Coding Phenological Data from Herbarium Sheets
Logistics
- Workshop Logistics Document
- UC Berkeley Parking Information
- Hotel information
- Mass Transit information
- Original workshop announcement
Workshop Materials
Agenda, Day 1
Saturday, March 12, 2016
Day One | ||
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Time | Topic | Presenter(s)/Leader(s) |
7:00-8:00 a.m. | Breakfast at University and Jepson Herbaria | |
8:00-8:10 a.m. | Welcome | Pam Soltis iDigBio/University of Florida |
8:10 - 8:20 a.m. | Background/Orientation to workshop Workshop goals and products |
Jenn Yost Cal Poly |
8:20-9:40 a.m. | Lightning Introductions (1 slide per person) | |
9:40-9:55 a.m. | Break | |
9:55-10:50 | Discussion of Survey Results (provided in packet) •Analysis of data gaps •Draft priorities in groups •Flora of North America |
Jenn Yost, moderator |
10:50-11:15 a.m. | iDigBio introduction How data moves from database to aggregators, to iDigBio. |
Gil Nelson iDigBio, Florida State University |
11:15-11:35 11:35-11:55 |
Data standards community •Darwin Core •Apple Core |
John Wieczorek James Macklin |
12:00-1:15 p.m. | Lunch and Tour the University and Jepson Herbaria | Brent Mishler is giving a 20 minute tour |
1:15-1:35 p.m. | Data standards community •Plant Phenology Ontology |
Ramona Walls |
1:35-2:00 p.m. | NEVP and Symbiota | Patrick Sweeney, Yale Ed Gilbert, Symbiota |
2:00-2:45 p.m. | Plenary Discussion | Jenn and Gil, moderate |
2:45-3:00 p.m. | Break | |
3:00-4:00 p.m. | Breakout Session #1
Use specimens to assess and draft scoring schema, and rank according to priorities.Work in Google folder. |
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4:00-5:00 p.m. | Group Discussion Priority ranking Metrics to score Vocabulary Propose fields/define fields Scoring from images v. specimens Daily Wrap-up/Q&A Plans for Day 2 Create groups/topics for tomorrow |
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Dinner on Your Own Recommended gathering place: Jupiter (http://www.jupiterbeer.com/) |
Agenda, Day 2
Sunday, March 13, 2016
Day Two | ||
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Time | Topic | Presenter(s)/Leader(s) |
7:00-8:00 a.m. | Breakfast at University and Jepson Herbaria | |
8:00-9:00 a.m. | Discussion from Day 1 and steps forward Form groups or make new groups. |
Gil Nelson, Moderator |
9:00-9:30 a.m. | Breakout Session #2
Do our draft methods work? |
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9:30-10:00 p.m. | Regroup to address issues and break | |
10:00-11:00 p.m. | Breakout #3 1) Data Standards group 2) Database group Groups formed around taxonomic groups: 3) “Normal” Angiosperms 4) Grasses/sedges/rushes 5) Gymnosperms 6) Wind-pollinated non-grasses 7) Other? |
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11:00-12:00 p.m. | Next steps forward with DarwinCore - Set our DwC working group Check in: Do our draft methods require revision? How do our draft terms fit with current DwC? |
John Wieczorek James Macklin |
12:00-1:00 p.m. | Lunch | |
1:00-2:00 p.m. | Next steps forward for databases (Symbiota, Specify, iDigBio) |
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2:00-3:00 p.m. | Breakout #4 1) Draft Introduction to justify our work Draft finalized protocols 2) Draft Collections ISSUES document 3) Draft Research ISSUES document
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3:00-3:15 p.m. | Break | |
3:15-4:15 p.m. | Finalize drafts of methods, utility of specimens for phenology research |
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4:15-5:00 p.m. | Summary of next steps | |
Dinner on Your Own |
Day 1: First break out groups | |||||
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Group 1 | Group 2 | Group 3 | Group 4 | Group 5 | |
Database | Ed Gilbert | David Baxter | Ben Anhalt Greg Riccardi |
Gil Nelson | Ramona Walls Michael Denslow |
Standards | Stanley Blum | Brian Stucky | James Macklin Ashley Morris |
Katja Seltman | Katie Stanley John Wieczorek |
International | Kjell Bolmgren | Marie Keatley | Tim Sparks | Constantin Zohner | |
Field Data | Alycia Crall | Ellen Denny | Kathy Gerst | Susan Mazer | Jill Goodwin |
Herbaria | Ellen Dean Charlie Willis Staci Markos |
Natalie Rossington Richard Carter |
Amanda Gallinat Debra Trock |
Jenn Yost Patrick Sweeney Mare Nazaire |
Brent Mishler Libby Ellwood |
Workshop Participants
• Alycia Crall, National Ecological Observatory Network • Amanda Gallinat, Boston University • Ashley Morris, Middle Tennessee State University, SouthEast Regional Network of Expertise and Collections (SERNEC) • Ben Anhalt, Specify Database • Brent Mishler, UC Berkeley, Consortium of California Herbaria (CCH) • Brian Stucky, University of Florida, Plant Phenology Ontology • Charlie Willis, Harvard University Herbaria • Constantin Zohner, Ludwig-Maximilians-Universität München • Debra Trock, California Academy of Sciences • David Baxter, UC Berkeley, CCH • Edward Gilbert , Arizona State University, Symbiota • Ellen Dean, UC Davis Herbarium • Ellen Denny, USA National Phenology Network • Elspeth Haston, The Royal Botanic Garden Edinburgh • Gil Nelson, Florida State University, iDigBio • Greg Riccardi, Florida State University, iDigBio • James Macklin, Agriculture and Agri-food Canada, Apple Core • Jenn Yost, Cal Poly State University, San Luis Obispo • Jillian Goodwin, Florida Museum of Natural History, iDigBio • John Wieczorek, UC Berkeley, Museum of Vertebrate Zoology, Darwin Core Representative • Katelin Stanley, Florida State University, WeDigBio • Kevin Browne, University of California, Natural Reserve System • Kjell Bolmgren, Swedish University of Agricultural Sciences, PEP725 - Pan European Phenology Project • Libby Ellwood, Florida State University, iDigBio • Mare Nazaire, Rancho Santa Ana Botanic Garden • Marie Keatley, University of Melbourne • Michael Denslow, Appalachian State University (SERNEC), University of Florida (Notes from Nature) • Natalie Rossington, UC Santa Barbara • Pam Soltis, University of Florida, iDigBio • Patrick Sweeney, Yale Peabody Museum of Natural History, Mobilizing New England Vascular Plant Specimen Data to Track Environmental Changes (NEVP) • Ramona Walls, CyVerse, Plant Phenology Ontology • Richard Carter, Valdosta State University • Robert Guralnick, Florida Museum of Natural History • Staci Markos, UC Berkeley, CCH • Stanley Blum, Biodiversity Information Standards (TDWG) • Susan Mazer, UC Santa Barbara, National Phenology Network - California Phenology Project • Tim Sparks, Coventry University