Data Ingestion Report

This is the progress of the ingestion of data into iDigBio's portal, a quick view of ongoing process and the results. The most updated counts on ingested datasets can be found at: http://www.idigbio.org/portal/publishers New datasets that have been ingested since Jan 2014:

• OSU (~484568 specimens, Submitted: Jan/10/2014, Accepted: --/--/----, Ingested: Feb/24/2014)
• CCBER / VertNet (15,637 (herps), 1,948 (mammals), 7,000 (birds) specimens. Submitted: Feb/10/2014, Accepted: Feb/12/2014, Ingested: Feb/24/2014)
• CRCM / VertNet (29,458 vertebrate specimens. Submitted: Feb/10/2014-, Accepted: Feb/12/2014, Ingested: Feb/24/2014)
• WFVZ / VertNet (225,226 bird specimens. Submitted: Feb/10/2014, Accepted: Feb/12/2014, Ingested: Feb/24/2014)
• TNHC / VertNet (85,519 (herps), 54,244 (fish) specimens Submitted: Feb/10/2014, Accepted: Feb/12/2014, Ingested: Feb/24/2014)

Data Status in the various queues

In the ingesting queue:

• UCONN (168,522 herbarium specimens + images. Submitted: Feb/20/2014, Accepted: Feb/26/2014)
• Appalachian State University (BOON,SERNEC), Zack Murrell, Herrick Brown (131,626 herbarium specimens. Submitted: ---/--/2014, Accepted: ---/--/2014, Ingested: ---/--/2014),

In the mobilizing queue:

• KU Entomology,
• NEVP TCN,
• Yale Peabody,
• FSU,
• Morphbank FSU, and Morphbank Tall Timbers Research Station (TTRS),
• Archbold Herbarium, will come via NANSH
• Michigan State University (MSC), Alan Prather, Alan Fryday,
• CalBug,
• Sam Noble Oklahoma Museum of Natural, S. Paul King, University of Oklahoma, Mike Mares,

In the negotiating queue:

• FLAS herbarium,
• Mississippi Herbarium Consortium,
• Bishop Botany,
• Pacific Northwest Herbaria Consortium,
• Botanical Research Institute of Texas (BRIT), Amanda Neill,
• North Carolina State Museum of Natural History, Gabriela Hogue,
• TTD: ILLS, Dmitry Dmitriev,

In the pre-negotiating queue:

• Florida State Collection of Arthropods, DPI, Lepidoptera, Jim Hayden,
• FLMNH Paleo,
• AMNH (mammals, fishes & birds),
• Hank Bart/Nelson Rios at FishNet2,
• University of Texas, Austin (TEX), Tom Wendt,
• Missouri Botanical Garden (MO), Chuck Miller,
• NM Museum of Southwestern Biology, Joe Cook,
• Field Museum (FMNH/F), Sharon Grant,
• KU Fish & Herps, Andy Bentley,
• LACM Luis Chappe,

Note: Redmine links above require a logid
Last updated: March/5/2014

XML File For Providers

Data mobilizers are to fill in this XML table for all providers when submitting a dataset, unless that data are available to the cyberinfrastructure team via an IPT eml.xml file.

• sample: metadata.xml

Post the completed custom EML files here:

• on Redmine

Additional Statistics at Various Stages of Ingestion

• Provided = data counts of specimens and media in datasets as given by the provider
• Ingested = data counts of specimens and media per dataset that can be found in the iDigBio API
• Indexed = data counts of specimens and media per dataset that can be found through searching

Cells with pink or yellow show discrepancies in count as data progress in the pipeline (more or less than the previous stage respectively). These colors are not cause for alarm, and are better explained as follows:

• Pink cases in the "Specimen Ingested" or "Media Ingested" columns indicate the recordsets from which the provider has deleted records. Since iDigBio never deletes any record provided and all the history is preserved, iDigBio will have more records than currently published by the provider.
• Yellow cases in the "Specimen Ingested" or "Media Ingested" columns indicate:
  • recordsets that have new records since last iDigBio's harvest and that will be ingested during the next harvest scheduled to start weekly on Wednesdays; or,
  • recordsets with duplicate occurrenceIDs (an example in the CRCM vertebrate - VertNet, which presents 3 duplicates; thus 6 records that were not ingested).
• Yellow cases in the "Specimens Indexed" indicate cases where the dataset is currently in the process of ingestion (i.e., in the API, but not yet searchable in the portal).

The full table can be also downloaded as an Excel file. The table presents numbers as of March 04, 2014.

RecordsetGUID	Source	Code	Specimens Provided	Media Provided	Specimens Ingested	Media Ingested	Specimens Indexed	Media Indexed
f83517ea-7b9f-443d-9371-d11a05ebc0a7	SCAN	UNL-SCARAB	0	0	0	0	0	0
9ace4c05-d930-45c7-8d2d-0cadff1ea32b	SCAN	MCZ	9733	0	9733	0	9733	0
7fcdca8e-7469-480c-8516-cce4e24c37c9	SCAN	UNM-MSBA	25705	0	25705	0	25705	0
ff111763-e72d-4f24-8914-b5b2dd94908c	SCAN	NMSU-NMSU	38225	0	38250	0	38250	0
31c140bc-e6f1-4acc-beaf-b825cf288ad9	SCAN	UA-UAIC	24774	13008	24774	22864	24774	22864
ab4b6a2b-a90a-44ce-95a1-2c44c911fcc6	SCAN	ASU	37444	640	37444	640	37444	640
89eb1ad0-ae60-4e8a-bf34-a53d0423bc80	SCAN	NAU-NPS	7101	6	12797	6	12797	6
5e893602-84ca-4c8c-bac1-99111c777582	SCAN	TTU-TTU-Z	26093	23227	26093	23227	26093	23227
92dd8c8e-c048-4f0a-9b5d-2ee627d2f553	SCAN	CSU-CSUC	33338	9	33339	9	33339	9
9bd4ff72-1cb2-431f-bf7b-b5d47e08cc02	SCAN	UDAF-UDAFE	187	0	187	0	187	0
d767f759-af64-4464-8614-c77ca44cad8d	SCAN	Kutztown-GPSC	51	0	51	0	51	0
82541f90-fe8e-4d66-84d8-4fe515dc5533	SCAN	UCB-UCMC	40131	0	40131	0	40131	0
a3b77120-3770-46dd-ba47-6941eff848b3	SCAN	TAMU-TAMUIC	68237	0	68237	0	68237	0
054f69cb-07c9-458e-bc91-3800c5823e70	SCAN	MCZ-temp	102707	0	134245	0	134245	0
5aac25d2-bcfb-4084-a700-584311ea539d	SCAN	DMNS-DMNS	41124	233	41124	233	41124	233
6539877e-82dc-485c-ad3d-038f383d5431	SCAN	UMNH-ENT	6216	0	6216	0	6216	0
69037495-438d-4dba-bf0f-4878073766f1	SCAN	NAUF	25695	751	25834	751	25834	751
da1ef9b1-761b-4bc3-8ac0-b9a109101f5f	OSU	osum-amphibians	4972	0	4972	0	4972	0
84006c59-fead-4b84-b3b5-cedf28f67ea9	OSU	ucfc	11649	0	11649	0	11649	0
b5d8168e-c310-4870-aa88-eeb3c25256fd	OSU	osum-mammals	6470	0	6470	0	6470	0
87fee729-2a4e-4d23-ad8a-5e03e1ab7c1a	OSU	osum-fish	93515	0	93515	0	93515	0
fc628e53-5fdf-4436-9782-bf637d812b48	OSU	osuc	282491	1701	282491	0	282491	0
3b9ecf1e-3c04-4d8b-84cd-9ae48e70e13a	OSU	osum-birds	25747	0	25747	0	25747	0
efc8b829-65b0-4fff-b6b2-f1148c68f80d	OSU	osum-reptiles	2387	0	2387	0	2387	0
95773ebb-2f5f-43f0-a652-bfd8d5f4707a	OSU	osal	57337	0	57337	0	57337	0
215eeaf0-0a88-409e-a75d-aec98b7c41eb	Intermountain	UTC	126416	20983	126586	20984	126586	20984
5835f642-2560-4e3e-9c25-741a12cc3fe8	Intermountain	KHD	54816	52079	55171	52196	55171	52196
b12b08da-3d05-4406-a051-0139a33ecf35	Intermountain	ENLC	2087	0	2087	0	2087	0
6bb853ab-e8ea-43b1-bd83-47318fc4c345	FLMNH	invertebratezoology	535831	0	535953	0	535953	0
48e1b8c1-91aa-4b87-8ca0-de1f81232eaf	FLMNH	mammals	32602	0	32610	0	32609	0
bd7cfd55-bf55-46fc-878d-e6e11f574ccd	FLMNH	herpetology	168420	0	168422	0	168395	0
c38b867b-05f3-4733-802e-d8d2d3324f84	FLMNH	ichthyology	218413	0	218415	0	217245	0
0072bf11-a354-4998-8730-c0cb4cfc9517	LBCC-B	USF	2300	2335	2300	2335	0	0
00d9fcc1-c8e2-4ef6-be64-9994ca6a32c3	LBCC-B	NY	368593	24609	368593	24611	358288	14308
0dd7c8dd-412c-4a13-a1d3-47e1e1af5455	LBCC-B	F	92247	42763	92247	42764	82708	32672
181352ea-3598-4f32-b919-c8f6097f4c65	LBCC-B	MSC	22242	22241	22242	22242	22242	22242
1da2a87d-4fc7-4233-b127-59cb8d1ca5ee	LBCC-B	NHA	1167	1167	1167	2334	1167	1167
2bbafa00-3162-4e8e-947c-64a13b8d3fef	LBCC-B	VSC	4069	4069	4069	4069	4069	4069
314f66a9-2b8f-4085-b10c-0f083ce2f1eb	LBCC-B	UWFP	304	307	304	307	0	0
333ac26a-30bc-4e0c-a6ef-c57a40f6bd99	LBCC-B	NCU	2391	2629	2391	2630	2391	2630
35c43eda-1f4a-4713-bb69-e3fbe1bf792f	LBCC-B	UC	95192	1	95192	1	95192	1
41350373-fc6f-4dd9-b908-27805fff9155	LBCC-B	SRP	817	800	817	800	668	790
4830ffb8-669a-4717-bec8-2f2374f52120	LBCC-B	DUKE	199210	20127	199210	20127	197883	20127
5a0d649f-a64f-4e20-a37c-2fe7f9e37bad	LBCC-B	Harvard University	5145	1	5145	1	5145	1
62254613-2696-4834-8c58-5c465f70df56	LBCC-B	WIS	30109	31086	30109	31086	0	0
6ac89a16-4604-4a78-9047-dcc57e5c0130	LBCC-B	MOR	0	0	0	0	0	0
77b762ba-7cda-4617-97d7-e78df7f6dfab	LBCC-B	BING	1061	3	1061	3	1061	3
7809d96b-7edf-4ef7-9f12-59967e9a01a6	LBCC-B	COLO	62082	64082	62095	64082	47618	48608
8445ab25-ff89-44b0-90f8-bf0790f50afc	LBCC-B	ALA	27222	0	27223	0	6418	0
8e5fffb5-0b22-472d-8386-de291d17d513	LBCC-B	LSU	3884	2915	3884	2915	3884	2915
9c963109-9898-4953-a351-d5ee36d6115b	LBCC-B	WVA	0	0	0	0	0	0
ab820732-0844-4323-ba14-c58c24f3fc7e	LBCC-B	MICH	87139	80427	87139	80427	39953	25475
abe3903e-ceba-4864-aa5d-bd985c70fa21	LBCC-B	CONN	2390	2389	2390	2819	430	430
b1c7a275-21f6-4b66-895d-d497359b34a1	LBCC-B	UTC	1528	8	1528	8	1412	8
b62cf6c0-e046-4c3f-9765-d0e046072b0f	LBCC-B	MAINE	0	0	0	0	0	0
b8972f6b-c67f-45c0-b348-954866e04a0f	LBCC-B	BRY	3704	3777	3704	7551	3703	3774
bbf5f8ed-f33f-40ba-9d0d-1c24dfec4193	LBCC-B	NEB	10709	13636	10709	13638	10709	13636
c3a7b339-122e-4fe9-8851-371b1fdf584e	LBCC-B	FTU	791	802	791	802	0	0
c5d42fed-eed0-4e14-9625-f8a9c0ff6bb1	LBCC-B	NEBK	3827	4200	3827	4200	3827	4200
ccba425a-25e0-4d94-8fde-3890be03ae1b	LBCC-B	EVE	304	0	304	0	304	0
cd177f63-761b-44f6-866e-ee19d2ac134e	LBCC-B	BRIT	11494	11488	11494	11489	1255	1250
ce02a047-625d-4017-aeef-2c34e53824c8	LBCC-B	OS	0	0	0	0	0	0
d6c6e57a-4ccb-4707-b87d-c91d01d6aa42	LBCC-B	CHRB	6833	6829	6833	6829	6833	6829
e0e37702-32af-405b-b652-ee54b5bb94e2	LBCC-B	ILL	25287	30591	25287	30591	24439	29444
e39f6dee-f2cf-4eff-afc9-4600cafe660c	LBCC-B	PH	15568	3130	15568	3130	12463	0
e812c193-89b5-4da8-980d-e759ac50ffba	LBCC-B	MO	273114	44296	273114	44296	250667	21834
e881a3e2-f7ba-43c8-ae9a-11fcbfd741bb	LBCC-B	TENN	51279	47918	51279	47928	29279	25913
f1a78c0f-449c-45fa-9472-0b92cc2a58da	LBCC-B	WTU	74141	23082	74141	23082	74141	23082
f33e9494-7b3c-4ac6-a735-59693b5a9638	LBCC-B	VT	16969	16966	17727	16966	17533	16773
f3a5ec1a-49dd-4a52-8bd8-67cacae7a7ac	LBCC-B	FTG	425	426	425	426	0	0
f4214a7a-6793-48e0-ac41-9baff83096d3	LBCC-B	ILLS	2743	0	2743	0	2743	0
fccc3c1d-d9df-4ffd-b7e1-1b9eb11f95b1	LBCC-B	FLAS	22636	23576	22636	23612	22308	23247
5eb57cb9-a6e8-4f84-abde-41a6bfd2080b	iDigBio	TTD_TCN_idigbio	373710	0	373710	0	373710	0
db4bb0df-8539-4617-ab5f-eb118aa3126b	iDigBio	ABS_iDigBio	5666	0	5666	0	5666	0
d70edfe9-c358-4bf3-96d2-22fddc702994	iDigBio	TTRS_Birds	3945	0	3945	0	3945	0
ef30a918-b583-41f1-9ac4-4a37591b515a	iDigBio	TTRS_Lepidoptera	1376	0	1376	0	1376	0
35ff9d4c-829f-42c9-b8ab-8dbe1a69e0d7	iDigBio	idigbio-invertnet	0	14394	0	14207	0	14207
cc75bd05-251f-4cbb-afed-100cac9d7aa0	iDigBio	INHSFish	105742	0	105742	0	105742	0
d78c4f23-f6c4-42cd-8ddf-d5a98c351545	iDigBio	TTRS_Mammals	968	0	968	0	968	0
191206d2-a389-471c-9f9d-c0b8b00c35f8	VertNet	ccber_birds	7000	0	7000	0	7000	0
5ace330b-5888-4a46-a5ac-e428535ed4f3	VertNet	wfvz_birds	225226	0	225226	0	225226	0
311c3a01-c824-4a85-8771-fcc3f353619b	VertNet	crcm_verts	29458	0	29452	0	29452	0
f56d3b76-c8c7-4280-969a-65fce63cff0b	VertNet	ccber_herps	15637	0	15637	0	15637	0
5f105976-5a5f-4a72-850d-2059a80f7c10	VertNet	tnhc_fish	54244	0	54244	0	54244	0
0b065abc-f9a3-400f-a36a-e3bfc4effc82	VertNet	ccber_mammals	1948	0	1948	0	1948	0
e3c3f4db-e4f3-4198-9c43-4d518d5893a3	VertNet	tnhc_herps	85519	0	85519	0	85519	0
51b958bb-9d5f-48d7-9a97-e372c0c747c3	CalAcademy	herp	308338	0	308338	0	308338	0
14a8f79f-eab7-48da-ad50-bda142703820	CalAcademy	mam	30084	0	30082	0	30050	0
ded380b5-1ba2-4089-8e0c-0aa1b4140785	CalAcademy	antweb	375851	0	375851	0	375851	0
beb74dc2-22ea-49e4-b1e3-bedb8e06e8f2	CalAcademy	ich	200459	0	200456	0	200353	0
87c45c90-ba1d-409e-a9d7-9baf5a5cbb1c	CalAcademy	ent	177466	0	177466	0	177466	0
bd61c458-b865-4b05-9f1f-735c49066e55	CalAcademy	invz	149582	0	149582	0	149582	0
26f7cbde-fbcb-4500-80a9-a99daa0ead9d	CalAcademy	botany	386189	0	383937	0	383529	0
b8cbed64-5126-46bd-97aa-43627743aba7	CalAcademy	orn	97139	0	97114	0	97114	0
7450a9e3-ef95-4f9e-8260-09b498d2c5e6	Harvard	harvard_university_herbaria	363245	0	361019	0	359270	0
40250f4d-7aa6-4fcc-ac38-2868fa4846bd	SEINET	ASU-Plants	192905	93680	192954	93820	192954	93820
b531ea59-025d-4c29-9d23-99ae75bcd55f	SEINET	ASC	78473	5	78473	5	78473	5
c569e530-7322-40b8-9b66-1e0ed96fefcb	SEINET	DES	72484	66298	72590	66410	72590	66410
e70af26a-fb9e-43ab-96a0-d62a2df37e6d	UCONN	idigbio1	168522	165817	168440	0	0	0
271a9ce9-c6d3-4b63-a722-cb0adc48863f	MCZ	mczbase	1694992	0	1706431	0	1704622	0
95ecb448-3c1f-4145-8565-4f6d51beb62c	KU	kubi_invp	78547	0	78547	0	78547	0
f6298100-86ae-458f-9fb1-bbb3bb325422	MaCC	MIN	13558	4	13558	4	13557	2
46374ee7-7c70-48d8-bf16-2e6c1626565e	MaCC	SFSU	17808	9378	17808	9378	17808	9378
10a02814-9469-42fd-b074-22ca6c8271c7	MaCC	F	44189	0	44189	0	44189	0
3feab0ae-cfc3-40fb-b681-018c410f1996	MaCC	MICH	138626	78687	138635	78690	134343	70609
1f2b44b8-8556-4d6e-8247-4611689551cf	MaCC	FLAS	12408	12782	13677	12835	13676	12740
37d4d085-d8be-4826-9bc4-c6a36557fa70	MaCC	OSC	36465	0	36465	0	36465	0
7ad07cff-f782-4ddf-b780-3a757cdb77e0	MaCC	LSUM	8455	4965	8455	4967	8035	4967
645bcd10-a74f-4207-a375-0254b954b7ad	MaCC	NCU	6729	6961	6729	6961	6729	6961
02fceae6-c71c-4db9-8b2f-e235ced6624a	MaCC	UC	23236	18602	25379	18604	23879	16063
7559ca29-1d2f-4a64-993f-41939ee40947	MaCC	RET	0	0	0	0	0	0
cf641fbf-fa31-481a-993b-9204f2ee1884	MaCC	ISC	9673	6	9673	6	9673	6
91a0a18a-3196-4f87-87b6-02c7f8a12996	MaCC	NCSLG	4862	0	4862	0	4862	0
beecd160-a96c-46fc-bdce-7dcb7024d473	MaCC	WTU	44071	9094	44071	9094	44071	9094
0c15e83e-79ee-4ee3-86e3-e5f98a51dc11	MaCC	UTC	2947	3	2947	3	2947	3
04d9b721-259c-4d6b-b48f-2e23edf66c9f	MaCC	TENN	63961	8191	63961	8191	63783	7624
15aa4812-aad2-4b26-a1d8-d4f8d79e6163	MaCC	ARIZ	8953	0	8953	0	8953	0
fdf7bb59-aad2-4f10-879f-6c0e7d3baa64	MaCC	DBG	17126	27130	17127	27131	17127	27131
ec4289d8-1114-43b9-9f04-ad809aa1dbe3	MaCC	NY	151276	37355	151278	37355	151278	37355
e7ac8c4a-64bd-491b-b764-232de9b4bfe5	MaCC	ILLS-ILLS	46916	0	46916	0	46916	0
1eca069b-09e0-406d-9625-cb9c52e1e5cc	MaCC	DUKE	10414	2129	10414	2129	10364	2129
7340c0df-8829-4197-9dc7-0328b8e7f5dd	MaCC	MONTU	1415	1630	1415	3260	1415	3260
79be41bc-8142-485a-9d57-d6195f9a7c81	MaCC	CSU	1644	0	1644	0	1605	0
91c5eec8-0cdc-4be2-9a99-a15ae5ec3edc	MaCC	CUP	65209	2	65209	4	65209	4
b000920c-6f7d-49d3-9d0f-2bb630d2e01a	MaCC	FH	21278	8712	21278	8712	21275	8045
b7349341-c8e2-4628-be5f-77600ba730fa	MaCC	DEWV	10582	0	10582	0	10582	0
e95396c4-1cac-4c9b-b461-5f21cd978fc6	MaCC	BPI	771095	0	771095	0	771095	0
ec248223-f277-4c02-b1fa-60056b5a689a	MaCC	VPI	5344	44	5344	44	5335	44
ff0d1543-247c-4039-a8ff-cf4fc224c449	MaCC	HCOA	0	0	0	0	0	0
17cea35c-721f-4d9b-b67f-d29250064d25	LBCC-L	SBBG	33009	0	33009	0	33009	0
a6743a43-b86a-4265-9521-fad3a24461a6	LBCC-L	OMA	19034	0	19034	0	19034	0
29d217e3-754b-4a72-9e57-5cd05312e7c0	LBCC-L	NY	121422	69645	121422	69645	121422	69645
7c927849-94ed-4034-90e9-af34ac0cb47c	LBCC-L	ASU	114414	776	114473	776	114473	776
1c8ec291-8067-4b48-848b-410c2c768420	LBCC-L	USF	0	0	0	0	0	0
dfd53a42-8f63-4040-93a5-3f1347ce7686	LBCC-L	TLE	0	0	0	0	0	0
6aca6f67-a2e9-440d-a503-9501db6e6f36	LBCC-L	NEBK	198	397	198	397	198	397
821c1855-6817-40ee-8732-7f472d238513	LBCC-L	ALA	3565	0	3565	0	3565	0
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c481fbc6-4bd7-4c50-8537-ba1993d4eb88	LBCC-L	F	35020	0	35020	0	35020	0
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			11,426,042	1,585,805	11,475,393	1,435,480	11,096,206	1,230,854