatic Non-indigenous Fish, Mollusks, Algae, and Plants Threatening North_America's Great Lakes| Great Lakes Invasives]] TCNs IT | *[mailto:ranglin@wisc.edu Robert Anglin] [[Documenting the Occurrence through Space and Time of Aquatic Non-indigenous Fish, Mollusks, Algae, and Plants Threatening North_America's Great Lakes| Great Lakes Invasives]] TCNs IT | ||
*[mailto:beach@ku.edu James Beach], [[Creating A PALEONICHES| Paleoniches TCN]] IT/Co-PI, University of Kansas | *[mailto:beach@ku.edu James Beach], [[Creating A PALEONICHES| Paleoniches TCN]] IT/Co-PI, University of Kansas | ||