Marine Invertebrate Digitization Workshop 2019: Difference between revisions
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= Agenda = | = Agenda = | ||
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! style="background-color:#93eeee;" | TIME | |||
! style="background-color:#93eeee;" | THEME | |||
! style="background-color:#93eeee;" | WHO / comments | |||
! style="background-color:#93eeee;" | TOPICS TO COVER | |||
|- | |||
| 8-8:20 | |||
| Arrival | |||
| | |||
| Coffee Tea Sign-in Log-on | |||
|- | |||
| 8:20-8:40 | |||
| Logistics | |||
| Gustav and Deb | |||
| Welcome, logistics, agenda, round of introductions | |||
* https://bit.ly/DigInFolder | |||
* https://bit.ly/DigInWiki [this wiki page] | |||
|- | |||
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|- | |||
| 8:40-9:00 | |||
| Intro & overview | |||
| Gustav Paulay | |||
| Introduction presentation | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 9:00-10:30 | |||
| Collection Overviews | |||
| Adam Baldinger | |||
| Collection presentations | |||
|- | |||
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|- | |||
| style="background-color:#ffffc7;" | 10:30-45 | |||
| style="background-color:#ffffc7;" | Coffee break | |||
| style="background-color:#ffffc7;" | | |||
| style="background-color:#ffffc7;" | | |||
|- | |||
| 10:45-11:15 | |||
| Goals part 1 | |||
| Chris Johnson | |||
| Goals and general discussion | |||
|- | |||
| | |||
| | |||
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| | |||
|- | |||
| 11:15-12:30 | |||
| Data Capture Workflows | |||
| Deb Paul | |||
| Data capture workflows presentations | |||
10 min x 6 | |||
|- | |||
| rowspan="6" colspan="3" | | |||
| Mandy Bemis (UF) | |||
|- | |||
| Bill Moser (Smithsonian) | |||
|- | |||
| Jean-Marc Gagnon (CMN) | |||
|- | |||
| Henry Choong (RBCM) Specify Workbench issues | |||
|- | |||
| Ed Gilbert (Symbiota) Symbiota bulk uploads | |||
|- | |||
| Libby et al (LACM) citizen science pros & cons | |||
|- | |||
| style="background-color:#ffffc7;" | 12:30-1:30 | |||
| style="background-color:#ffffc7;" | Lunch | |||
| style="background-color:#ffffc7;" | | |||
| style="background-color:#ffffc7;" | | |||
|- | |||
| 1:30-2:15 | |||
| Georeferencing | |||
| Nelson Rios | |||
| Georeferencing overview & discussion | |||
|- | |||
| | |||
| | |||
| | |||
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|- | |||
| 2:15-2:45 | |||
| Symbiota | |||
| Ed Gilbert | |||
| Symbiota | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 2:45-3:15 | |||
| Breakout Groups | |||
| Leads | |||
| Goals & workflow breakout discussions | |||
|- | |||
| rowspan="4" colspan="2" | | |||
| (self select) | |||
| GROUP 1 - what taxa, areas, scientific goals | |||
|- | |||
| | |||
| GROUP 2 - how much data to capture and how? | |||
|- | |||
| | |||
| GROUP 3 - estimating effort & cost | |||
|- | |||
| | |||
| | |||
|- | |||
| 3:15-3:30 | |||
| Coffee break | |||
| | |||
| Coffee Tea Log on | |||
|- | |||
| 3:30-3:45 | |||
| REPORTS backs from groups | |||
| Group Leads | |||
| Take notes and summarize main points w/ Google docs | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 3:45-4:15 | |||
| Imaging | |||
| Zach Randall? | |||
| Imaging presentation & discussion | |||
|- | |||
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| | |||
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|- | |||
| 4:15-4:45 | |||
| Genetics | |||
| Regina Wetzer | |||
| Genetic collections | |||
|- | |||
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|- | |||
| 5:00-6:30 | |||
| Social & IZ tour | |||
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|- | |||
| 7:00 | |||
| Dinner | |||
| | |||
| Peisanos @ Holiday Inn | |||
|- | |||
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|- | |||
| Tuesday | |||
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|- | |||
| 8-8:30 | |||
| Arrival | |||
| | |||
| Coffee Tea Log on | |||
|- | |||
| 8:30-9:00 | |||
| Sequence data | |||
| Adriana Radulovici | |||
Ed Gilbert | |||
| Vouchering sequence data: BOLD, GenBank | |||
|- | |||
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|- | |||
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|- | |||
| 9:00-9:30 | |||
| WoRMS | |||
| Bart Vanhoorne | |||
| WoRMS | |||
|- | |||
| | |||
| | |||
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|- | |||
| 9:30-10:00 | |||
| Nomenclature | |||
| Rudiger Bieler | |||
| Nomenclature discussion | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 10:00-10:15 | |||
| Coffee break | |||
| | |||
| | |||
|- | |||
| 10:15-10:45 | |||
| Breakout Groups | |||
| Leads | |||
| Ancillary data & nomenclature breakout discussions | |||
|- | |||
| rowspan="4" colspan="2" | | |||
| (self select) | |||
| GROUP 1 imaging | |||
|- | |||
| | |||
| GROUP 2 genetics | |||
|- | |||
| | |||
| GROUP 3 nomenclature | |||
|- | |||
| | |||
| | |||
|- | |||
| 10:45-11:15 | |||
| REPORTS from groups | |||
| Group Leads | |||
| Take notes and summarize main points w/ Google docs | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 11:15-11:35 | |||
| Digitization Overview | |||
| Deb Paul | |||
| Digitization Overview | |||
|- | |||
| | |||
| | |||
| | |||
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|- | |||
| 11:35-12:00 | |||
| Data Mobilization | |||
| Kevin Love | |||
| Data Mobilization | |||
|- | |||
| | |||
| | |||
| Ed Gilbert | |||
| | |||
|- | |||
| 12:00-1:00 | |||
| Lunch | |||
| | |||
| | |||
|- | |||
| 1:00-1:30 | |||
| Physical infrastructure | |||
| Jean-Marc Gagnon | |||
Henry Choong | |||
| Specimen storage & collection organization - presentation & discussion | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 1:30-2:30 | |||
| Dream Big: Science with IZ data | |||
| Jean-Marc Gagnon | |||
| Scientific goals | |||
|- | |||
| | |||
| | |||
| Breakout groups? | |||
| | |||
|- | |||
| 2:30-3:15 | |||
| Broader Impacts | |||
| Libby Ellwood | |||
| Broader impacts | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 3:15-3:30 | |||
| Coffee break | |||
| | |||
| | |||
|- | |||
| 3:30-4:00 | |||
| Management | |||
| Chris Johnson? | |||
| Project and Data Management | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| | |||
| | |||
| | |||
| | |||
|- | |||
| 4:00-4:30 | |||
| Wrap up | |||
| | |||
| | |||
|- | |||
| 4:30-4:45 | |||
| Survey | |||
| | |||
| iDigBio exit survey for participants | |||
|} | |||
= Logistics = | = Logistics = |
Revision as of 18:39, 30 January 2019
DigIn: Marine Invertebrate Digitization Workshop 2018 | |
---|---|
General Information
When: 4-5 February 2019
Where: iDigBio, Gainesville, Florida
- Directions Google Map Link: https://goo.gl/maps/Q4DMRDP2MRT2 from hotel to Dickinson Hall
Workshop Development In Progress
Overview
In this 2 day workshop, collection personnel from all major and most medium-sized IZ collections in the US will share information about their collections and curatorial and digitization workflows. Participants will discuss best practices and consider ways to improve on existing methods to improve efficiency and speed of data mobilization. These will include discussing citizen-enabled data capture such as Notes from Nature, handling labels in fluid collections, imaging methods, assembling, sharing, and digitization of station data from major expeditions, etc. We will also discuss standardizing nomenclature through the World Register of Marine Species (WoRMS), linking tissue collections through Global Genome Biodiversity Network (GGBN), and DNA sequence/barcode data through Barcode of Life Data System (BOLD).
Agenda
TIME | THEME | WHO / comments | TOPICS TO COVER |
---|---|---|---|
8-8:20 | Arrival | Coffee Tea Sign-in Log-on | |
8:20-8:40 | Logistics | Gustav and Deb | Welcome, logistics, agenda, round of introductions
|
8:40-9:00 | Intro & overview | Gustav Paulay | Introduction presentation |
9:00-10:30 | Collection Overviews | Adam Baldinger | Collection presentations |
10:30-45 | Coffee break | ||
10:45-11:15 | Goals part 1 | Chris Johnson | Goals and general discussion |
11:15-12:30 | Data Capture Workflows | Deb Paul | Data capture workflows presentations
10 min x 6 |
Mandy Bemis (UF) | |||
Bill Moser (Smithsonian) | |||
Jean-Marc Gagnon (CMN) | |||
Henry Choong (RBCM) Specify Workbench issues | |||
Ed Gilbert (Symbiota) Symbiota bulk uploads | |||
Libby et al (LACM) citizen science pros & cons | |||
12:30-1:30 | Lunch | ||
1:30-2:15 | Georeferencing | Nelson Rios | Georeferencing overview & discussion |
2:15-2:45 | Symbiota | Ed Gilbert | Symbiota |
2:45-3:15 | Breakout Groups | Leads | Goals & workflow breakout discussions |
(self select) | GROUP 1 - what taxa, areas, scientific goals | ||
GROUP 2 - how much data to capture and how? | |||
GROUP 3 - estimating effort & cost | |||
3:15-3:30 | Coffee break | Coffee Tea Log on | |
3:30-3:45 | REPORTS backs from groups | Group Leads | Take notes and summarize main points w/ Google docs |
3:45-4:15 | Imaging | Zach Randall? | Imaging presentation & discussion |
4:15-4:45 | Genetics | Regina Wetzer | Genetic collections |
5:00-6:30 | Social & IZ tour | ||
7:00 | Dinner | Peisanos @ Holiday Inn | |
Tuesday | |||
8-8:30 | Arrival | Coffee Tea Log on | |
8:30-9:00 | Sequence data | Adriana Radulovici
Ed Gilbert |
Vouchering sequence data: BOLD, GenBank |
9:00-9:30 | WoRMS | Bart Vanhoorne | WoRMS |
9:30-10:00 | Nomenclature | Rudiger Bieler | Nomenclature discussion |
10:00-10:15 | Coffee break | ||
10:15-10:45 | Breakout Groups | Leads | Ancillary data & nomenclature breakout discussions |
(self select) | GROUP 1 imaging | ||
GROUP 2 genetics | |||
GROUP 3 nomenclature | |||
10:45-11:15 | REPORTS from groups | Group Leads | Take notes and summarize main points w/ Google docs |
11:15-11:35 | Digitization Overview | Deb Paul | Digitization Overview |
11:35-12:00 | Data Mobilization | Kevin Love | Data Mobilization |
Ed Gilbert | |||
12:00-1:00 | Lunch | ||
1:00-1:30 | Physical infrastructure | Jean-Marc Gagnon
Henry Choong |
Specimen storage & collection organization - presentation & discussion |
1:30-2:30 | Dream Big: Science with IZ data | Jean-Marc Gagnon | Scientific goals |
Breakout groups? | |||
2:30-3:15 | Broader Impacts | Libby Ellwood | Broader impacts |
3:15-3:30 | Coffee break | ||
3:30-4:00 | Management | Chris Johnson? | Project and Data Management |
4:00-4:30 | Wrap up | ||
4:30-4:45 | Survey | iDigBio exit survey for participants |
Logistics
- Logistics for Workshop (pdf) In this document you will find information about:
- hotel location: Holiday Inn University Center, Gainesville, FL
- Workshop Location information
- hotel-airport shuttle information
- workshop links for uploading talks, connecting to wifi, etc
Group Notes
Taking group notes together.