Fluid Preserved Invertebrate Imaging: Difference between revisions

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-==Workshop Agenda==
+{| class="wikitable" style="float:right;"
+! colspan="2" style="background:#D58B28;width:200px;font-size:10pt" | Fluid Preserved Invertebrate Imaging
+|-
+| colspan="2" style="text-align:center;font-size:7pt" |<!--YOU CAN INSERT A NEW IMAGE FOR THE LOGO BETWEEN THE COLON AND THE PIPE--> [[File: Fluid_Preserved_Logo.PNG ‎|center|300px| ]]<br />
+|-
+!colspan="2" style="background:#D58B28;text-align:center;font-size:9pt" | Quick Links for Fluid Preserved Invertebrate Imaging Workshop
+|-
+|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Workshop Agenda]
+|-
+|[https://www.idigbio.org/biblio?f%5bkeyword%5d=271 Fluid Preserved Invertebrate Imaging Workshop Biblio Entries]
+|-
+|[https://www.idigbio.org/wiki/images/2/21/InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf Fluid Preserved Invertebrate Imaging Report]
+|}
+==Fluid-preserved Invertebrate and Microscopic Slide Imaging Workshop Wiki==
+This wiki contains materials supporting iDigBio's Fluid-preserved Invertebrate and Microscopic Slide Imaging to be held at the University of Michigan, September 16-18, 2013. Included are links to resources, outlines, and training materials related to workshop content. Use the link immediately below to return to the main Digitization Resources wiki.
+==Digitization Training Workshops Wiki Home==
+*[https://www.idigbio.org/wiki/index.php/Digitization_Training_Workshops Digitization Training Workshops Wiki Home]
+==Workshop Announcement==
+*[https://www.idigbio.org/content/fluid-preserved-invertebrate-imaging-workshop-opportunity Workshop Announcement]
+==Fluid preserved arthropod imaging Workshop Report]==
+*[https://www.idigbio.org/content/entomologists-gather-ann-arbor-explore-fluid-preserved-arthropod-imaging Workshop Report]
+==Arthropod and slide imaging interest group wiki==
+*[https://www.idigbio.org/wiki/index.php/Fluid_Preserved_Arthropds Arthropod and slide imaging interest group wiki]
+==Workshop Agenda and Logistics==
+*[[Media:InvertImagingDigitizationWorkshopAgenda.docx_%281%29.pdf|Tentative Workshop Outline]]
+*[[Media:Logistics_shuttle_meals.pdf|Shuttle info, hotel assignments, and meal plan]]
+*[[Media:Invert_Imaging_Workshop_Participants_Email.pdf|A few last-minute logistical details (text of e-mail, 2013-09-04)]]
+*[http://uunions.umich.edu/league/inn/ Information about Michigan League]
+*[http://www.belltowerhotel.com/?gclid=CMqM6O_tyrgCFREV7AodNzEAOg Bell Tower Hotel]
+*[https://maps.google.com/maps?saddr=300+S.+Thayer+St.,+Ann+Arbor,+MI+48104&daddr=911+N+University+Ave,+Ann+Arbor,+MI&hl=en&sll=42.279103,-83.737997&sspn=0.004142,0.007322&geocode=FVAhhQIdXDsC-yk_NuTyQK48iDFSfGN9EDMrcQ%3BFT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg&t=h&dirflg=w&mra=ltm&z=19 Google Map link: Walking from Bell Tower to Michigan League]
+*[[Media:Leaguemap.pdf|Downloadable pdf map from Bell Tower to Michigan League]]
+*[[Media:Central_large.pdf|U. Michigan Campus map]]
+*[https://maps.google.com/maps?saddr=911+N+University+Ave,+Ann+Arbor,+MI&daddr=1109+Geddes+Avenue+Ann+Arbor,+MI+48109-1079%3B+911+north+university+ann+arbor,+MI&hl=en&sll=42.278869,-83.736778&sspn=0.004799,0.008256&geocode=FT4fhQIdwEMC-ynPuSsRQa48iDEX3hDSHAvuGg%3BFSgchQIdsE8C-yn1aGHrQ648iDH00aSWfUj7yQ&t=h&gl=us&dirflg=w&mra=ltm&z=19 Walking map: Michigan League to the U. Michigan Museum of Zoology]
+==Nearby (and not-so-nearby) Restaurants==
+*[http://uunions.umich.edu/league/food/restaurants/ Restaurants at Michigan League]
+*[http://www.gogobot.com/inn-at-the-michigan-league-ann-arbor-hotel--nearby--restaurants Restaurants near Michigan League]
+*[https://maps.google.com/maps?fll=42.277368326826966,-83.73925255554201&fspn=0.004858198152959403,0.009741783142089844&safe=off&st=115968771510351694523&ie=UTF-8&q=restaurants+near+university+of+michigan+ann+arbor&fb=1&gl=us&ll=42.277368326826966,-83.73925255554201&spn=0.004858198152959403,0.009741783142089844&rq=1&ei=44spUr6EI4Tw8QTbm4CQCw&ved=0CPMBEMgT Map of restaurants in Ann Arbor (Michigan League is at flag J for reference)]
+== Collaborative Notes Documents ==
+*[https://docs.google.com/document/d/1VMEuM67Yy9glNCoFxr0R-1Bz1lp_criAuzvduzy_UhY/edit?usp=sharing Day 1]
+*[https://docs.google.com/document/d/14PyXh7jTesAsYbOUi5R4reG0cOwvo0mTRQsJmsrOqzw/edit?usp=sharing Day 2]
+*[https://docs.google.com/document/d/1ge_HIOpH1tvm_F-bmAGZ7nZHcrRkKhueuNwdOLd7NUs/edit?usp=sharing Issues Summary]
+==Presentations==
+*[[Media:IDigBio_Intro.pdf|Introduction to iDigBio, Gil Nelson]]
+*[[Media:Brantley_InvertImaging_2013.pdf|Reflections on imaging invertebrate specimens in alcohol, Sandy Brantley]]
+*[[Media:DIY_Techniques.pdf|DIY Techniques, Mark O'Brien]]
+*[[Media:Patrick_spider_imaging.pdf|Imaging spiders for the South Dakota Spider Survey: challenges and frsutrations, Brian Patrick]]
+*[[Media:Scanning_Microscope_Slides_Oboyski.pdf|Scanning Microscope Slides, Peter Oboyski]]
+*[[Media:Naturalis_microscopic_slides.pdf|Slide imaging at Naturalis Biodiversity Center, Joost van Leusen]]
+*[[Media:Hand_sanitizer_Droege.pdf|Macro photography in hand sanitizer, Sam Droege]]
+*[[Media:Final_Stephanie_Ware_02.pdf|Slide imaging at the Field Museum, Stephanie Ware]]
+*[[Media:IDIGBIO_WORKING.pdf|Wet Specimen Imaging at CAS: Going with the flow into the 21st Century, Vic Smith]]
+*[[Media:Brilmyer_idig_bio.pdf|Conceptualizing and implementing large-scale collection digitization, Gracen Brilmyer]]
+*[[Media:Hedin_iDigBio_presentation.pdf|Imaging alcohol-preserved Arachnids using a Visionary Digital System, Marshal Hedin]]
+*[[Media:Selden.pdf|Imaging techniques in the study of fossil spiders, Paul Selden]]
+*[[Media:Lightroom_presentation.pdf|Processing images with Lightroom, Rich Rabeler]]
+*[[Media:Imaging_Vic_Smith.pdf|Fluid-preserved imaging, Roy Larimer]]
+*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]
+== Workshop Recordings ==
+*[http://idigbio.adobeconnect.com/p38b8xvyben/ Day 1 AM Session 8:15am-10:30am]
+*[http://idigbio.adobeconnect.com/p7djloaq40w/ Day 1 AM Session 11am-12:30pm]
+*[http://idigbio.adobeconnect.com/p32zu1pozn8/ Day 1 PM Session 4:15pm- 5pm]
+*[http://idigbio.adobeconnect.com/p92ihei2kp4/ Day 2 AM Session 8:15am- 10:15am]
+*[http://idigbio.adobeconnect.com/p8fh0tconam/ Day 2 AM Session 10:30am- 12:15pm]
+*[http://idigbio.adobeconnect.com/p9bq9n3yadn/ Day 2 PM Lightroom Demo Session]
+*[http://idigbio.adobeconnect.com/p1zalz4mex3/ Day 2 PM O'Brien Demo Session]
+*[http://idigbio.adobeconnect.com/p4nctnt76u8/ Day 2 PM Closing Session 5pm- 5pm]
+==Images for Review==
+*[[Media:08-10-29_Erig_blaesa2_comp.jpg|Spider from Sandy Brantley 1]]
+*[[Media:Xy_cu_07-12-20_114944_R8_S4.jpg|Spider from Sandy Brantley 2]]
+==Documentation==
+*[http://essigdb.berkeley.edu/search_labels.html  Essig Museum of Entomology microscopic slide image database]. Search for "Aetheca" in the filename (as an example) and click on the filename link to see the image. Contributed by Pete Oboyski.]
+*[http://www.velehanden.nl/projecten/bekijk/details/project/nat_nbc Crowd Sourcing project for glass slides at Naturalis Biodiversity Center (Google Chrome translates the site nicely)]
+*[http://www.youtube.com/watch?v=S-_yvIsucOY How to Take High Resolution Macro photographs Using a Simple Studio Setup: Camera Equipment (Sam Droege)]
+*[http://www.youtube.com/watch?v=Bdmx_8zqvN4 Insect Photo Enhancement: Photoshop Tutorial (Sam Droege)]
+*[http://www.youtube.com/watch?v=izqFaia_8bU How to Preserve Insect Specimens in Hand Sanitizer....the Video (Sam Droege)]
+*[[Media:How_to_Take_MacroPhotographs_of_Insects_BIML_Lab2.pdf|Detailed Macrophotography of Insect Specimens: A Laboratory Setup (Alexander & Droege)]]
+*[https://www.idigbio.org/sites/default/files/Image%20File%20Format%20Recommendations%20and%20Standards.pdf iDigBio's Recommendations for the Acquisition, Processing, Storage, and Distribution of Digital Images]
+*[[Media:Leica_Imaging_Manual_July1_2013.pdf|LEICA APPLICATION SUITE V 4.2 IMAGING MANUAL The Field Museum of Natural History — Moreau Lab (www.moreaulab.org) for high-resolution specimen image stacking, Gracen Brilmyer]]
+*[[Media:Ant_Databasing_Protocols_August.pdf|Ant Databasing Project Protocols, Field Museum, Gracen Brilmyer ]]
+*[[Media:Paul_Selden_Protocol.pdf|Paul Selden's workflow (including hardware and software notes) for imaging fossil spiders]]
+==Workflow Documents==
+*[https://www.idigbio.org/content/workflow-modules-and-task-lists iDigBio community-generated modular workflows, including those for things in spirits in jars]
+==Interesting Sidelights==
+*[http://www.news.com.au/technology/sci-tech/at-this-scale-no-insect-is-ugly-up-close-and-personal-with-creepy-crawlies/story-fn5fsgyc-1226719021395 Recent news article from Australia highlighting Sam Droege and his images]
+*[http://www.news.com.au/technology/gallery-e6frflwi-1226719020089?page=2 A few of Sam Droege's insect images]
+*[http://www.flickr.com/photos/usgsbiml/ Sam Droege's Flickr page]
+*[[Dried Insect Digitization Workshop|Pinned insect digitization workshop, Chicago, Spring 2013]]
+*[[Wet Collections Digitization Workshop|Wet collections digitization wiki, U. Kansas, March 2013]]
+*[http://www.microscopyu.com/tutorials/java/digitalimaging/pixelcalculator/ Nikon's Digital Camera Resolution Requirements for Optical Microscopy]
+*[http://www.hamamatsu.com/jp/en/product/new/C12000/index.html NanoZoomer from Hamamatsu]
+*[http://www.irfanview.com/ IrfanView software for file re-naming]
+*[http://www.barcode-labels.com/ Potential source for bar codes suggested by Mariel Campbell]
+*[http://www.gaylord.com/adblock.asp?abid=718&search_by=desc&search_for=selfadhesive%20labels&mpc=WW Potential source for labels suggested by Joost Leusen]