1,650
edits
No edit summary |
|||
(129 intermediate revisions by 5 users not shown) | |||
Line 1: | Line 1: | ||
{| class="wikitable" style="float:right;" | |||
! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Fluid Preserved Invertebrate Imaging | |||
|- | |||
| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE--> [[File: Fluid_Preserved_Logo.PNG |center|300px| ]]<br /> | |||
|- | |||
!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Fluid Preserved Invertebrate Imaging Workshop | |||
|- | |||
|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Workshop Agenda] | |||
|- | |||
|[https://www.idigbio.org/biblio?f%5bkeyword%5d=271 Fluid Preserved Invertebrate Imaging Workshop Biblio Entries] | |||
|- | |||
|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Report] | |||
|} | |||
==Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki== | ==Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki== | ||
This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of | This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki. | ||
==Digitization Training Workshops Wiki Home== | |||
*[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home] | |||
==Workshop Announcement== | |||
*[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement] | |||
==Fluid preserved arthropod imaging Workshop Report]== | |||
*[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report] | |||
==Arthropod and slide imaging interest group wiki== | |||
*[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki] | |||
==Workshop Agenda and Logistics== | |||
*[[Media:InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf|Tentative Workshop Outline]] | |||
*[[Media:Logistics_shuttle_meals.pdf|Shuttle info, hotel assignments, and meal plan]] | |||
*[[Media:Invert_Imaging_Workshop_Participants_Email.pdf|A few last-minute logistical details (text of e-mail, 2013-09-04)]] | |||
*[http://uunions.umich.edu/league/inn/ Information about Michigan League] | |||
*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel] | |||
*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League] | |||
*[[Media:Leaguemap.pdf|Downloadable pdf map from Bell Tower to Michigan League]] | |||
*[[Media:Central_large.pdf|U. Michigan Campus map]] | |||
*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology] | |||
==Nearby (and not-so-nearby) Restaurants== | |||
*[http://uunions.umich.edu/league/food/restaurants/ Restaurants at Michigan League] | |||
*[http://www.gogobot.com/inn-at-the-michigan-league-ann-arbor-hotel--nearby--restaurants Restaurants near Michigan League] | |||
*[https://maps.google.com/maps?fll=42.277368326826966,-83.73925255554201&fspn=0.004858198152959403,0.009741783142089844&safe=off&st=115968771510351694523&ie=UTF-8&q=restaurants+near+university+of+michigan+ann+arbor&fb=1&gl=us&ll=42.277368326826966,-83.73925255554201&spn=0.004858198152959403,0.009741783142089844&rq=1&ei=44spUr6EI4Tw8QTbm4CQCw&ved=0CPMBEMgT Map of restaurants in Ann Arbor (Michigan League is at flag J for reference)] | |||
== Collaborative Notes Documents == | |||
*[https://docs.google.com/document/d/1VMEuM67Yy9glNCoFxr0R-1Bz1lp_criAuzvduzy_UhY/edit?usp=sharing Day 1] | |||
*[https://docs.google.com/document/d/14PyXh7jTesAsYbOUi5R4reG0cOwvo0mTRQsJmsrOqzw/edit?usp=sharing Day 2] | |||
*[https://docs.google.com/document/d/1ge_HIOpH1tvm_F-bmAGZ7nZHcrRkKhueuNwdOLd7NUs/edit?usp=sharing Issues Summary] | |||
==Presentations== | |||
*[[Media:IDigBio_Intro.pdf|Introduction to iDigBio, Gil Nelson]] | |||
*[[Media:Brantley_InvertImaging_2013.pdf|Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]] | |||
*[[Media:DIY_Techniques.pdf|DIY Techniques, Mark O'Brien]] | |||
*[[Media:Patrick_spider_imaging.pdf|Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]] | |||
*[[Media:Scanning_Microscope_Slides_Oboyski.pdf|Scanning Microscope Slides, Peter Oboyski]] | |||
*[[Media:Naturalis_microscopic_slides.pdf|Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]] | |||
*[[Media:Hand_sanitizer_Droege.pdf|Macro photography in hand sanitizer, Sam Droege]] | |||
*[[Media:Final_Stephanie_Ware_02.pdf|Slide imaging at the Field Museum, Stephanie Ware]] | |||
*[[Media:IDIGBIO_WORKING.pdf|Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith]] | |||
*[[Media:Brilmyer_idig_bio.pdf|Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer]] | |||
*[[Media:Hedin_iDigBio_presentation.pdf|Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]] | |||
*[[Media:Selden.pdf|Imaging techniques in the study of fossil spiders, Paul Selden]] | |||
*[[Media:Lightroom_presentation.pdf|Processing images with Lightroom, Rich Rabeler]] | |||
*[[Media:Imaging_Vic_Smith.pdf|Fluid-preserved imaging, Roy Larimer]] | |||
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]] | |||
== Workshop Recordings == | |||
*[http://idigbio.adobeconnect.com/p38b8xvyben/ Day 1 AM Session 8:15am-10:30am] | |||
*[http://idigbio.adobeconnect.com/p7djloaq40w/ Day 1 AM Session 11am-12:30pm] | |||
*[http://idigbio.adobeconnect.com/p32zu1pozn8/ Day 1 PM Session 4:15pm- 5pm] | |||
*[http://idigbio.adobeconnect.com/p92ihei2kp4/ Day 2 AM Session 8:15am- 10:15am] | |||
*[http://idigbio.adobeconnect.com/p8fh0tconam/ Day 2 AM Session 10:30am- 12:15pm] | |||
*[http://idigbio.adobeconnect.com/p9bq9n3yadn/ Day 2 PM Lightroom Demo Session] | |||
*[http://idigbio.adobeconnect.com/p1zalz4mex3/ Day 2 PM O'Brien Demo Session] | |||
*[http://idigbio.adobeconnect.com/p4nctnt76u8/ Day 2 PM Closing Session 5pm- 5pm] | |||
==Images for Review== | |||
*[[Media:08-10-29_Erig_blaesa2_comp.jpg|Spider from Sandy Brantley 1]] | |||
*[[Media:Xy_cu_07-12-20_114944_R8_S4.jpg|Spider from Sandy Brantley 2]] | |||
==Documentation== | |||
*[http://essigdb.berkeley.edu/search_labels.html Essig Museum of Entomology microscopic slide image database]. Search for "Aetheca" in the filename (as an example) and click on the filename link to see the image. Contributed by Pete Oboyski.] | |||
*[http://www.velehanden.nl/projecten/bekijk/details/project/nat_nbc Crowd Sourcing project for glass slides at Naturalis Biodiversity Center (Google Chrome translates the site nicely)] | |||
*[http://www.youtube.com/watch?v=S-_yvIsucOY How to Take High Resolution Macro photographs Using a Simple Studio Setup: Camera Equipment (Sam Droege)] | |||
*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)] | |||
*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)] | |||
*[[Media:How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf|Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]] | |||
*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images] | |||
*[[Media:Leica_Imaging_Manual_July1_2013.pdf|LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer]] | |||
*[[Media:Ant_Databasing_Protocols_August.pdf|Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]] | |||
*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]] | |||
==[https://www.idigbio.org/ | ==Workflow Documents== | ||
*[https://www.idigbio.org/content/workflow-modules-and-task-lists iDigBio community-generated modular workflows, including those for things in spirits in jars] | |||
==Workshop | ==Interesting Sidelights== | ||
*[http://www.news.com.au/technology/sci-tech/at-this-scale-no-insect-is-ugly-up-close-and-personal-with-creepy-crawlies/story-fn5fsgyc-1226719021395 Recent news article from Australia highlighting Sam Droege and his images] | |||
*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images] | |||
*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page] | |||
*[[Dried Insect Digitization Workshop|Pinned insect digitization workshop, Chicago, Spring 2013]] | |||
*[[Wet Collections Digitization Workshop|Wet collections digitization wiki, U. Kansas, March 2013]] | |||
*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy] | |||
*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu] | |||
*[http://www.irfanview.com/ IrfanView software for file re-naming] | |||
*[http://www.barcode-labels.com/ Potential source for bar codes suggested by Mariel Campbell] | |||
*[http://www.gaylord.com/adblock.asp?abid=718&search_by=desc&search_for=selfadhesive%20labels&mpc=WW Potential source for labels suggested by Joost Leusen] |
edits