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Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease: Difference between revisions
Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease (view source)
Revision as of 19:45, 24 July 2023
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|Short code for this page: https://bit.ly/TPTiDigBio | |||
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The Terrestrial Parasite Tracker Thematic Collection Network (TPT-TCN) will digitize over one million arthropod specimens representing species that are significant parasites and disease vectors of vertebrates in the United States. This digitization effort will integrate millions of vertebrate host records with vector and disease monitoring data shared by state and federal agency collaborators, creating a novel foundation for integrative, long-term research. This project is a collaboration of taxonomists and curators from vertebrate and invertebrate collections, as well as epidemiologists, ecologists, data-scientists, and biodiversity informatics specialists. This reach is further extended by the 26 collaborating research collections and other initiatives. This project will empower ongoing citizen science and public awareness campaigns with the tools to understand distribution changes of arthropod vectors and associated diseases due to environmental change and global movement. Public education initiatives include partnering with natural history museums to educate the public about parasites via science-focused lectures, exhibits, summer youth programs, informal presentations, and developing new online educational resources for teachers in underserved communities. All specimen images generated by this project will be used for the development of a rapid identification tool for parasites which will be made accessible through the internet and smartphone apps and shared with iDigBio (idigbio.org). The TPT-TCN will also develop and implement undergraduate teaching modules focused on data held in natural history collections. These modules will be disseminated to academic institutions across the United States and made available online. | The Terrestrial Parasite Tracker Thematic Collection Network (TPT-TCN) will digitize over one million arthropod specimens representing species that are significant parasites and disease vectors of vertebrates in the United States. This digitization effort will integrate millions of vertebrate host records with vector and disease monitoring data shared by state and federal agency collaborators, creating a novel foundation for integrative, long-term research. This project is a collaboration of taxonomists and curators from vertebrate and invertebrate collections, as well as epidemiologists, ecologists, data-scientists, and biodiversity informatics specialists. This reach is further extended by the 26 collaborating research collections and other initiatives. This project will empower ongoing citizen science and public awareness campaigns with the tools to understand distribution changes of arthropod vectors and associated diseases due to environmental change and global movement. Public education initiatives include partnering with natural history museums to educate the public about parasites via science-focused lectures, exhibits, summer youth programs, informal presentations, and developing new online educational resources for teachers in underserved communities. All specimen images generated by this project will be used for the development of a rapid identification tool for parasites which will be made accessible through the internet and smartphone apps and shared with iDigBio (idigbio.org). The TPT-TCN will also develop and implement undergraduate teaching modules focused on data held in natural history collections. These modules will be disseminated to academic institutions across the United States and made available online. | ||
The short url for this page is: https://bit.ly/TPTiDigBio | |||
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'''[http://parasitetracker.org/ Terrestrial Parasite Tracker]'''<br> | '''[http://parasitetracker.org/ Terrestrial Parasite Tracker]'''<br> | ||
The original project home page. | The original project home page. | ||
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'''[https://s2.parasitetracker.org/ Terrestrial Parasite Tracker Portal]'''<br> | '''[https://s2.parasitetracker.org/ Terrestrial Parasite Tracker Portal]'''<br> | ||
Data portal and newer project home page with links to assorted resources. | Data portal and newer project home page with links to assorted resources. | ||
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'''[https://www.globalbioticinteractions.org/parasitetracker/ GloBI Parasite Tracker]'''<br> | '''[https://www.globalbioticinteractions.org/parasitetracker/ GloBI Parasite Tracker]'''<br> | ||
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'''2022''' | '''2022''' | ||
* | * Durden, Lance A., Robinson, Chase, Cook, Joseph A., Bell, Kayce C., Nyamsuren, Batsaikhan, Greiman, Stephen E. Sucking Lice (Phthiraptera: Anoplura) Parasitizing Mongolian Rodents with the Description of a New Species of Hoplopleura from Mountain Voles (Alticola spp.). <i>Journal of Parasitology 108(4): 353-365 </i>. | ||
* Peterson, Dianne. A diverse flea (Siphonaptera) assemblage from the small mammals of central New Mexico. <i>University of New Mexico: MS Thesis.</i> | |||
* Poelen, Jorrit | * Poelen, Jorrit. On Interpreting Biotic Association Records. Zenodo. https://doi.org/10.5281/zenodo.6686306 | ||
*Tucker, Erika, | * Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., Light, Jessica E., Tucker, Erika M., Demboski, John R, McElrath, Tommy, Grinter, Christopher C, Diaz-Bastin, Rachel, Bush, Sarah E, Delapena, Robin, Cook, Joseph, Gall, Lawrence F., Whiting, Michael F, Clark, Shawn M, Cameron, Stephen L, Replogle, Charla R, Rund, Samuel S.C., Young, Daniel, Brabant, Craig, Sullivan, Kathryn, Turcatel, Maureen, Shuman Baquiran, Rebekah, Albion, Zoe, Austin, Kyhl, Rubinoff, Dan, Cognato, Anthony I., Caywood, Alyssa, Colby, Julia, Allen, Julie, Zaspel, Jennifer M. (2022). Terrestrial Parasite Tracker indexed biotic interactions and review summary (0.6) [Data set]. <i>Zenodo.</i> [https://doi.org/10.5281/zenodo.6761707 doi: 10.5281/zenodo.6761707]. | ||
* Dr. Nicolas J. Dowdy, Dr. Erika M. Tucker, Jorrit Poelen, Dr. Vijay Barve, Teresa Mayfield-Meyer, Kathryn Sullivan, & Dr. Jennifer M. Zaspel | *Tucker, Erika, Poelen, Jorrit, & Seltmann, Katja (2022). A lesson plan for better understanding entomological specimen interaction data in collections by NSF funded Terrestrial Parasite Tracker Thematic Collection Network [website: https://www.globalbioticinteractions/ecm-workshop/]. <i>Zenodo.</i> [https://doi.org/10.5281/zenodo.6704580 doi: 10.5281/zenodo.6704580]. | ||
* Dr. Nicolas J. Dowdy, Dr. Erika M. Tucker, Jorrit Poelen, Dr. Vijay Barve, Teresa Mayfield-Meyer, Kathryn Sullivan, & Dr. Jennifer M. Zaspel. njdowdy/tpt-taxonomy: TPT Taxonomic Resource v2.0.0 (v2.0.0) [Data set]. <i>Zenodo.</i> [https://doi.org/10.5281/zenodo.7215550 doi: 10.5281/zenodo.7215550]. | |||
'''2021''' | '''2021''' | ||
* | * Dowdy, N.J., Barve, V., Mayfield-Meyer, T., Sullivan, K., & Zaspel, J.M. njdowdy/tpt-taxonomy: TPT Taxonomic Resource v1.0.3 (v1.0.3) [Data set]. <i>Zenodo.</i> [https://doi.org/10.5281/zenodo.5562742 doi: 10.5281/zenodo.5562742]. | ||
* Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., Light, Jessica E., & Tucker, Erika M. Terrestrial Parasite Tracker indexed biotic interactions and review summary (0.5) [Data set]. <i> Zenodo. </i> [https://doi.org/10.5281/zenodo.5572874 doi: 10.5281/zenodo.5572874]. | |||
* Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., Light, Jessica E., & Tucker, Erika M | |||
'''2020''' | '''2020''' | ||
* Cook, Joseph A | * Cook, Joseph A, Arai, Satoru, Armién, Blas, Bates, John, Bonilla, Carlos A, Cortez, Maria Beatriz, Dunnum, Jonathan L, Ferguson, Adam W, Johnson, Karl M, Khan, Faisal Ali, Paul, Deborah L, Reeder, DeeAnn M, Revelez, Marcia A, Simmons, Nancy B, Thiers, Barbara M, Thompson, Cody W, Upham, Nathan S, Vanhove, Maarten P, Webala, Paul W, Weksler, Marcelo, Yanagihara, Richard, Soltis, Pamela S. Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases. <i>BioScience 70(7): 531-534.</i> [https://academic.oup.com/bioscience/article/70/7/531/5857068 doi: 10.1093/biosci/biaa064] | ||
* Poelen, Jorrit H., Seltmann, Katja C., & Campbell, Mariel | * Poelen, Jorrit H., Seltmann, Katja C., & Campbell, Mariel. Terrestrial Parasite Tracker indexed biotic interactions and review summary (Version 0.2) [Data set]. <i>Zendo. </i>[https://zenodo.org/record/3778773#.Y5CxnOzMI_U doi: 10.5281/zenodo.3778773]. | ||
* Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., & Tucker, Erika M | * Poelen, Jorrit H., Seltmann, Katja C., Campbell, Mariel, Orlofske, Sarah A., & Tucker, Erika M. Terrestrial Parasite Tracker indexed biotic interactions and review summary (Version 0.1) [Data set]. <i>Zendo.</i> [https://zenodo.org/record/3685365#.Y5CyCOzMI_U doi: 10.5281/zenodo.3685365]. | ||
* Seltmann KC, Poelen JH, Sullivan K, Zaspel J. Making Parasite-Host Associations Visible using Global Biotic Interactions. <i>Biodiversity Information Science and Standards 4: e58985</i>. [https://biss.pensoft.net/article/58985/ DOI: 10.3897/biss.4.58985]. | * Seltmann KC, Poelen JH, Sullivan K, Zaspel J. Making Parasite-Host Associations Visible using Global Biotic Interactions. <i>Biodiversity Information Science and Standards 4: e58985</i>. [https://biss.pensoft.net/article/58985/ DOI: 10.3897/biss.4.58985]. | ||
* Zaspel, Jennifer M | * Zaspel, Jennifer M, Allen, Julie M, Tyrrell, Christopher D, Lemoine, Nate, Jacobus, Luke M, Klem, Crystal, Goodwin, Jillian, Bates, John M. Human Health, Interagency Coordination, and the Need for Biodiversity Data. <i>BioScience 70(7): 527-527.</i> [https://academic.oup.com/bioscience/article/70/7/527/5861522 doi:10.1093/biosci/biaa065] | ||
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=== Professional Presentations & Symposia === | === Professional Presentations & Symposia === | ||
'''2023''' | |||
* Barve, V. R scripts for nomenclature cleaning. <i>National Native Bee Monitoring RCN Data Workshop</i>. [https://www.youtube.com/watch?v=oEbOjtORQmo Recording]. Remote. | |||
* Jadin, R.C., King, S., Gausmann, C.R., Leon, J., Orlofske, S.A. Parasites lost (and found): Filling in gaps of parasite distributions with newly digitized collections. Poster. <i>American Society of Parasitologists annual meeting</i>. Texas A&M, College Station, Texas. [https://www.bio.tamu.edu/wp-content/uploads/2022/06/ASP-2022-Booklet-Final-B.pdf Program & Abstracts]. | |||
* Light, Jessica. Terrestrial Parasite Tracker: Digitizing collections to trace parasite-host associations and predict spread of vector-borne disease. <i>4th International Congress on Parasites of Wildlife</i>. Kruger National Park, South Africa. | |||
* Osgood, L., Meyer, R., Leon, J., Cayetano, I., Gausmann, C., Orlofske, S. Behind closed doors: Digitizing the Stephen J. Taft parasitology collection. Poster. <i>Annual Midwestern Conference of Parasitologists</i>. Touch of Nature Education Center, Makanda, IL. [https://parasitology.siu.edu/Images/AMCOP%2073%20Booklet%20(OFFICIAL).pdf Program & Information]. | |||
* Osgood, H., Meyer, R., Leon, J., Cayetano, I., Gausmann, C. Behind closed doors: Digitizing the Steven J. Taft parasite collection. <i>College of Letters and Science Undergraduate Research symposium</i>. University of Wisconsin-Stevens Point, Stevens Point, WI. [https://www3.uwsp.edu/cols/Documents/ResearchSymposium/UGRS%20Full%20Presentations%20Booklet.pdf Program]. | |||
* Poelen, J. Association data and Global Biotic Interactions. <i>Entomological Collections Management Workshop</i>. Cleveland, OH. | |||
* Poelen, J. Global Biotic Interactions. <i>National Native Bee Monitoring RCN Data Workshop</i>. [https://www.youtube.com/watch?v=lWZXEGZgcZ8 Recording]. Remote. | |||
* Seltmann, K. Active Entomology TCNs (TPT, Big-Bee). <i>Entomological Collections Management Workshop</i>. Cleveland, OH. | |||
* Seltmann, K. and Paul, D. Data Life Cycle. <i>National Native Bee Monitoring RCN Data Workshop</i>. [https://www.youtube.com/watch?v=TAw02qohJoI Recording]. Remote. | |||
* Tucker, E. M. Responsible use of Museum Specimens & Their Data. <i>National Native Bee Monitoring RCN Data Workshop</i>. [https://www.youtube.com/watch?v=V2PvOmzSQrA Recording]. Remote. | |||
* Zaspel, J., Tucker, E.M. Interaction Data Interpretation Workshop. <i>Entomological Collections Management Workshop</i>. Cleveland, OH. | |||
* Zaspel, J. Introduction and TPT. <i>Entomological Collections Management Workshop</i>. Cleveland, OH. | |||
* Zaspel, J. Strategic Planning & Fund raising for Curation & Digitization. <i>Entomological Collections Management Workshop</i>. Cleveland, OH. | |||
'''2022''' | '''2022''' | ||
* Albion, Z., Bailey, C. Empowering volunteers in a large scale digitization effort; highlights from Field Museum’s Terrestrial Parasite Tracker project. <i>Entomological Collections Network</i>. Vancouver, BC. | |||
* Allen, Julie. (Re)using Published Georeferences with Biodiversity Enhanced Location Services (BELS). <i>Entomological Collections Management Workshop</i>. Remote. | * Allen, Julie. (Re)using Published Georeferences with Biodiversity Enhanced Location Services (BELS). <i>Entomological Collections Management Workshop</i>. Remote. | ||
* Bush, S. Ecology and Evolution of Grooming Behavior. Kenya, Africa. | * Bush, S. Ecology and Evolution of Grooming Behavior. Kenya, Africa. | ||
* Caywood, A., Buntin, M., Julia, J., Tyrell, C., Zaspel, J. Show and tell: Finding other ways of knowing in digitized specimens. Poster.<i>Entomological Collections Network</i>. Vancouver, BC. | |||
* Deczynski, A., Caterino, M. Ferro, M.L. The Terrestrial Parasite Tracker project and beyond: A decade of digitization at the CUAC. <i>Entomological Collections Network</i>. Vancouver, BC. | |||
* Hart, L.V., Kohler, M., Mason, S., Struckhoff, E., McElrath, T. Got parasites? We do! The Illinois Natural History Survey’s workflows for the Terrestrial Parasite Tracker TCN using TaxonWorks. Poster. <i>Entomological Collections Network</i>. Vancouver, BC. | |||
* Lily V. Hart, Michelle Kohler, Sara Mason, Emily Struckhoff & Tommy Mcelrath. Got parasites? We do! The Illinois Natural History Survey’s workflows for the Terrestrial Parasite Tracker TCN using TaxonWorks. <i>Entomological Collections Network</i>. [https://ecnweb.net/welcome/meeting/ecn-2022/poster-hall/ Abstract]. [https://i0.wp.com/ecnweb.net/wp-content/uploads/2022/11/Poster-3.png?w=1382&ssl=1 Poster]. | * Lily V. Hart, Michelle Kohler, Sara Mason, Emily Struckhoff & Tommy Mcelrath. Got parasites? We do! The Illinois Natural History Survey’s workflows for the Terrestrial Parasite Tracker TCN using TaxonWorks. <i>Entomological Collections Network</i>. [https://ecnweb.net/welcome/meeting/ecn-2022/poster-hall/ Abstract]. [https://i0.wp.com/ecnweb.net/wp-content/uploads/2022/11/Poster-3.png?w=1382&ssl=1 Poster]. | ||
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* Tucker, E., Zaspel, J. Terrestrial Parasite Tracker (TPT) Beyond the TCN: Project Sustainability. <i>Entomological Collections Network</i>. Vancouver, BC. | * Tucker, E., Zaspel, J. Terrestrial Parasite Tracker (TPT) Beyond the TCN: Project Sustainability. <i>Entomological Collections Network</i>. Vancouver, BC. | ||
* Tucker, E., Poelen, J., Seltmann, K., Sullivan, K., Zaspel, J. Interaction Data Interpretation Workshop. <i>Entomological Collections Management Workshop</i>. Tempe, AZ | * Tucker, E., Poelen, J., Seltmann, K., Sullivan, K., Zaspel, J. Interaction Data Interpretation Workshop. <i>Entomological Collections Management Workshop</i>. Tempe, AZ. | ||
* Tucker, E.M., Poelen, J. The Interaction Data Interpretation Workshop (2022). <i>Entomological Collections Management Workshop</i>. Hybrid: Remote/Tempe, Arizona. https://www.globalbioticinteractions.org/ecm-workshop/ | * Tucker, E.M., Poelen, J. The Interaction Data Interpretation Workshop (2022). <i>Entomological Collections Management Workshop</i>. Hybrid: Remote/Tempe, Arizona. https://www.globalbioticinteractions.org/ecm-workshop/ | ||
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''' Interviews & Press Releases ''' | ''' Interviews & Press Releases ''' | ||
* Brabant, C. (2023) Editor: Bradford, B. [https://entomology.wisc.edu/2023/04/17/entomology-digest-spring-2023/ Wisconsin Insect Research Collection]. <i>Entomology Digest: Spring 2023.</i> | |||
* Carr, S. (2019) [http://news.unm.edu/news/unm-joins-multi-institutional-effort-to-create-terrestrial-parasite-tracker-project UNM joins multi-institutional effort to create Terrestrial Parasite Tracker project]. <i>UNM Newsroom</i>. | * Carr, S. (2019) [http://news.unm.edu/news/unm-joins-multi-institutional-effort-to-create-terrestrial-parasite-tracker-project UNM joins multi-institutional effort to create Terrestrial Parasite Tracker project]. <i>UNM Newsroom</i>. | ||
* Lippi, Catherine A., Rund, Samuel S.C., Ryan, Sadie J. (2023) Characterizing the Vector Data Ecosystem. <i>Journal of Medical Entomology, 60(2): 247–254.</i> [https://doi.org/10.1093/jme/tjad009 doi: 10.1093/jme/tjad009]. | |||
* McElrath, T. (2023) [https://sib.illinois.edu/entomology/newsletter/Newsletter_2021-2022.pdf Affiliates and Associates]. <i>Department of Entomology, University of Illinois Urbana-Champaign, Entomology Newsletter: 2021-2022, pg. 22.</i> | |||
* Verdier, J. (2020) [https://www.eurekalert.org/news-releases/567392 Leveraging biodiversity science infrastructure in the COVID-19 era]. American Institute of Biological Sciences (AIBS) News Release. <i>BioScience.</i> (quotes: Jennifer M. Zaspel and colleagues; Joseph A. Cook and colleagues). | * Verdier, J. (2020) [https://www.eurekalert.org/news-releases/567392 Leveraging biodiversity science infrastructure in the COVID-19 era]. American Institute of Biological Sciences (AIBS) News Release. <i>BioScience.</i> (quotes: Jennifer M. Zaspel and colleagues; Joseph A. Cook and colleagues). | ||
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* Tucker, E. (2022) [https://bug.news/blog/other/american-dog-tick/ Tik-Tok, Tick-Talk – American Dog Tick]. <i>Bug News</i>. | * Tucker, E. (2022) [https://bug.news/blog/other/american-dog-tick/ Tik-Tok, Tick-Talk – American Dog Tick]. <i>Bug News</i>. | ||
* Tucker, E.M. (2022). [https://bug.news/blog/other/tapeworm/ The wrong kind of worms - Tapeworms :(]. <i>Bug News.</i> | |||
* (2020) [https://www.ccber.ucsb.edu/news-events/tracking-parasites Tracking Parasites (A reposting of Global Biotic Interactions Article: Tracking Parasites)]. <i>Katja Seltmann's blog</i>. | * (2020) [https://www.ccber.ucsb.edu/news-events/tracking-parasites Tracking Parasites (A reposting of Global Biotic Interactions Article: Tracking Parasites)]. <i>Katja Seltmann's blog</i>. | ||