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ADBC Summit 2017: Difference between revisions
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= Summit Program = | = Summit Program = | ||
[[Media:Summit | [[Media:Summit VII Interactive Program.pdf|Interactive PDF Summit program]]. We will be distributing a hard copy of this [[Media:Summit2017condensedprogram.pdf|condensed program]] at the Summit. | ||
= Agenda = | = Agenda = | ||
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The UF Carpentries Club and iDigBio are offering a two day [https://idigbio.github.io/2017-10-30-iDigBio-Summit-UFII/ Data Carpentry Workshop] to help participants in the 2017 ADBC Summit and the UF community get started learning R and common data management tools such as the spreadsheets, OpenRefine, and SQL. Need to learn some programming for a class? Have data you're scared to work with in Excel? Want to collaborate effectively with your peers? We were there once too. Come start learning with us! Visit the workshop website to learn more: https://idigbio.github.io/2017-10-30-iDigBio-Summit-UFII/ <br> | The UF Carpentries Club and iDigBio are offering a two day [https://idigbio.github.io/2017-10-30-iDigBio-Summit-UFII/ Data Carpentry Workshop] to help participants in the 2017 ADBC Summit and the UF community get started learning R and common data management tools such as the spreadsheets, OpenRefine, and SQL. Need to learn some programming for a class? Have data you're scared to work with in Excel? Want to collaborate effectively with your peers? We were there once too. Come start learning with us! Visit the workshop website to learn more: https://idigbio.github.io/2017-10-30-iDigBio-Summit-UFII/ <br> | ||
<br> | <br> | ||
The workshop will be held at the UF Informatics Institute, which has generously volunteered space and resources for this workshop. iDigBio is providing staff support. All of the organizers, instructors, and helpers are volunteering their time to help ADBC, UF, and you! | The workshop will be held at the UF Informatics Institute, which has generously volunteered space and resources for this workshop. iDigBio is providing staff support. All of the organizers, instructors, and helpers are volunteering their time to help ADBC, UF, and you! | ||
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| [ | | '''[[Media:Summit_7_Orientation.pdf|Orientation - Welcome to ADBC]]''' by the iDigBio Core Team<br> | ||
Join us for an iDigBio and ADBC orientation session where we will present information-fit-for-use about the following: | Join us for an iDigBio and ADBC orientation session where we will present information-fit-for-use about the following: | ||
# What ADBC and iDigBio are about, the acronyms, the scope | # What ADBC and iDigBio are about, the acronyms, the scope | ||
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| 1:15-2:30 | | 1:15-2:30 | ||
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| '''Group Discussion: Data Integration, Attribution and Interoperability''' (Andy Bentley | | '''Group Discussion: [[Media:Bentley_Data_integration_and_attribution.pdf|Data Integration, Attribution and Interoperability]]''' (Andy Bentley)<br> | ||
Collections, aggregators, data re-packagers, publishers, researchers, and external user groups form a complex web of data connections and pipelines. This forms the natural history infrastructure essential for collections use by an ever increasing and diverse external user community. We have made great strides in developing the individual actors within this system and we are now well poised to utilize these capabilities to address big picture questions. We need to continue work on the individual aspects, but the focus now needs to be on integration of the functionality provided by the actors involved in the pipeline to facilitate the transfer of data between them with as few human interventions as possible. In order for the system to function efficiently and to the benefit of all parties, information, data, and resources need not only to be integrated efficiently but flow in the reverse direction (attribution) to facilitate collections advocacy and sustainability. For instance, there are benefits to collections from inclusion into aggregators and subsequent use by researchers and publishers that are not being realized. The Biodiversity Collections Network (BCoN) is planning a program of workshops in conjunction with other groups to perform a needs assessment to identify gaps and problems in the data pipeline and explore future steps in coordinating efforts, providing solutions and standardizing tools and methods. This talk will explore this landscape and highlight BCoN’s efforts in this regard while soliciting participation from actors in the pipeline and the community at large.<br><br> | Collections, aggregators, data re-packagers, publishers, researchers, and external user groups form a complex web of data connections and pipelines. This forms the natural history infrastructure essential for collections use by an ever increasing and diverse external user community. We have made great strides in developing the individual actors within this system and we are now well poised to utilize these capabilities to address big picture questions. We need to continue work on the individual aspects, but the focus now needs to be on integration of the functionality provided by the actors involved in the pipeline to facilitate the transfer of data between them with as few human interventions as possible. In order for the system to function efficiently and to the benefit of all parties, information, data, and resources need not only to be integrated efficiently but flow in the reverse direction (attribution) to facilitate collections advocacy and sustainability. For instance, there are benefits to collections from inclusion into aggregators and subsequent use by researchers and publishers that are not being realized. The Biodiversity Collections Network (BCoN) is planning a program of workshops in conjunction with other groups to perform a needs assessment to identify gaps and problems in the data pipeline and explore future steps in coordinating efforts, providing solutions and standardizing tools and methods. This talk will explore this landscape and highlight BCoN’s efforts in this regard while soliciting participation from actors in the pipeline and the community at large.<br><br> | ||
'''Session Notes:''' https://goo.gl/zPMfV9 | '''Session Notes:''' https://goo.gl/zPMfV9 | ||
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| 4:30-5:00 | | 4:30-5:00 | ||
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| '''Day 1 Wrap-up''' (Shari Ellis) | | '''[[Media:Summit Day 1 Wrap Up Ellis.pdf|Day 1 Wrap-up]]''' (Shari Ellis) | ||
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|- | |- | ||
| 9:20-9:30 | | 9:20-9:30 | ||
| style="background-color:beige;" | Logistics, Announcements | | style="background-color:beige;" | '''[[Media:Day2SummitLogistics.pdf|Logistics, Announcements]]''' | ||
| style="background-color:gray;" | | | style="background-color:gray;" | | ||
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| '''[[ICER and Conservation at ADBC Summit VII|Workshop on Collections Data in Ecological and Conservation | | '''[[ICER and Conservation at ADBC Summit VII|Workshop on Collections Data in Ecological Research and Conservation]]''' (Libby Ellwood, Chrissy Alba, Deborah Paul, Anna Monfils, Larry Page)<br> | ||
The [[Integrating Collections and Ecological Research|ICER Working Group]] (Integrating Collections and Ecological Research), along with [https://bcon.aibs.org/ BCoN], will present a half-day workshop centered around ecologists who incorporate collections data in their scientific research and sharing a potential model program for integrating collections data in conservation efforts. Speakers invited will give talks representing community examples of museum specimen data integrated with other biodiversity data to enhance and inform efforts to address key ecological questions and support conservation efforts.<br><br> | The [[Integrating Collections and Ecological Research|ICER Working Group]] (Integrating Collections and Ecological Research), along with [https://bcon.aibs.org/ BCoN], will present a half-day workshop centered around ecologists who incorporate collections data in their scientific research and sharing a potential model program for integrating collections data in conservation efforts. Speakers invited will give talks representing community examples of museum specimen data integrated with other biodiversity data to enhance and inform efforts to address key ecological questions and support conservation efforts. <br><br> | ||
{| class="wikitable" | {| class="wikitable" | ||
| 9:30-9:35 | | 9:30-9:35 | ||
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|- | |- | ||
| 9:50-10:05 | | 9:50-10:05 | ||
| ''' | | '''The NEON Biorepository: Vision and Status''' (Dave Tazik) | ||
|- | |- | ||
| 9:50-10:05 | | 9:50-10:05 | ||
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'''Session Notes:''' https://goo.gl/D4oK8Z<br/><br/> | '''Session Notes:''' https://goo.gl/D4oK8Z<br/><br/> | ||
'''[[ICER_and_Conservation_at_ADBC_Summit_VII|ICER Workshop Wiki]]''' | '''[[ICER_and_Conservation_at_ADBC_Summit_VII|ICER Workshop Wiki]]''' | ||
| '''Changes/Improvements to the [https://www.idigbio.org/portal iDigBio Portal]''' (Richard Garand, Joanna McCaffrey, Shari Ellis)<br> | | '''[[Media:iDigBioPortal.pdf|Changes/Improvements to the [https://www.idigbio.org/portal iDigBio Portal]]]''' (Richard Garand, Joanna McCaffrey, Shari Ellis)<br> | ||
Overview of the iDigBio Portal with emphasis on use cases, features introduced since last presentation and NSF survey results.<br><br> | Overview of the iDigBio Portal with emphasis on use cases, features introduced since last presentation and NSF survey results.<br><br> | ||
'''Session Notes:''' https://goo.gl/hVThKY | '''Session Notes:''' https://goo.gl/hVThKY | ||
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3. Puerto Rico Hurricane support: Developing a reference base for a re-survey of butterflies (Catherine) | 3. Puerto Rico Hurricane support: Developing a reference base for a re-survey of butterflies (Catherine) | ||
'''Database Before You Label Protocol''': Finalize workflow(s) for rapidly digitizing material from | '''Database Before You Label Protocol''': Finalize workflow(s) for rapidly digitizing material from "collecting events", especially where a large amount of material is brought into the collection from inventories. The workflow is database neutral (Arctos [Derek Sikes], EMu [Crystal Maier], institutional [Chris Marshall], Specify [AndrewShort], Symbiota [ Neil Cobb]), it will be scalable from small to large institutions, and it will be cross-phyla functional (e.g., plants/herbaria, insects/museums). Develop strategy to ensure all museums adopt workflow. | ||
'''Inselect''': With the newer DSLR cameras that have 50 megapixel capacity it is possible that many museums might be able to use Inselect https://vimeo.com/160792078 can be used more widely. '''Puerto Rico''': Catherine Hulshof (U. of Puerto Rico) will discuss a Puerto Rican-Caribbean Lepidoptera project to study butterfly (maybe some moths) recovery/recolonization of areas destroyed. We will develop a strategy to have museums digitize their holdings of Puerto Rican/Caribbean butterflies as a good reference data set. | '''Inselect''': With the newer DSLR cameras that have 50 megapixel capacity it is possible that many museums might be able to use Inselect https://vimeo.com/160792078 can be used more widely. '''Puerto Rico''': Catherine Hulshof (U. of Puerto Rico) will discuss a Puerto Rican-Caribbean Lepidoptera project to study butterfly (maybe some moths) recovery/recolonization of areas destroyed. We will develop a strategy to have museums digitize their holdings of Puerto Rican/Caribbean butterflies as a good reference data set.<br> | ||
'''Session Notes:''' https://goo.gl/YUCSy5 | |||
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{| class="wikitable" | {| class="wikitable" | ||
| 10:30-11:00 | | 10:30-11:00 | ||
| '''[ | | '''[https://github.com/MorphoSource/adbc-2017-democamp/ MorphoSource]''' (Julie Winchester) | ||
|- | |- | ||
| 11:00-11:30 | | 11:00-11:30 | ||
| '''TaxonWorks''' (Matt Yoder) | | '''[http://taxonworks.org TaxonWorks]''' (Matt Yoder) | ||
|- | |- | ||
| 11:30-12:00 | | 11:30-12:00 | ||
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|- | |- | ||
| 10:40-10:55 | | 10:40-10:55 | ||
| ''' | | '''Predicting phenology, demography and extinction risk due to climate change from ecophysiology and museum records''' (Barry Sinervo) | ||
|- | |- | ||
| 10:55-11:10 | | 10:55-11:10 | ||
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| 3:30-4:00 | | 3:30-4:00 | ||
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| '''Summit Wrap-up''' (Gil Nelson)<br><br> | | '''[[Media:Summit Day 2 Wrap Up.pdf|Summit Wrap-up]]''' (Gil Nelson)<br><br> | ||
Breakout Summaries: https://goo.gl/rCgN54 | Breakout Summaries: https://goo.gl/rCgN54 | ||
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= Report and Evaluation = | = Report and Evaluation = | ||
[https://www.idigbio.org/content/adbc-summit-2017-report ADBC Summit 2017 Report] | |||
[https://www.idigbio.org/sites/default/files/workshop-presentations/summit7/ADBC%20Summit%20VII%20Evaluation%20Report.pdf ADBC Summit 2017 Evaluation] | |||
= Photos = | = Photos = | ||
= | =Recorded ADBC Summit Proceedings= | ||
===Wednesday November 1, 2017=== | |||
====McGuire Classroom==== | |||
;Orientation - Welcome to ADBC by the iDigBio Core Team(1030am) | |||
:http://idigbio.adobeconnect.com/p6v806qo3c18/ | |||
;oVert TCN Kickoff Meeting (part1) | |||
:http://idigbio.adobeconnect.com/pluovtn6xhto/ | |||
;oVert TCN Kickoff Meeting (part2) | |||
:http://idigbio.adobeconnect.com/p5ou6qkqsnmo/ | |||
===Thursday November 2, 2017=== | |||
====Harn Chandler Auditorium==== | |||
;Opening & Welcome, Logistics, ADBC Program Update, 2017 TCNs (930-1035) | |||
:http://idigbio.adobeconnect.com/pctp7difar85/ | |||
;2017 TCNs,2016 TCNs,2015 TCNs,2014 TCNs,2013 TCNs,2012 TCNs,2011 TCNs (1055-1210) | |||
:http://idigbio.adobeconnect.com/pugdivq00dlf/ | |||
;Group Discussion-Data Integration, Attribution and Interoperability (115-2) | |||
:http://idigbio.adobeconnect.com/ps9sdbsbo016/ | |||
;Meeting of the Symbiota Working Group | |||
:http://idigbio.adobeconnect.com/p3v0f3kk4mmu/ | |||
;Day 1 Wrap-up | |||
:http://idigbio.adobeconnect.com/pwwsomftrf0u/ | |||
====Powell Classroom==== | |||
;oVert/MorphoSource Working Group | |||
:http://idigbio.adobeconnect.com/ph5zk1ws7c0i/ | |||
===Friday November 3, 2017=== | |||
====Harn Chandler Auditorium==== | |||
;Demo Camp (Part1) | |||
:http://idigbio.adobeconnect.com/pb642mx8jyhv/ | |||
;Demo Camp (Part2) | |||
:http://idigbio.adobeconnect.com/pxijtqf9cff1/ | |||
;Building a Local Carpentries Community | |||
:http://idigbio.adobeconnect.com/pga0prsd5c12/ | |||
;Summit Wrap Up | |||
:http://idigbio.adobeconnect.com/plyqnbes0nvn/ | |||
;Natural History Seminar | |||
:http://idigbio.adobeconnect.com/pkcw3kts1esl/ | |||
====Powell Classroom==== | |||
;Integrating Collections, Ecological Research and Conservation - Half-day Symposium (Part1) | |||
:http://idigbio.adobeconnect.com/pd8jpb2vqcau/ | |||
::David Tazik (NEON) (recording time mark 1:55-17:40) | |||
::Jenny McGuire (Georgia Tech) (recording time mark 19:54-35.22) | |||
;Integrating Collections, Ecological Research and Conservation - Half-day Symposium (Part2) | |||
:http://idigbio.adobeconnect.com/pys67j468xhl/ | |||
::Anna Monfils (CMU) (recording time mark 00:44-18:23)* no sound - slides only | |||
::Barry Sinervo (UCSC) (recording time mark 19:23-35:43) | |||
::Elizabeth Martin (UF) (recording time mark 36:15-50:15) | |||