Marine Invertebrate Digitization Workshop 2019
| Quick Links for DigIn: Marine Invertebrate Digitization Workshop 2018 | |
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| Agenda | |
General Information
When: 4-5 February 2019
Where: iDigBio, Gainesville, Florida
- Directions Google Map Link: https://goo.gl/maps/Q4DMRDP2MRT2 from Holiday Inn University Center to Dickinson Hall
Overview
In this 2 day workshop, collection personnel from all major and most medium-sized IZ collections in the US will share information about their collections and curatorial and digitization workflows. Participants will discuss best practices and consider ways to improve on existing methods to improve efficiency and speed of data mobilization. These will include discussing citizen-enabled data capture such as Notes from Nature, handling labels in fluid collections, imaging methods, assembling, sharing, and digitization of station data from major expeditions, etc. We will also discuss standardizing nomenclature through the World Register of Marine Species (WoRMS), linking tissue collections through Global Genome Biodiversity Network (GGBN), and DNA sequence/barcode data through Barcode of Life Data System (BOLD).
Agenda
Agenda below may change as we desire or need.
- Online abbreviated version
- Online annotated version
Sunday 3 February 2019
Informal Collection Tours 5-630 PM, Dickinson Hall, 1659 Museum Road
Informal Dinner at Piesano's Restaurant 7 PM (restaurant located in the Holiday Inn University Center, Gainesville)
| Monday 4 Feb 2019 | |||
| TIME | THEME | WHO / comments | TOPICS TO COVER |
|---|---|---|---|
| 8-8:20 | Arrival | Coffee Tea Sign-in Log-on Demographics | |
| 8:20-8:40 | Logistics Intro to ADBC and iDigBio |
Gustav and Deb | Welcome, logistics, agenda
|
| 8:40-9:00 | Intro & overview | Gustav Paulay | Introduction presentation |
| 9:00-10:30 | Collection Overviews | Adam Baldinger Deborah Paul |
Collection presentations
|
| 10:30-10:45 | Coffee break | ||
| 10:45-11:15 | Goals part 1 | Chris Johnson | Goals and general discussion |
| 11:15-12:30 | Data Capture Workflows | Deb Paul | Data capture workflows - presentations Overview 10 min x 6 |
| Mandy Bemis (UF) | |||
| Bill Moser (Smithsonian) | |||
| Jean-Marc Gagnon (CMN) | |||
| Henry Choong (RBCM) Specify Workbench issues | |||
| Ed Gilbert (Symbiota) Symbiota bulk uploads | |||
| Libby et al (LACM) citizen science pros & cons | |||
| 12:30-1:30 | Lunch (provided) | ||
| 1:30-2:15 | Georeferencing | Nelson Rios | Georeferencing overview & discussion |
| 2:15-2:45 | Symbiota | Ed Gilbert | Symbiota |
| 2:45-3:15 | Breakout Groups | Leads | Goals & workflow breakout discussions |
| (self select) | GROUP 1 - what taxa, areas, scientific goals | ||
| GROUP 2 - how much data to capture and how? | |||
| GROUP 3 - estimating effort & cost | |||
| 3:15-3:30 | Coffee break | Coffee Tea Log on | |
| 3:30-3:45 | REPORTS backs from groups | Group Leads | Take notes and summarize main points w/ Google docs |
| 3:45-4:15 | Imaging | Zach Randall | Imaging presentation & discussion |
| 4:15-4:45 | Genetics | Regina Wetzer | Genetic collections |
| 5:00-6:30 | Social & IZ tour | ||
| 7:00 | Dinner | The Swamp and Map to The Swamp 1642 W University Ave, Gainesville, FL | |
| Tuesday 5 Feb 2019 |
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| TIME | THEME | WHO / comments | TOPICS TO COVER |
| 8-8:30 | Arrival | Coffee Tea Log on | |
| 8:30-9:00 | Sequence data | Adriana Radulovici
Ed Gilbert |
Vouchering sequence data: BOLD, GenBank |
| 9:00-9:15 | Linking Genetic Resources | Warren Brown | Connecting a Genetic Resource Repository to Specify |
| 9:15-9:45 | WoRMS | Bart Vanhoorne | WoRMS |
| 9:45-10:00 | Nomenclature | Rudiger Bieler | Nomenclature discussion |
| 10:00-10:15 | Coffee break | ||
| 10:15-10:45 | Breakout Groups | Leads | Ancillary data & nomenclature breakout discussions |
| (self select) | GROUP 1 workflows including georeferencing | ||
| GROUP 2 genetics | |||
| GROUP 3 nomenclature Rudiger's Nomenclature discussion notes | |||
| 10:45-11:15 | REPORTS from groups | Group Leads | Take notes and summarize main points w/ Google docs |
| 11:15-11:35 | Digitization Overview Symbiota live demo |
Deb Paul Edward Gilbert |
Digitization Overview |
| 11:35-12:00 | Data Mobilization | Kevin Love | Data Mobilization |
| Ed Gilbert | |||
| 12:00-1:00 | Lunch (provided) | ||
| 1:00-1:30 | Physical infrastructure | Jean-Marc Gagnon
Henry Choong |
Specimen storage & collection organization presentation & discussion |
| 1:30-2:30 | Dream Big: Science with IZ data | Jean-Marc Gagnon | Scientific goals |
| Breakout groups google docs |
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| 2:30-3:15 | Broader Impacts | Libby Ellwood Molly Phillips |
DigIn Broader Impacts |
| 3:15-3:30 | Coffee break | ||
| 3:30-4:00 | Management | Chris Johnson Edward Gilbert Nelson Rios |
Project and Data Management |
| 4:00-4:30 | Wrap up | Gustav Paulay | |
| 4:30-4:45 | Survey | Everyone | iDigBio exit survey for participants |
Logistics
- Logistics for Workshop (pdf) In this document you will find information about:
- hotel location: Holiday Inn University Center, Gainesville, FL
- Workshop Location information
- hotel-airport shuttle information
- workshop links for uploading talks, connecting to wifi, etc
Group Notes
Taking group notes together.