Fluid-preserved Specimen Imaging Workshop: Difference between revisions

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'''Airport transportation:''' hotel shuttle, taxi, uber, lyft <br>
'''Airport transportation:''' hotel shuttle, taxi, uber, lyft <br>
'''Workshop hotel:''' Holiday Inn (walking distance of workshop venue) <br>
'''Workshop hotel:''' Holiday Inn (walking distance of workshop venue) <br>
'''Workshop venue:''' Dickinson Hall, University of Florida <br>
'''Workshop venue:''' Room 371, Dickinson Hall, University of Florida <br>
'''Invited participant support:''' Hotel cost covered; flight and per diem expenses reimbursed.
'''Invited participant support:''' Hotel cost covered; flight and per diem expenses reimbursed.


= Agenda =
= Agenda =
''Details of agenda will be updated and finalized at a later point, however we anticipate using the format below.''
''Agenda details may be updated, even during the workshop.''
{| class="wikitable"
{| class="wikitable"
|-
|-
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! style="background-color:#93eeee;" |
! style="background-color:#93eeee;" |
! style="background-color:#93eeee;" |  
! style="background-color:#93eeee;" |  
|-
|style="background-color:#ffffc7;"| 7:00-8:00
|style="background-color:#ffffc7;"| Breakfast on your own
| style="background-color:#ffffc7;"|
|-
|-
|style="background-color:#ffffc7;"| 8-8:30
|style="background-color:#ffffc7;"| 8-8:30
|style="background-color:#ffffc7;"| Check in, coffee, breakfast
|style="background-color:#ffffc7;"| Check in, coffee
| style="background-color:#ffffc7;"|
| style="background-color:#ffffc7;"|
|-
|-
|style="background-color:#ffffc7;"| 8-8:30
|style="background-color:#ffffc7;"| 8:30
|style="background-color:#ffffc7;"|Workshop Overview and Framing  
|style="background-color:#ffffc7;"|Workshop Overview and Framing  
|style="background-color:#ffffc7;"|Gil Nelson
|style="background-color:#ffffc7;"|Gil Nelson
||style="background-color:#ffffc7;"| 8:50  
|-
|style="background-color:#ffffc7;"| 8:50  
|style="background-color:#ffffc7;"|A Glimpse at the Future of Specimen Imaging  
|style="background-color:#ffffc7;"|A Glimpse at the Future of Specimen Imaging  
|style="background-color:#ffffc7;"|Dave Blackburn
|style="background-color:#ffffc7;"|Dave Blackburn
||style="background-color:#ffffc7;" 9:10  
|-
|style="background-color:#ffffc7;"| 9:10  
|style="background-color:#ffffc7;"|Photogrammetry  
|style="background-color:#ffffc7;"|Photogrammetry  
|style="background-color:#ffffc7;"|Nelson Rios  
|style="background-color:#ffffc7;"|Nelson Rios
|-
|style="background-color:#ffffc7;"| 9:30  
|style="background-color:#ffffc7;"| 9:30  
|style="background-color:#ffffc7;"|3D Surface Scanning  
|style="background-color:#ffffc7;"|3D Surface Scanning  
|style="background-color:#ffffc7;"|Zach Randall & Ed Stanley  
|style="background-color:#ffffc7;"|Ed Stanley  
|  
|-
|style="background-color:#ffffc7;"| 9:50-10:30
|style="background-color:#ffffc7;"| Brainstorm session #1: Sky's the limit--free of financial and other constraints: Aspirations outside the box for imaging technologies, challenges, and protocols (artificial intelligence? Machine learning? Conveyor belts?)
|style="background-color:#ffffc7;"|Emily Braker
|-
|-
| style="background-color:#ffffc7;"| 10:15-10:30
| style="background-color:#ffffc7;"| 10:30-11:00
| style="background-color:#ffffc7;"| Break
| style="background-color:#ffffc7;"| Break
| style="background-color:#ffffc7;"|
| style="background-color:#ffffc7;"|
|-
|style="background-color:#ffffc7;"| 11:00-11:45
|style="background-color:#ffffc7;"| Brainstorm session #2: Current Challenges and Bottlenecks for Creating and Using Images
|style="background-color:#ffffc7;"|Gil Nelson
|-
| style="background-color:#ffffc7;"| 11:45-1:00
| style="background-color:#ffffc7;"| Lunch (provided)
| style="background-color:#ffffc7;"|
|-
|style="background-color:#ffffc7;"| 1:00-1:45
|style="background-color:#ffffc7;"| Brainstorm session #3: Image Quality and Research Uses
|style="background-color:#ffffc7;"|Zach Randall
|-
|style="background-color:#ffffc7;"| 1:45-2:30
|style="background-color:#ffffc7;"| Brainstorm session #4: Non-research uses of Images (Outreach, Education)
|style="background-color:#ffffc7;"|Molly Phillips
|-
|-
| 10:30-12:30
|style="background-color:#ffffc7;"| 2:30-3:15
| Speakers
|style="background-color:#ffffc7;"| Brainstorm session #5: Enriching Data through Trait Extraction from Images
|  
|style="background-color:#ffffc7;"|Jill Goodwin
|-
|-
| style="background-color:#ffffc7;"| 12:30-1:30
| style="background-color:#ffffc7;"| 3:15-3:45
| style="background-color:#ffffc7;"| Lunch (provided)
| style="background-color:#ffffc7;"| Break
| style="background-color:#ffffc7;"|
| style="background-color:#ffffc7;"|
|-
|-
| 1:30-5:00
| Breakout group discussion
|
|-
|-
| style="background-color:#ffffc7;"| 3:45-4:15
| style="background-color:#ffffc7;"| Brainstorm session #6: Imaging methods: Selecting the Best Option
| style="background-color:#ffffc7;"|Zach Randall
|-
|style="background-color:#ffffc7;"| 4:15-5:00
|style="background-color:#ffffc7;"| Daily Reflection and Synthesis: What have we Learned? Top ten Ideas?
|style="background-color:#ffffc7;"|Gil Nelson
|-
|-
|'''Day 2'''
|'''Day 2'''
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|  
|  
|-
|-
! style="background-color:#93eeee;" | TIME
! style="background-color:#93eeee;"| TIME
! style="background-color:#93eeee;" |
! style="background-color:#93eeee;"|
! style="background-color:#93eeee;" |  
! style="background-color:#93eeee;"|
|-
|style="background-color:#ffffc7;"| 7:30 - 8:30
|style="background-color:#ffffc7;"| Breakfast on your own
| style="background-color:#ffffc7;"|
|-
|-
| style="background-color:#ffffc7;" | 8-8:30
| style="background-color:#ffffc7;" | 8:30-9:00
| style="background-color:#ffffc7;" |Coffee, breakfast
| style="background-color:#ffffc7;" | Coffee
| style="background-color:#ffffc7;" |
| style="background-color:#ffffc7;" |
|-
|-
| 8:30-10:15
|style="background-color:#ffffc7;"| 9:00-10:30
|  
|style="background-color:#ffffc7;"| CT Scanning and 2D imaging lab visits
|
|style="background-color:#ffffc7;"| Dave Blackburn, Ed Stanley, Zach Randall
|  
|-
|-
| style="background-color:#ffffc7;" | 10:15-10:30
| style="background-color:#ffffc7;" | 10:30-11:00
| style="background-color:#ffffc7;" | Coffee break
| style="background-color:#ffffc7;" | Coffee break
| style="background-color:#ffffc7;" |
| style="background-color:#ffffc7;" |
|-
|-
| 10:30-12:30
| Speakers
|
|-
|-
| style="background-color:#ffffc7;"| 12:30-1:30
| style="background-color:#ffffc7;" | 11:00-11:45
| style="background-color:#ffffc7;" | Create outline for workshop publication
| style="background-color:#ffffc7;" | Dave Blackburn
|-
|-
| style="background-color:#ffffc7;"| 11:45-1:00
| style="background-color:#ffffc7;"| Lunch (provided)
| style="background-color:#ffffc7;"| Lunch (provided)
| style="background-color:#ffffc7;"|
| style="background-color:#ffffc7;"|
|-
|-
| 1:30-3:30
| Breakout group discussion
|
|-
|-
|3:30-5:00
| style="background-color:#ffffc7;"| 1:00-3:00
|Gather concluding perspectives/ Wrap up
| style="background-color:#ffffc7;"| Each of three breakout groups works on one or more sections from the outline
|
| style="background-color:#ffffc7;"| Group nominated/selected leader and scribe
|-
|-
| style="background-color:#ffffc7;"| 3:00-3:30
| style="background-color:#ffffc7;"| Coffee break
| style="background-color:#ffffc7;"|
|-
|-
| style="background-color:#ffffc7;"| 3:30-5:00
| style="background-color:#ffffc7;"| Report outs, concluding perspectives, wrap up
| style="background-color:#ffffc7;"| Emily Braker, Dave Blackburn, Gil Nelson
|-
|-
|}
|}

Latest revision as of 06:09, 27 February 2020



General Information

When: March 3-4, 2020 (Travel: March 2nd & 5th)
Where: Dickinson Hall, University of Florida; Gainesville, FL
Organizers: Dave Blackburn, Jill Goodwin, Gil Nelson, Emily Braker, Zach Randall, and Molly Phillips
Expected number of participants: 20

Overview

This is an invited workshop of fewer than 20 attendees and will focus on high level discussions of the solutions, challenges, and bottlenecks as well future enhancements and improvements required to advance the quality, imaging efficiency, and research use of fluid-preserved specimen images. This is not a typical iDigBio imaging training workshop. We hope to come out of this event with results to define the course forward for expanding and enhancing the use of fluid-preserved specimen images across all domains.

Logistic Information

Airport: Gainesville Regional Airport
Airport transportation: hotel shuttle, taxi, uber, lyft
Workshop hotel: Holiday Inn (walking distance of workshop venue)
Workshop venue: Room 371, Dickinson Hall, University of Florida
Invited participant support: Hotel cost covered; flight and per diem expenses reimbursed.

Agenda

Agenda details may be updated, even during the workshop.

Day 1
TIME
7:00-8:00 Breakfast on your own
8-8:30 Check in, coffee
8:30 Workshop Overview and Framing Gil Nelson
8:50 A Glimpse at the Future of Specimen Imaging Dave Blackburn
9:10 Photogrammetry Nelson Rios
9:30 3D Surface Scanning Ed Stanley
9:50-10:30 Brainstorm session #1: Sky's the limit--free of financial and other constraints: Aspirations outside the box for imaging technologies, challenges, and protocols (artificial intelligence? Machine learning? Conveyor belts?) Emily Braker
10:30-11:00 Break
11:00-11:45 Brainstorm session #2: Current Challenges and Bottlenecks for Creating and Using Images Gil Nelson
11:45-1:00 Lunch (provided)
1:00-1:45 Brainstorm session #3: Image Quality and Research Uses Zach Randall
1:45-2:30 Brainstorm session #4: Non-research uses of Images (Outreach, Education) Molly Phillips
2:30-3:15 Brainstorm session #5: Enriching Data through Trait Extraction from Images Jill Goodwin
3:15-3:45 Break
3:45-4:15 Brainstorm session #6: Imaging methods: Selecting the Best Option Zach Randall
4:15-5:00 Daily Reflection and Synthesis: What have we Learned? Top ten Ideas? Gil Nelson
Day 2
TIME
7:30 - 8:30 Breakfast on your own
8:30-9:00 Coffee
9:00-10:30 CT Scanning and 2D imaging lab visits Dave Blackburn, Ed Stanley, Zach Randall
10:30-11:00 Coffee break
11:00-11:45 Create outline for workshop publication Dave Blackburn
11:45-1:00 Lunch (provided)
1:00-3:00 Each of three breakout groups works on one or more sections from the outline Group nominated/selected leader and scribe
3:00-3:30 Coffee break
3:30-5:00 Report outs, concluding perspectives, wrap up Emily Braker, Dave Blackburn, Gil Nelson
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