iDigBio

ADBC Summit 2019: Difference between revisions

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ADBC Summit 2019 (view source)

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Wireless access for onsite participants is available through both the Hilton (more details provided later) and the University of Florida (https://getonline.ufl.edu/).
Wireless access for onsite participants is available through both the Hilton (more details provided later) and the University of Florida (https://getonline.ufl.edu/).


== Remote Access ==
== Attendee Information ==


To the extent possible, the Summit sessions will be remotely broadcast and recorded (more details provided later).
[https://www.idigbio.org/wiki/images/3/39/2019SummitAttendees.pdf Basic Attendee List pdf] <br>
[https://docs.google.com/spreadsheets/d/1PSZjvSn2IjK65epcad-BotZ12XgGldRyCFSJd_iskw0/edit?usp=sharing Comprehensive Attendee List Google sheet - Please edit as needed]


= AGENDA =
= AGENDA =
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| style="background-color: lightgray;" | '''9:00-10:30'''
| style="background-color: lightgray;" | '''9:00-10:30'''
| style="background-color: lightblue;" | '''Orientation to ADBC'''<br>
| style="background-color: lightblue;" | '''[[Media:ADBC_Orientation_2019.pdf | Orientation to ADBC]]'''<br>
Join us for an orientation session presented by the iDigBio core team. Everyone is welcome! Come to learn, to refresh, and to meet your fellow digitizers! We will cover topics including:
Join us for an orientation session presented by the iDigBio core team. Everyone is welcome! Come to learn, to refresh, and to meet your fellow digitizers! We will cover topics including:
* What ADBC and iDigBio are about, the acronyms, the scope
* What ADBC and iDigBio are about, the acronyms, the scope
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| style="background-color: lightgray;" | '''11:00-12:00'''
| style="background-color: lightgray;" | '''11:00-12:00'''
| style="background-color: lightblue;" | '''Orientation to ADBC (continued)'''<br>
| style="background-color: lightblue;" | '''[[Media:ADBC_Orientation_2019.pdf | Orientation to ADBC]] (continued)'''<br>
* Ways to interact with us - listservs, meet the staff
* Ways to interact with us - listservs, meet the staff
* TCN responsibilities
* TCN responsibilities
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 9:30-9:45
| 9:30-9:45
| Conference Logistics
| [[Media:Logistics_Day1_Summit_2019.pdf | Conference Logistics]]
| David Jennings
| David Jennings
|}
|}
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 9:45-10:00
| 9:45-10:00
| New TCN Intro TPT
| [[Media:TPT_2019.pdf|New TCN Intro TPT]]
| Jen Zaspel
| Jen Zaspel
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 10:00-10:15
| 10:00-10:15
| New TCN Intro TORCH
| [[Media:TORCH_2019.pdf|New TCN Intro TORCH]]
| Peter Fritsch
| Peter Fritsch
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 10:15-10:30
| 10:15-10:30
| New TCN Intro PILSBRY
| [[Media:PILS_2019.pdf|New TCN Intro PILSBRY]]
| Norine Yeung
| Norine Yeung
|}
|}
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 11:00-11:15
| 11:00-11:15
| California Phenology
| [[Media:CAP_ADBCSummit2019.pdf|California Phenology]]
| Jenn Yost and Katie Pearson
| Jenn Yost and Katie Pearson
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 11:15-11:25
| 11:15-11:25
| Cretaceous World
| [[Media:CretaceousWorld_2019.pdf|Cretaceous World]]
|Bruce Lieberman
|Bruce Lieberman
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 11:25-11:40
| 11:25-11:40
| Endless Forms
| [[Media:EndlessForms_2019.pdf|Endless Forms]]
| Matthew Pace
| Matthew Pace
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 11:40-11:50
| 11:40-11:50
| EPICC
| [[Media:EPICC_2019.pdf|EPICC]]
| Ashley Dineen
| Ashley Dineen
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 11:50-12:00
| 11:50-12:00
| InvertEBase
| [[Media:InvertEBase_2019.pdf|InvertEBase]]
| Petra Sierwald
| Petra Sierwald
|}
|}
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 1:00-1:15
| 1:00-1:15
| LepNet/SCAN
| [[Media:SCAN_LepNet_2019.pdf|LepNet/SCAN]]
| Neil Cobb
| Neil Cobb
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 1:15-1:25
| 1:15-1:25
| Microfungi
| [[Media:MiCC_2019.pdf|Microfungi]]
| Andrew Miller
| Andrew Miller
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 1:25-1:35
| 1:25-1:35
| Mid-Atlantic Megalopolis
| [[Media:MAM_2019.pdf|Mid-Atlantic Megalopolis]]
| Cindy Skema
| Cindy Skema
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 1:35-1:45
| 1:35-1:45
| oVert
| [[Media:OVert_2019.pdf|oVert]]
| David Blackburn
| David Blackburn
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 1:45-1:55
| 1:45-1:55
| Pteridological
| [[Media:Pteridophyte_2019.pdf|Pteridological]]
| Cindy Looy
| Cindy Looy
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 1:55-2:05
| 1:55-2:05
| SERNEC
| [[Media:SERNEC_2019.pdf|SERNEC]]
| Zack Murrell
| Zack Murrell
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 2:05-2:15
| 2:05-2:15
| SoRo
| [[Media:SoRo_2019.pdf|SoRo]]
| J Ryan Allen
| J Ryan Allen
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 2:15-2:20
| 2:15-2:20
|LBCC  
| [[Media:LBCC_2019.pdf|LBCC]]
|Thomas Nash  
| Thomas Nash  
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 2:20-2:25
| 2:20-2:25
|Great Lakes Invasives  
| [[Media:GLI_2019.pdf|Great Lakes Invasives]]
|Ken Cameron
| Ken Cameron
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 2:25-2:30
| 2:25-2:30
|Tri-trophic
| [[Media:TriTrophic_2019.pdf|Tri-trophic]]
|Christine Johnson
| Christine Johnson
|}
|}
| style="background-color: black;" | Not available
| style="background-color: black;" | Not available
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| '''Panel Discussion with TCNs '''<br>
| '''Panel Discussion with TCNs '''<br>
This is a panel discussion with all TCN members in attendance, old and new. This session is intended to facilitate and propagate knowledge transfer, lessons learned, etc. throughout the ADBC program.
This is a panel discussion with all TCN members in attendance, old and new. This session is intended to facilitate and propagate knowledge transfer, lessons learned, etc. throughout the ADBC program.<br><br>[https://docs.google.com/document/d/1kmU2eMxXWJTj3JPnLDzjw99cfXslxh3RWhDs1KeolBM/edit?usp=sharing Discussion Notes]
| Barbara Thiers
| Barbara Thiers
|}
|}
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|'''Meeting the Needs of the Research Community'''<br>''Pamela S. Soltis, University of Florida <br>Robert P. Guralnick, University of Florida''<br><br>Are you trying to start a research project using iDigBio and/or other digitized specimen data but having trouble?  Or do you have a new idea about data use and would like to see ways to implement it?  Join our discussion about how iDigBio can better meet the needs of the research community now and in the future. <br><br>[https://docs.google.com/document/d/193FqhOs08MJ05nBhmBsXZzGLceLbM404agwnpudECnw/edit?usp=sharing Discussion Notes]
|'''Meeting the Needs of the Research Community'''<br>''Pamela S. Soltis, University of Florida <br>Robert P. Guralnick, University of Florida''<br><br>Are you trying to start a research project using iDigBio and/or other digitized specimen data but having trouble?  Or do you have a new idea about data use and would like to see ways to implement it?  Join our discussion about how iDigBio can better meet the needs of the research community now and in the future. <br><br>[https://docs.google.com/document/d/193FqhOs08MJ05nBhmBsXZzGLceLbM404agwnpudECnw/edit?usp=sharing Discussion Notes]
| style="background-color: black;" | Not available
| style="background-color: black;" | Not available
| '''R and the iDigBio API: Enabling Exploration and Discovery'''<br>''Ronald Canepa, ACIS Lab, University of Florida <br>Erica Krimmel, Florida State University <br> Deb Paul, Florida State University''<br><br>APIs and their use: a non-technical overview of the iDigBio Application Programming Interface (APIs) and example use cases for both data providers and downstream data consumers. <br><br>[https://docs.google.com/document/d/1GN3nUBEmU91UnPPx5koT6EimfhhPx20q9Z8qxk0ciF4/edit?usp=sharing Discussion Notes]
| '''[[Media:R_and_the_iDigBio_API_Enabling_Exploration_and_Discovery.pdf | R and the iDigBio API: Enabling Exploration and Discovery]]'''<br>''Ronald Canepa, ACIS Lab, University of Florida <br>Erica Krimmel, Florida State University <br> Deb Paul, Florida State University''<br><br>APIs and their use: a non-technical overview of the iDigBio Application Programming Interface (APIs) and example use cases for both data providers and downstream data consumers. <br><br>[https://docs.google.com/document/d/1GN3nUBEmU91UnPPx5koT6EimfhhPx20q9Z8qxk0ciF4/edit?usp=sharing Discussion Notes] <br><br>[https://github.com/roncanepa/idigbio-results-in-national-parks GitHub - Example #1] <br><br>[https://github.com/ekrimmel/idigbio-api-dq-geo GitHub - Example #2]
| '''Thrills and spills: sharing experiences, insights, and products on education, outreach, diversity & inclusion'''<br> ''Molly Phillips, iDigBio, University of Florida''<br><br>This session will include a series of 5-minute lightning presentations from TCN representatives on successes (thrills) and lessons learned (spills) relating to education, outreach, diversity, and inclusion (EODI) initiatives followed by a Q&A/discussion. The goals of this session are to raise awareness about all of the amazing EODI activities and products that have stemmed from the ADBC program and to hopefully encourage cross-pollination of ideas and collaboration among the projects. <br><br>[https://docs.google.com/document/d/1vvMw2_V5s4uIsDzos9eu2YYJnWPi28lOSY20JTM6aUw/edit?usp=sharing Discussion Notes]<br><br>
| '''[[Media:EODISummit2019.pdf | Thrills and spills: sharing experiences, insights, and products on education, outreach, diversity & inclusion]]'''<br> ''Molly Phillips, iDigBio, University of Florida''<br><br>This session will include a series of 5-minute lightning presentations from TCN representatives on successes (thrills) and lessons learned (spills) relating to education, outreach, diversity, and inclusion (EODI) initiatives followed by a Q&A/discussion. The goals of this session are to raise awareness about all of the amazing EODI activities and products that have stemmed from the ADBC program and to hopefully encourage cross-pollination of ideas and collaboration among the projects. <br><br>[https://docs.google.com/document/d/1vvMw2_V5s4uIsDzos9eu2YYJnWPi28lOSY20JTM6aUw/edit?usp=sharing Discussion Notes]
'''Lightning talk slots are filling fast, so email Molly Phillips (mphillips@flmnh.ufl.edu) if you would like to present.'''
| '''Sharing biotic interactions found in collection data'''<br> ''Katja Seltmann, UC Santa Barbara, Cheadle Center for Biodiversity and Ecological Restoration''<br><br> During this session we will discuss how existing species interaction datasets are structured and how to increase our ability to generate aggregate datasets and examine networks of interactions. We will show examples of datasets shared through Global Biotic Interactions (GloBI - https://www.globalbioticinteractions.org) and discuss ideas about how to share more biotic interaction data for research. <br><br>[https://docs.google.com/document/d/1HtmEEmli3NIf24mA1y-h1iwPmCSaCjtR7Hm2fvUKOeg/edit?usp=sharing Discussion Notes]
| '''Sharing biotic interactions found in collection data'''<br> ''Katja Seltmann, UC Santa Barbara, Cheadle Center for Biodiversity and Ecological Restoration''<br><br> During this session we will discuss how existing species interaction datasets are structured and how to increase our ability to generate aggregate datasets and examine networks of interactions. We will show examples of datasets shared through Global Biotic Interactions (GloBI - https://www.globalbioticinteractions.org) and discuss ideas about how to share more biotic interaction data for research. <br><br>[https://docs.google.com/document/d/1HtmEEmli3NIf24mA1y-h1iwPmCSaCjtR7Hm2fvUKOeg/edit?usp=sharing Discussion Notes]
| '''How to convince your institution to digitize its biodiversity collection'''<br> ''Eric Knox, Indiana University Herbarium'' <br><br> This session will briefly present the institutional funding strategy that was successfully used to curate and digitize a semi-orphaned collection of 161,000+ herbarium specimens at Indiana University. The critical point is that all discussion with administrators should be framed in terms of how you can help them with their collection, not the other way around. The ensuing discussion will address varied institutional settings and potential pitfalls to avoid. <br><br>[https://docs.google.com/document/d/1MhO-mXrpBgFcGa6jLFFRFQ5_MPTffnVTX31UsRhv9bY/edit?usp=sharing Discussion Notes]
| '''How to convince your institution to digitize its biodiversity collection'''<br> ''Eric Knox, Indiana University Herbarium'' <br><br> This session will briefly present the institutional funding strategy that was successfully used to curate and digitize a semi-orphaned collection of 161,000+ herbarium specimens at Indiana University. The critical point is that all discussion with administrators should be framed in terms of how you can help them with their collection, not the other way around. The ensuing discussion will address varied institutional settings and potential pitfalls to avoid. <br><br>[https://docs.google.com/document/d/1MhO-mXrpBgFcGa6jLFFRFQ5_MPTffnVTX31UsRhv9bY/edit?usp=sharing Discussion Notes]
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| style="background-color: lightgray;" | '''4:45-5:00'''
| style="background-color: lightgray;" | '''4:45-5:00'''
| style="background-color: lightgreen;" | '''Day 1 Wrap-Up'''&ensp;''David Jennings''
| style="background-color: lightgreen;" | '''[[Media:Wrap-up_Day1_Summit_2019.pdf | Day 1 Wrap-Up]]'''&ensp;''David Jennings''
| style="background-color: black;" | Not available
| style="background-color: black;" | Not available
|
|
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 7:15-7:30
| 7:15-7:30
| '''Inclusion begins with an Invitation and Growth Mindset''' ''by Brett Wood ''
| '''Inclusion begins with an Invitation and Growth Mindset''' ''by Brett Woods ''
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 7:30-9:00
| 7:30-9:00
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 8:30 - 8:45
| 8:30 - 8:45
| Conference Logistics
| [[Media:Logistics_Day2_Summit_2019.pdf | Conference Logistics]]
| David Jennings
| David Jennings
|}
|}
{| class="mw-collapsible wikitable"
{| class="mw-collapsible wikitable"
! colspan="3" | Theme TBD
! colspan="3" | Plenary
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| 8:45 - 9:10
| 8:45 - 9:10
| Natural History collections and Wikimedia projects :  Why Natural History collections should engage with Wikipedia, Wikicommons and Wikidata
| [https://www.idigbio.org/wiki/images/5/53/Leachman_Wikimedia.pdf Natural History collections and Wikimedia projects :  Why Natural History collections should engage with Wikipedia, Wikicommons and Wikidata]
| Siobhan Leachman; Citizen scientist, Wikimedian
| Siobhan Leachman; Citizen scientist, Wikimedian
|- style="vertical-align: top;"
|- style="vertical-align: top;"
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| 9:45 - 9:55
| 9:45 - 9:55
| Questions &amp; Answers
| Questions &amp; Answers
| &amp;
| &nbsp;
|}
|}
| style="background-color: black;" | Not available
| style="background-color: black;" | Not available
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|  
|  
| style="background-color: black;" | Not available
| style="background-color: black;" | Not available
|'''Consuming the iDigBio API in R'''<br>
|'''[[Media:Consuming_the_iDigBio_API_in_R.pdf | Consuming the iDigBio API in R]]'''<br>
''Ronald Canepa, ACIS Lab; University of Florida <br>Erica Krimmel, Florida State University <br> Deb Paul, Florida State University''<br><br>
''Ronald Canepa, ACIS Lab; University of Florida <br>Erica Krimmel, Florida State University <br> Deb Paul, Florida State University''<br><br>
Consuming the iDigBio API in R: a technical exploration of iDigBio’s API offerings, the R statistical language environment, and common useful methods and code libraries
Consuming the iDigBio API in R: a technical exploration of iDigBio’s API offerings, the R statistical language environment, and common useful methods and code libraries. <br><br>[https://docs.google.com/document/d/1Zpjnagft1Jvt3jxNFRmlWiSLEJqv7ru4MoQVj2yy6AY/edit?usp=sharing Discussion Notes] <br><br>[https://github.com/roncanepa/idigbio-results-in-national-parks GitHub - Example #1] <br><br>[https://github.com/ekrimmel/idigbio-api-dq-geo GitHub - Example #2]
|  '''Where on earth is it? Georeferencing'''<br>
|  '''Where on earth is it? Georeferencing'''<br>
''Petra Sierwald, Field Museum''<br><br>The Field Museum conducted a georeferencing trial using mostly pinned insects from North American localities- only land and freshwater. During this session, results will be reviewed (eg. what cleaning was necessary, unique localities, length of time for georeferencing, success rate, etc.) and opened for discussion.
''Petra Sierwald, Field Museum''<br><br>The Field Museum conducted a georeferencing trial using mostly pinned insects from North American localities- only land and freshwater. During this session, results will be reviewed (eg. what cleaning was necessary, unique localities, length of time for georeferencing, success rate, etc.) and opened for discussion. <br><br>[https://docs.google.com/document/d/1MD2qZz189tOA-m1EUUiIcZT5OIRFiCKghvEUwyRtaMM/edit?usp=sharing Discussion Notes]
| '''Strategic Planning for the Worldwide Engagement for Digitizing Biocollections (WeDigBio) Event'''<br> ''Austin Mast, Florida State University <br> Libby Ellwood, The La Brea Tar Pits and Museum'' <br><br> Join us to discuss a future where large-scale creation of research-ready collections data continues with carefully crafted evaluation mechanisms guiding the community towards increasing science inclusiveness and participant understanding and valuation of biodiversity, collections, and science.  A few 5-minute slots for those wishing to present their past WeDigBio innovations will be followed by a brief presentation of the strategic plan and a 30-minute discussion of it. Email Austin (amast@bio.fsu.edu) soon to get a 5-minute timeslot.
| '''Strategic Planning for the Worldwide Engagement for Digitizing Biocollections (WeDigBio) Event'''<br> ''Austin Mast, Florida State University <br> Libby Ellwood, The La Brea Tar Pits and Museum'' <br><br> Join us to discuss a future where large-scale creation of research-ready collections data continues with carefully crafted evaluation mechanisms guiding the community towards increasing science inclusiveness and participant understanding and valuation of biodiversity, collections, and science.  A few 5-minute slots for those wishing to present their past WeDigBio innovations will be followed by a brief presentation of the strategic plan and a 30-minute discussion of it. <br><br>[https://docs.google.com/document/d/1N38Xn6ETD-sSyLzKH38OH9yYGnP_7ybguo5ZFUsYu14/edit?usp=sharing Discussion Notes] <br><br>
| '''Specimen Digitization Workflow Optimization Tools'''<br>''Joey Shaw, University of Tennessee at Chattanooga <br> Caleb Powell and Dakila Ledesma, University of Tennessee at Chattanooga''<br><br> This session will introduce and demonstrate various workflow optimization tools developed during the digitization of Tennessee herbaria under the SERNEC TCN. This session will showcase tools developed for common image processing tasks, including: naming, color correcting, white balance, metadata application, distortion correction, as well as quality controls such as blur detection and image orientation.
| '''Specimen Digitization Workflow Optimization Tools'''<br>''Joey Shaw, University of Tennessee at Chattanooga <br> Caleb Powell and Dakila Ledesma, University of Tennessee at Chattanooga''<br><br> This session will introduce and demonstrate various workflow optimization tools developed during the digitization of Tennessee herbaria under the SERNEC TCN. This session will showcase tools developed for common image processing tasks, including: naming, color correcting, white balance, metadata application, distortion correction, as well as quality controls such as blur detection and image orientation. <br><br>[https://docs.google.com/document/d/1jmv3WdsW5wf0NjfI6Y5w8QHqX-8pIs_YxcUdFWSaPk4/edit?usp=sharing Discussion Notes]
| '''Biodiversity Summit 2020 Discussion''' <br> iDigBio is looking for help from the ADBC community to provide suggestions and input for the 2020 Biodiversity Summit in Alexandria, VA.
| '''Biodiversity Summit 2020 Discussion''' <br>''Jillian Goodwin, iDigBio, University of Florida''<br>''Gil Nelson, iDigBio, University of Florida''<br><br>iDigBio is looking for help from the ADBC community to provide suggestions and input for the 2020 Biodiversity Summit in Alexandria, VA. <br><br>[https://docs.google.com/document/d/1zMwsD4Gae8HDQ3POUEG-1WAeyezDeA9Spq3eTaKO3ZE/edit?usp=sharing Discussion Notes]
|- style="vertical-align: top;"
|- style="vertical-align: top;"
| style="background-color: lightgray;" | '''11:30 - 12:30'''
| style="background-color: lightgray;" | '''11:30 - 12:30'''
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|- style="vertical-align: top;"
|- style="vertical-align: top;"
| '''Q&A Session with NSF'''<br>
| '''Q&A Session with NSF'''<br>
This session will provide an opportunity for new and existing TCNs to discuss key tips for successful TCNs at each step from obtaining funding to their final report and continuing post-grant digitization with NSF officers, Roland and Reed.
This session will provide an opportunity for new and existing TCNs to discuss key tips for successful TCNs at each step from obtaining funding to their final report and continuing post-grant digitization with NSF officers, Roland and Reed. <br><br>[https://docs.google.com/document/d/1rLwbt1ZLTI7WuCfQlFo0YhGJ8IYmzqtUj04DyMwedjc/edit?usp=sharing Discussion Notes]
|Reed Beaman and Roland Roberts
|Reed Beaman and Roland Roberts
|}
|}
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