BioDigiCon 2022: Difference between revisions

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'''Registration is open!''' Please register via Eventbrite: https://www.eventbrite.com/e/2022-biodigicon-tickets-367104919697
'''Registration is open!''' Please register via Eventbrite: https://www.eventbrite.com/e/2022-biodigicon-tickets-367104919697


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=== Event Overview ===
!!needs editing [https://www.idigbio.org/wiki/images/3/3d/BioDigi2021_EventOverview.pdf BioDigi2021 Event Overview PDF]
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=== Collaborative Notes ===
!!needs editing [https://docs.google.com/document/d/1MHWVhcUzBmJT3tP14fOojVHQWPkTENm3PN5-k1Q5w0s/edit?usp=sharing Feel free to use this document for notes]
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=== Abstracts ===
=== Abstracts ===
*[https://docs.google.com/document/d/1Qooo7bKfTC8mGXAct2xhjrhg1nWZFHPrtJBJ_n6oLds/edit?usp=sharing Click here to view Abstracts for Lightning Talks, Discussion sessions, & Workshops]
*[https://docs.google.com/document/d/1Qooo7bKfTC8mGXAct2xhjrhg1nWZFHPrtJBJ_n6oLds/edit?usp=sharing Click here to view Abstracts for Lightning Talks, Discussion sessions, & Workshops]
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<br>
<br>
'''''Presenters have submitted pre-recorded presentations for the option to watch asynchronously but all sessions will take place live.'''''
'''''Presenters have submitted pre-recorded presentations for the option to watch asynchronously but all sessions will take place live.'''''
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<br>
=== Abstracts ===
=== Post Conference Survey ===
!!needs editing [https://docs.google.com/spreadsheets/d/1Cc8XjdeLYsfcG-ljSsDga1Y9NtUAhKJjW2B2AxJWLFY/edit?usp=sharing Oral Presentation Abstracts]
We would love your feedback from the conference: <br> [https://ufl.qualtrics.com/jfe/form/SV_1TU30gB6fOvx0we Please click here to complete the survey]
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=== Conference Agenda ===
=== Conference Agenda ===
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|+ style="font-size: 120%; background-color:lightgray;"|iDigBio Orientation
|+ style="font-size: 120%; background-color:lightgray;"|iDigBio Orientation
|-
|-
! style="width:10%;"|Time EDT !! style="width:90%;"|[https://ufl.zoom.us/webinar/register/WN_Wz1eR2jBSwCRsxobGM1jEw Click to join Zoom, Room 1]
! style="width:10%;"|Time EDT !! style="width:90%;"|[https://drive.google.com/file/d/1cY0kkSbxYVfwnVVSbZtLuIQiykpZDfo-/view?usp=sharing iDigBio Orientation Recording]
|-
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| 10:30 - 10:50    || iDigBio: Intro & What's New
| 10:30 - 10:50    || iDigBio: Intro & What's New
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|+ style="font-size: 120%; background-color:lightgray;"|TCN Presentations <br>  
|+ style="font-size: 120%; background-color:lightgray;"|TCN Presentations <br>  
|+ style="font-size: 90%; background-color:lightgray;"|
|+ style="font-size: 90%; background-color:lightgray;"|
Each Thematic Collections Network (TCN) is a network of institutions with a strategy for digitizing information that addresses a particular research theme, such as impacts of climate change or biota of a region. Once digitized, data are easily accessed and available for other research and educational use. Other institutions and collections may join an existing TCN as a Partner to Existing Network (PEN).
 
|-
|-
! style="width:10%;"|Time EDT !! style="width:45%;"|[https://ufl.zoom.us/webinar/register/WN_Wz1eR2jBSwCRsxobGM1jEw Click to join Zoom, Room 1] !! style="width:45%;"|[https://ufl.zoom.us/j/95949400366 Click to join Zoom, Room 2]
! style="width:10%;"|Time EDT !! style="width:45%;"|[https://drive.google.com/file/d/1toXNMbFJsd5v-nCLj_eyl5wKjGYi34ul/view?usp=sharing Recording for Day 1, Room 1] || [https://ufl.zoom.us/rec/share/Qi5f40E5uqYc2JINiRmKZMAnAtlraN_SNmDYnwnysZGKYqxnGyuA7fT12yhjaLVa.J2PErojyHAJkVkAu Recording for Day 1, Room 2]
|-
|-
| 1:00 - 1:15    ||  ||  
| 1:00 - 1:15    ||  ||  
|-
|-
| 1:15 - 1:30    || Digitization and Enrichment of U.S. Herbarium Data from Tropical Africa to Enable Urgent Quantitative Conservation Assessments (Peterson)                   ||  
| 1:15 - 1:30    || Digitization and Enrichment of U.S. Herbarium Data from Tropical Africa to Enable Urgent Quantitative Conservation Assessments (Peterson)<br> [https://drive.google.com/file/d/1zd4P5l7IUWsZAIDWqVMIxincadzV3HeK/view?usp=sharing Pre-recorded presentation]                      ||  
|-
|-
| 1:35 - 1:45    || [https://parasitetracker.org/ Terrestrial Parasite Tracker] (Tucker/Zaspel)   || [https://www.idigbio.org/wiki/index.php/TCN:_Collaborative_Research:_Bringing_Asia_to_digital_life:_mobilizing_underrepresented_Asian_herbarium_collections_in_the_US_to_propel_biodiversity_discovery#Project_Websites_.26_Social_Media Bringing Asian plant diversity to digital life ] (Davis)
| 1:35 - 1:45    || [https://parasitetracker.org/ Terrestrial Parasite Tracker] (Tucker/Zaspel) <br> [https://drive.google.com/file/d/1HWG1FcI2U9uy7coUGNPzaliDoHs-iMbL/view?usp=sharing Pre-recorded Presentation] ||
|-
|-
| 1:45 - 1:55    || [https://www.idigbio.org/wiki/index.php/OVert:_Open_Exploration_of_Vertebrate_Diversity_in_3D oVert: openVertebrate] (Blackburn) <br> [https://drive.google.com/file/d/1luGr3EccYIwbqNIOIauIr6MA82Cd0Dzr/view?usp=sharing Pre-recorded presentation]    || [http://big-bee.net/ Extending Anthophila research through image and trait digitization: Big-Bee] (Seltmann) <br> [https://drive.google.com/file/d/1x1oQXsGo6G8lcgbBtQK77PHKcxlaKaCA/view?usp=sharing Pre-recorded presentation]
| 1:45 - 1:55    || [https://www.idigbio.org/wiki/index.php/OVert:_Open_Exploration_of_Vertebrate_Diversity_in_3D oVert: openVertebrate] (Blackburn) <br> [https://drive.google.com/file/d/1luGr3EccYIwbqNIOIauIr6MA82Cd0Dzr/view?usp=sharing Pre-recorded presentation]    || [http://big-bee.net/ Extending Anthophila research through image and trait digitization: Big-Bee] (Seltmann) <br> [https://drive.google.com/file/d/1x1oQXsGo6G8lcgbBtQK77PHKcxlaKaCA/view?usp=sharing Pre-recorded presentation]
|-
|-
| 1:55 - 2:05    || [https://www.idigbio.org/wiki/index.php/Lepidoptera_of_North_America_Network Lepidoptera of North America Network:LepNet]/ [https://scan-all-bugs.org/ Symbiota2 Collections of Arthropods Network: SCAN] (Cobb)      ||[https://www.idigbio.org/wiki/index.php/Building_a_global_consortium_of_bryophytes_and_lichens:_keystones_of_cryptobiotic_communities Building a global consortium of bryophytes and lichens: keystones of cryptobiotic communities: GLOBAL] (Budke) <br> [https://drive.google.com/file/d/1jL6pGeHxyIaAb0EjC4fZMin_dpcHg8V_/view?usp=sharing Pre-recorded presentation]
| 1:55 - 2:05    || [https://www.idigbio.org/wiki/index.php/Lepidoptera_of_North_America_Network Lepidoptera of North America Network:LepNet]/ [https://scan-all-bugs.org/ Symbiota2 Collections of Arthropods Network: SCAN] (Cobb)      ||[https://www.idigbio.org/wiki/index.php/Building_a_global_consortium_of_bryophytes_and_lichens:_keystones_of_cryptobiotic_communities Building a global consortium of bryophytes and lichens: keystones of cryptobiotic communities: GLOBAL] (Budke) <br> [https://drive.google.com/file/d/1jL6pGeHxyIaAb0EjC4fZMin_dpcHg8V_/view?usp=sharing Pre-recorded presentation]
|-
| ''2:05 - 2:15'' || ''Break''              || ''Break''
|-
|-
| 2:15 - 2:25    || [https://www.idigbio.org/wiki/index.php/Mobilizing_Millions_of_Marine_Mollusks_of_the_Eastern_Seaboard Mobilizing Millions of Marine Mollusks of the Eastern Seaboard:ESB] (Bieler)  <br> [https://drive.google.com/file/d/1EaJSPR5gXn__SrTksZAf6WQpPl-scKIL/view?usp=sharing Pre-recorded Presentation]                || [https://www.torcherbaria.org/ The Texas Oklahoma Regional Consortium of Herbaria: TORCH] (Barroso) <br> [https://drive.google.com/file/d/1n0A15tYeaFz-49D2YiL3LtmnngXWm-oZ/view?usp=sharing Pre-recorded Presentation]
| 2:15 - 2:25    || [https://www.idigbio.org/wiki/index.php/Mobilizing_Millions_of_Marine_Mollusks_of_the_Eastern_Seaboard Mobilizing Millions of Marine Mollusks of the Eastern Seaboard:ESB] (Bieler)  <br> [https://drive.google.com/file/d/1EaJSPR5gXn__SrTksZAf6WQpPl-scKIL/view?usp=sharing Pre-recorded Presentation]                || [https://www.torcherbaria.org/ The Texas Oklahoma Regional Consortium of Herbaria: TORCH] (Barroso) <br> [https://drive.google.com/file/d/1n0A15tYeaFz-49D2YiL3LtmnngXWm-oZ/view?usp=sharing Pre-recorded Presentation]
|-
|-
| 2:25 - 2:35    || [https://www.digin-tcn.org/ Documenting Marine Biodiversity Through Digitization of Invertebrate Collections: DigIn] (Wetzer)          || [https://www.capturingcaliforniasflowers.org/ Capturing California's Flowers: Using Digital Images to Investigate Phenological Change in a Biodiversity Hotspot] (Yost)
| 2:25 - 2:35    || [https://www.digin-tcn.org/ Documenting Marine Biodiversity Through Digitization of Invertebrate Collections: DigIn] (Westover)          || [https://www.capturingcaliforniasflowers.org/ Capturing California's Flowers: Using Digital Images to Investigate Phenological Change in a Biodiversity Hotspot] (Yost)
|-
|-
| ''2:35 - 2:45'' || ''Break''              || ''Break''
| ''2:35 - 2:45'' || ''Break''              || ''Break''
|-
|-
| 2:45 - 2:55    || [https://www.idigbio.org/wiki/index.php/Enhancing_Access_to_Taxonomic_and_Biogeographical_Data_to_Stem_the_Tide_of_Extinction_of_the_Highly_Imperiled_Pacific_Island_Land_Snails Enhancing Access to Taxonomic and Biogeographical Data to Stem the Tide of Extinction of the Highly Imperiled Pacific Island Land Snails: PILSBRY] (Yeung)         || [https://www.idigbio.org/wiki/index.php/The_Pteridological_Collections_Consortium:_An_integrative_Approach_to_Pteridophyte_Diversity_Over_the_Last_420_Million_Years The Pteridological Collections Consortium: An integrative Approach to Pteridophyte Diversity Over the Last 420 Million Years: PCC] (Rothfels)
| 2:45 - 2:55    || [https://www.idigbio.org/wiki/index.php/Enhancing_Access_to_Taxonomic_and_Biogeographical_Data_to_Stem_the_Tide_of_Extinction_of_the_Highly_Imperiled_Pacific_Island_Land_Snails Enhancing Access to Taxonomic and Biogeographical Data to Stem the Tide of Extinction of the Highly Imperiled Pacific Island Land Snails: PILSBRY] (Yeung) <br> [https://drive.google.com/file/d/1ZXIY0HnZgratBr1uZDe-mkVUWv1fgiZC/view?usp=sharing  Pre-recorded Presentation]        || [https://www.idigbio.org/wiki/index.php/The_Pteridological_Collections_Consortium:_An_integrative_Approach_to_Pteridophyte_Diversity_Over_the_Last_420_Million_Years The Pteridological Collections Consortium: An integrative Approach to Pteridophyte Diversity Over the Last 420 Million Years: PCC] (Rothfels)
|-
|-
| 3:05 - 3:15    || [https://www.idigbio.org/wiki/index.php/Digitizing_%22Endless_Forms%22:_Facilitating_Research_on_Imperiled_Plants_with_Extreme_Morphologies Digitizing "Endless Forms": Facilitating Research on Imperiled Plants with Extreme Morphologies: Endless Forms] (Pace)    || [https://www.idigbio.org/wiki/index.php/The_Key_to_the_Cabinets:_Building_and_Sustaining_a_Research_Database_for_a_Global_Biodiversity_Hotspot The Key to the Cabinets: Building and Sustaining a Research Database for a Global Biodiversity Hotspot: SERNEC] (Denslow)
| ''2:55 - 3:05'' || ''Break''              || ''Break''
|-
|-
| 3:15 - 3:25     ||                         || [https://www.idigbio.org/wiki/index.php/Enhancing_the_SoRo_TCN_with_collections_of_taxonomic,_geographic,_and_historic_significance_from_the_Rancho_Santa_Ana_Botanic_Garden_Herbarium Using Herbarium Data to Document Plant Niches in the High Peaks and High Plains of the Southern Rockies - Past, Present, and Future: SoRo] (Allen)
| 3:05 - 3:15     || [https://www.idigbio.org/wiki/index.php/Digitizing_%22Endless_Forms%22:_Facilitating_Research_on_Imperiled_Plants_with_Extreme_Morphologies Digitizing "Endless Forms": Facilitating Research on Imperiled Plants with Extreme Morphologies: Endless Forms] (Pace)  <br> [https://drive.google.com/file/d/1W80VipKehROnFOlYBuKBxU-5DG34ytaR/view?usp=sharing Pre-recorded Presentation]  || [https://www.idigbio.org/wiki/index.php/The_Key_to_the_Cabinets:_Building_and_Sustaining_a_Research_Database_for_a_Global_Biodiversity_Hotspot The Key to the Cabinets: Building and Sustaining a Research Database for a Global Biodiversity Hotspot: SERNEC] (Denslow) <br> [https://drive.google.com/file/d/180CBQC7R6wWa8l2H4MoZsZ4g6otgrjn6/view?usp=sharing Pre-recorded Presentation]
|-
|-
| 3:25 - 3:35     ||                        ||  
| 3:15 - 3:25     ||                        || [https://www.idigbio.org/wiki/index.php/Enhancing_the_SoRo_TCN_with_collections_of_taxonomic,_geographic,_and_historic_significance_from_the_Rancho_Santa_Ana_Botanic_Garden_Herbarium Using Herbarium Data to Document Plant Niches in the High Peaks and High Plains of the Southern Rockies - Past, Present, and Future: SoRo] (Allen) <br> [https://drive.google.com/file/d/1Kotj_tzDh3V-bsMcV4tBV9s8EKmFha5y/view?usp=sharing Pre-recorded Presentation]
|-
|-
| 3:35 - 3:45     ||                        ||  
| 3:25 - 3:35     ||                        || [https://www.idigbio.org/wiki/index.php/TCN:_Collaborative_Research:_Bringing_Asia_to_digital_life:_mobilizing_underrepresented_Asian_herbarium_collections_in_the_US_to_propel_biodiversity_discovery#Project_Websites_.26_Social_Media Bringing Asian plant diversity to digital life] (Davis)
|-
|-
| 3:45 - 4:15    || Q & A / Open Discussion ||  
| ''3:35 - 4:00'' || Q & A / Open Discussion / Wrap-Up          ||  
|-
|-
| 4:15 - 4:30    || Wrap-Up                ||
|}
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|+ style="font-size: 120%; background-color:lightgray;"|Visionary Plenary
|+ style="font-size: 120%; background-color:lightgray;"|Visionary Plenary
|-
|-
! style="width:10%;"|Time EDT !! style="width:90%;"|[https://ufl.zoom.us/webinar/register/WN_Wz1eR2jBSwCRsxobGM1jEw Click to join Zoom, Room 1]
! style="width:10%;"|Time EDT !! style="width:90%;"|[https://drive.google.com/file/d/1R6mHkbasBK1FnV_1eg1JWQT35B5ktUFz/view?usp=sharing Plenary Speaker Recording]
|-
|-
| 10:00 - 10:10    || Welcome: Gil Nelson<br>Introduction of speaker: Pam Soltis
| 10:00 - 10:10    || Welcome: Gil Nelson<br>Introduction of speaker: Pam Soltis
|-
|-
| 10:10 - 10:30    || Visionary Plenary: Dena Smith
| 10:10 - 10:30    || Visionary Plenary: BIODIGICON 2022: Impacts and Importance of Biodiversity Digitization <br> Dena Smith, National Science Foundation
|}
|}
{| class="wikitable" style="width:85%;"
{| class="wikitable" style="width:85%;"
|+ style="font-size: 120%; background-color:lightgray;"|Biodiversity Digitization Lightning Presentations
|+ style="font-size: 120%; background-color:lightgray;"|Biodiversity Digitization Lightning Presentations
|-
|-
! style="width:10%;"|Time EDT !! style="width:30%;"|[https://ufl.zoom.us/webinar/register/WN_Wz1eR2jBSwCRsxobGM1jEw Click to join Zoom, Room 1] !! style="width:30%;"|[https://ufl.zoom.us/j/95949400366 Click to join Zoom, Room 2]!! style="width:30%;"|[https://ufl.zoom.us/j/91791327587 Click to join Zoom, Room 3]
! style="width:10%;"|Time EDT !! style="width:30%;"|[https://drive.google.com/file/d/1ktFx4kH56A-mauMTqN4LY1XTT2sC79Gl/view?usp=sharing Recording for Day 2, Room 1] !! style="width:30%;"|[https://ufl.zoom.us/rec/share/M8r7eBzwl7ho6cEEPdWvIxqe1va4d8wjVQFAMVAxsJKLphNNgi7qc4s_e2FSDU3z.pb_cD5IYlh46dQlA Recording for Day 2, Room 2] !! style="width:30%;"|[https://drive.google.com/file/d/1Q1UFG1scLRKf4fGGkj_CCzlxUvgVnPHM/view?usp=sharing Recording for Day 2, Room 3]
|-
|-
| 10:30 – 10:40    || Updates From the Biological Sciences Directorate at National Science Foundation <br> Steven E. Ellis, Division of Biological Infrastructure, National Science Foundation || Arctos: A Collaborative and Scalable Collection Management Solution <br> Emily Braker, University of Colorado Museum of Natural History|| Conveyor-driven mass-digitization of a million specimens does not cost a million <br>
| 10:30 – 10:40    || Updates From the Biological Sciences Directorate at National Science Foundation <br> Steven E. Ellis, Division of Biological Infrastructure, National Science Foundation || [https://drive.google.com/file/d/17ArMtp2_pQdy-g7uJV_3BKvn2Sr3THyn/view?usp=sharing Arctos: A Collaborative and Scalable Collection Management Solution] <br> Emily Braker, University of Colorado Museum of Natural History||  
Hannu Saarenmaa & Janne Karppinen, Bioshare Digitization Ltd, Ilomantsi, Finland
|-
|-


| 10:40 – 10:50|| US National Science Foundation TIP Program || Post Mortem It Sorts 'Em - Specify 6 and 7: An Overview from a User Perspective <br> Randy Singer, University of Michigan Museum of Zoology|| Using digitisation data to move a herbarium <br> Claire Brandenburger, National Herbarium of NSW, Australian Institute of Botanical Science; Hannah McPherson, National Herbarium of NSW; Andre Badiou, National Herbarium of NSW; Mel Wong, National Herbarium of NSW; Guy Lowe, National Herbarium of NSW.
| 10:40 – 10:50|| US National Science Foundation TIP Program || [https://drive.google.com/file/d/15l6lqHz_l1MTBJFnQ0UcDoWgcQlnX4Cu/view?usp=sharing Post Mortem It Sorts 'Em - Specify 6 and 7: An Overview from a User Perspective] <br> Randy Singer, University of Michigan Museum of Zoology|| [https://drive.google.com/file/d/1OHhQnK9iZ4J8a35DTWw95wg_xL6dUmrp/view?usp=sharing Using digitisation data to move a herbarium] <br> Claire Brandenburger, National Herbarium of NSW, Australian Institute of Botanical Science; Hannah McPherson, National Herbarium of NSW; Andre Badiou, National Herbarium of NSW; Mel Wong, National Herbarium of NSW; Guy Lowe, National Herbarium of NSW.
|-
|-
| 10:50 – 11:00    || CHIPS, Science, and Collections. <br> Reed S. Beaman, National Science Foundation  
| 10:50 – 11:00    || CHIPS, Science, and Collections. <br> Reed S. Beaman, National Science Foundation  
  || Symbiota: Managing and Mobilizing Biodiversity Data and Supporting Data Providers <br> Katie Pearson, Symbiota Support Hub; Edward Gilbert, Arizona State University; Nico Franz, Arizona State University; Jenn Yost, California Polytechnic State University; Samanta Orellana, Arizona State University; Greg Post, Arizona State || I’m Lichen These Images: Workflows established for the GLOBAL TCN project. <br> Laura Briscoe, New York Botanical Garden; Leanna McMillin, New York Botanical Garden
  || [https://drive.google.com/file/d/1XU3cUBXXtV0c-75mD-zleNEiT0WemBxr/view?usp=sharing Symbiota: Managing and Mobilizing Biodiversity Data and Supporting Data Providers] <br> Katie Pearson, Symbiota Support Hub; Edward Gilbert, Arizona State University; Nico Franz, Arizona State University; Jenn Yost, California Polytechnic State University; Samanta Orellana, Arizona State University; Greg Post, Arizona State || [https://drive.google.com/file/d/1QxjX028RzwrfKnv8EBoJvvHSehf3rK7G/view?usp=sharing I’m Lichen These Images: Workflows established for the GLOBAL TCN project.] <br> Laura Briscoe, New York Botanical Garden; Leanna McMillin, New York Botanical Garden
|-
|-
| 11:00 – 11:10  || US National Science Foundation Review, Q&A || EMu at the Smithsonian <br> Michelle Brown, Smithsonian National Museum of Natural History; Beth Gamble, NMNH; Ducky Nguyen, NMNH; Rebecca Snyder, NMNH || Digitisation & Mobilisation of CSIRO’s Biological Collections <br> Nicole Fisher, CSIRO; Pete Thrall, CSIRO
| 11:00 – 11:10  || US National Science Foundation Review, Q&A || [https://drive.google.com/file/d/11a4erUTm0GLejunMMmp0QlyzboifF3c4/view?usp=sharing EMu at the Smithsonian] <br> Michelle Brown, Smithsonian National Museum of Natural History; Beth Gamble, NMNH; Ducky Nguyen, NMNH; Rebecca Snyder, NMNH || [https://drive.google.com/file/d/1p6jU2UWVjAjZSKx2Fgv7CnWYsqXa0qSX/view?usp=sharing Digitisation & Mobilisation of CSIRO’s Biological Collections] <br> Nicole Fisher, CSIRO; Pete Thrall, CSIRO
|-
|-
| 11:10 – 11:20    || Specimen Digitization as Art <br> Zach Randall, Florida Museum of Natural History || 10 minutes of Q&A with database panel || A workflow for cleaning Notes from Nature data transcriptions <br> Peter Oboyski, Essig Museum of Entomology, UC Berkeley
| 11:10 – 11:20    || [https://drive.google.com/file/d/1f_LI7KaYffcV5OK6VODj3Dqmj6WuAuA8/view?usp=sharing Specimen Digitization as Art] <br> Zach Randall, Florida Museum of Natural History || 10 minutes of Q&A with database panel || [https://drive.google.com/file/d/1kKvB70BldC90ZvRny7lIm2m8L3OvqjpP/view?usp=sharing A workflow for cleaning Notes from Nature data transcriptions] <br> Peter Oboyski, Essig Museum of Entomology, UC Berkeley
|-
|-
| 11:20 – 11:30    || Histological slides and other sequentially sectioned objects in museums can be re-born digital 3D resources <br> Doug Boyer, Duke University (MorphoSource); Jocelyn Triplett, MorphoSource; Julie Winchester, MorphoSource; Jim Hanken, Harvard; Stephen Turney, Harvard; Brendan Haley, Harvard; Breda Zimkus, Harvard || Herbarium Pomeranicum <br> Marta Jarosińska, University of Gdańsk || New data models create new challenges for data sharing: looking at collections through the lens of events <br> Ely Wallis, Atlas of Living Australia, CSIRO
| 11:20 – 11:30    || [https://drive.google.com/file/d/1Iy-Z4SKMXUJ2Q_uQV34BplhYwokM61FU/view?usp=sharing Histological slides and other sequentially sectioned objects in museums can be re-born digital 3D resources] <br> Doug Boyer, Duke University (MorphoSource); Jocelyn Triplett, MorphoSource; Julie Winchester, MorphoSource; Jim Hanken, Harvard; Stephen Turney, Harvard; Brendan Haley, Harvard; Breda Zimkus, Harvard || [https://drive.google.com/file/d/1nzoEx6pEzBB19fxGd-RAp_ZcZUnqmhLp/view?usp=sharing Herbarium Pomeranicum] <br> Marta Jarosińska, University of Gdańsk || [https://drive.google.com/file/d/1-w1ApEpvCleUiBc3woxFHok5UeZxcIj6/view?usp=sharing New data models create new challenges for data sharing: looking at collections through the lens of events] <br> Ely Wallis, Atlas of Living Australia, CSIRO
|-
|-
| 11:30 – 11:40    || Extending the Digital Extended Specimen <br> Amanda Harmon, A.C. Moore Herbarium (USCH); Csilla Czako, South Carolina Department of Natural Resources; Avery Browning, University of South Carolina School of Earth, Ocean, and Environment; Herrick, Brown, A.C. Moore Herbarium (USCH)
| 11:30 – 11:40    || [https://drive.google.com/file/d/12fasHyr1AsvhZuQHIdQUdj-ichF1ZgYP/view?usp=sharing Extending the Digital Extended Specimen] <br> Amanda Harmon, A.C. Moore Herbarium (USCH); Csilla Czako, South Carolina Department of Natural Resources; Avery Browning, University of South Carolina School of Earth, Ocean, and Environment; Herrick, Brown, A.C. Moore Herbarium (USCH)
|| Tracking biotic association claims across platforms, collections, and institutions. <br> Jorrit Poelen, Ronin Institute / UC Santa Barbara Cheadle Institute for Biodiversity and Ecological Restoration
|| [https://doi.org/10.5281/zenodo.7120573 Tracking biotic association claims across platforms, collections, and institutions.] <br> Jorrit Poelen, Ronin Institute / UC Santa Barbara Cheadle Institute for Biodiversity and Ecological Restoration
|| Digitization and Dissemination of Phylogenetic Data: Using MorphoBank for Morphological Matrix Management <br> Brooke Long-Fox, Phoenix Bioinformatics; Kenzley Alphonse, Kenx Technology, Inc.; Maureen O’Leary, Stony Brook University; Tanya, Berardini, Phoenix Bioinformatics
|| [https://drive.google.com/file/d/1EMwnn1PpkaN6bUrFpL-gq0-MYL8mAwF8/view?usp=sharing Digitization and Dissemination of Phylogenetic Data: Using MorphoBank for Morphological Matrix Management] <br> Brooke Long-Fox, Phoenix Bioinformatics; Kenzley Alphonse, Kenx Technology, Inc.; Maureen O’Leary, Stony Brook University; Tanya, Berardini, Phoenix Bioinformatics
|-
|-
| 11:40  - 11:50 || || ||  
| ''11:40  - 11:50'' || ''Break'' || ''Break'' || ''Break''
|-
|-
| 11: 50 – 12:00    || A Fully Digitized Herbarium - Workflows to Keep Up 100% <br> Sylvia Orli, Smithsonian Institution; Ingrid Lin, Smithsonian Institution; Nathan Anderson, Smithsonian Institution|| ArcGIS Online for born digital data: our experience 6 months in <br>
| 11: 50 – 12:00    || [https://drive.google.com/file/d/1GMZOPZha27Nm-NMlgctIa7XyGX3eP7VU/view?usp=sharing A Fully Digitized Herbarium - Workflows to Keep Up 100%] <br> Sylvia Orli, Smithsonian Institution; Ingrid Lin, Smithsonian Institution; Nathan Anderson, Smithsonian Institution|| [https://drive.google.com/file/d/1saJuXqKWLjy1aH8bEgfEOf4rR4e9BJNW/view?usp=sharing ArcGIS Online for born digital data: our experience 6 months in] <br>
Rick Levy, Denver Botanic Gardens; Michelle DePrenger-Levin, Denver Botanic Gardens   
Rick Levy, Denver Botanic Gardens; Michelle DePrenger-Levin, Denver Botanic Gardens   
|| DAM it All: Media Metadata and Asset Management Across the Museum <br> Alyson Wilkins, Natural History Museum of Utah
|| [https://drive.google.com/file/d/1AF48Z-jq0PxxR0JXY9XfNLFaslOsWW1D/view?usp=sharing DAM it All: Media Metadata and Asset Management Across the Museum] <br> Alyson Wilkins, Natural History Museum of Utah
|-
|-
| 12:00 – 12:10    || Digitizing the USNM dragonfly and damselfly collection <br>
| 12:00 – 12:10    || [https://drive.google.com/file/d/1vDtpYaadPyEVFF0I_ESNgHZe3JfzuJdD/view?usp=sharing Digitizing the USNM dragonfly and damselfly collection] <br>
Torsten Dikow, Smithsonian National Museum of Natural History (USNM), Department of Entomology; Jessica Bird, USNM, Department of Entomology; Erin Kolski, USNM, Department of Entomology; Jeanine Nault, Smithsonian Digitization Program Office; Peter Grisafi, Picturae
Torsten Dikow, Smithsonian National Museum of Natural History (USNM), Department of Entomology; Jessica Bird, USNM, Department of Entomology; Erin Kolski, USNM, Department of Entomology; Jeanine Nault, Smithsonian Digitization Program Office; Peter Grisafi, Picturae
|| Introducing taxastand and dwctaxon, a pair of R packages for standardizing species names in Darwin Core format <br> Joel Nitta, The University of Tokyo; Wataru Iwasaki, The University of Tokyo || Reading Others’ Herbarium Specimen Barcodes During Mass Digitization Projects <br> David Shorthouse, Agriculture & Agri-Food Canada; Shannon Asencio, Agriculture & Agri-Food Canada
|| [https://drive.google.com/file/d/1XDf9UFZznL9LxvNM6rOodA-R7UmpFGQY/view?usp=sharing Introducing taxastand and dwctaxon, a pair of R packages for standardizing species names in Darwin Core format] <br> Joel Nitta, The University of Tokyo; Wataru Iwasaki, The University of Tokyo || [https://drive.google.com/file/d/19KKYF89CqJ1iUd_Or2dnys4z5JUmLLmF/view?usp=sharing Reading Others’ Herbarium Specimen Barcodes During Mass Digitization Projects] <br> David Shorthouse, Agriculture & Agri-Food Canada; Shannon Asencio, Agriculture & Agri-Food Canada
|-
|-
| 12:10 – 12:20    || Creation of the NMNH Informatics and Data Science Center <br> Rebecca Snyder, Smithsonian National Museum of Natural History || Digi-Leap: Connecting Novel Tools, Machine Learning and Public Participation to Label Digitization Efforts <br> Robert Guralnick, University of Florida; Michael Denslow, University of Florida; Julie Allen, University of Nevada, Reno; Samantha Blickhan, Zooniverse & Adler Planetarium; Raphael LaFrance, University of Florida; Mark Bouslog, Zooniverse & Adler Planetarium; Sean Miller, Zooniverse & Adler Planetarium ||  Integrating Wikidata into collection management software <br>
| 12:10 – 12:20    || [https://drive.google.com/file/d/1dsv4T7o5_3jXn1UPVhUTlKnRE6LpC75i/view?usp=sharing Creation of the NMNH Informatics and Data Science Center] <br> Rebecca Snyder, Smithsonian National Museum of Natural History <br> || [https://drive.google.com/file/d/17326H_r5czOP3Xyb3JEA7kwnx3T9pd_S/view?usp=sharing Digi-Leap: Connecting Novel Tools, Machine Learning and Public Participation to Label Digitization Efforts] <br> Robert Guralnick, University of Florida; Michael Denslow, University of Florida; Julie Allen, University of Nevada, Reno; Samantha Blickhan, Zooniverse & Adler Planetarium; Raphael LaFrance, University of Florida; Mark Bouslog, Zooniverse & Adler Planetarium; Sean Miller, Zooniverse & Adler Planetarium ||  [https://drive.google.com/file/d/1Lzf0jegvQFTBpNfbviGekmJzyzWmn2md/view?usp=sharing Integrating Wikidata into collection management software] <br>
Wai-Yin Kwan, Seth Kaufman, Eve Perry
Wai-Yin Kwan, Seth Kaufman, Eve Perry
|-
|-
| 12:20 – 12:30  || What does digitizing fossils in situ mean for museum collections and our data ecosystem? <br>
| 12:20 – 12:30  || [https://drive.google.com/file/d/18euYMDtafOkzmOIPu2T6l53KKb0LsJpN/view?usp=sharing What does digitizing fossils in situ mean for museum collections and our data ecosystem?] <br>
Holly Little, Smithsonian Institution; Jessica Nakano, Smithsonian Institution; Nick Pyenson, Smithsonian Institution   
Holly Little, Smithsonian Institution; Jessica Nakano, Smithsonian Institution; Nick Pyenson, Smithsonian Institution   
|| Once Upon a Time, in TaxonWorks <br><br> Matthew Yoder, Deborah Paul, Species File Group, INHS, University of Illinois; Tommy McElrath, INHS Insect Collection, University of Illinois; José Luis Pereira, División Entomología, Museo de La Plata, UNLP, Argentina ||  
|| [https://drive.google.com/file/d/17n455sp3aOSdXqaXQ3Tu4bFK6jxzXSaj/view?usp=sharing Once Upon a Time, in TaxonWorks] <br><br> Matthew Yoder, Deborah Paul, Species File Group, INHS, University of Illinois; Tommy McElrath, INHS Insect Collection, University of Illinois; José Luis Pereira, División Entomología, Museo de La Plata, UNLP, Argentina || Conveyor-driven mass-digitization of a million specimens does not cost a million <br>
Hannu Saarenmaa & Janne Karppinen, Bioshare Digitization Ltd, Ilomantsi, Finland
|-
|-
| ''12:30 - 1:30'' || colspan="3"|''Lunch''
| ''12:30 - 1:30'' || colspan="3"|''Lunch''
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|+ style="font-size: 120%; background-color:lightgray;"|Themed Discussion Groups
|+ style="font-size: 120%; background-color:lightgray;"|Themed Discussion Groups
|-
|-
! style="width:10%;"|Time EDT !! style="width:45%;"|[https://ufl.zoom.us/webinar/register/WN_Wz1eR2jBSwCRsxobGM1jEw Click to join Zoom, Room 1] !! style="width:45%;"|[https://ufl.zoom.us/j/95949400366 Click to join Zoom, Room 2]
! style="width:10%;"|Time EDT !! style="width:45%;"|[https://drive.google.com/file/d/1MM3ZLk_rF1MOkGOe_yRFCy6aC861Q0Fh/view?usp=sharing Recording for Day 2, Room 1] !! style="width:45%;"|[https://ufl.zoom.us/rec/share/NZIB7V3Qaog-6mrTV90jOKvV_WaG5wU62wsHByAyGAod4JFJQonw7HrKUBN9Z8GJ.pw-5-YxCrB_H2aBh Recording for Day 2, Room 2]
|-
|-
| 1:30 - 2:30      || Solution for long-term image storage and accessibility <br> Dave Blackburn, University of Florida; Doug Boyer, Duke University; Nico Franz, Arizona State University; Michelle Koo, University of California - Berkeley; Nelson Rios, Yale University; Julie Winchester, Duke University         
| 1:30 - 2:30      || Solution for long-term image storage and accessibility <br> Dave Blackburn, University of Florida; Doug Boyer, Duke University; Nico Franz, Arizona State University; Michelle Koo, University of California - Berkeley; Nelson Rios, Yale University; Julie Winchester, Duke University         
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Cat Chapman, iDigBio; Margot Schneider, Atlas of Living Australia; Dora Canhos, CRIA; Andrea Hahn, GBIF; Elspeth Haston, RBGE  
Cat Chapman, iDigBio; Margot Schneider, Atlas of Living Australia; Dora Canhos, CRIA; Andrea Hahn, GBIF; Elspeth Haston, RBGE  
|-
|-
| 2:30 - 3:30      || GBIF, ALA, iDigBio: Aligning systems to benefit data mobilization <br> Maureen Kelly, iDigBio; Federico Mendez, GBIF; Javier Molina, Atlas of Living Australia;  Chris Wilson, iDigBio
| 2:30 - 3:30      || GBIF, ALA, iDigBio: Aligning systems to benefit data mobilization <br> Maureen Kelly, iDigBio; Federico Mendez, GBIF; Javier Molina, Atlas of Living Australia;  Chris Wilson, iDigBio <br> [https://drive.google.com/file/d/12Niyrp1sGh8hPmwekqEpK4GZxbc3vuA5/view?usp=sharing (Molina) Click for pre-recorded presentation]
|| Sustaining Institutional Digitization of Biodiversity Collections: Considerations and Examples <br> Austin Mast, iDigBio, Florida State University; Jenn Yost, CalPoly; David Jennings, iDigBio, University of Florida
|| Sustaining Institutional Digitization of Biodiversity Collections: Considerations and Examples <br> Austin Mast, iDigBio, Florida State University; Jenn Yost, CalPoly; David Jennings, iDigBio, University of Florida
|-
|-
| 3:30 - 4:30      || Including Indigenous Metadata in Collection Records <br> Maui Hudson, University of Waikato; Jane Anderson, New York University                || Digital Extended Specimen Discussion Session <br>
| 3:30 - 4:30      || Including Indigenous Metadata in Collection Records <br> Maui Hudson, University of Waikato; Jane Anderson, New York University                || Digital Extended Specimen Discussion Session <br>
Libby Ellwood, iDigBio; Katja Seltmann, Cheadle Center for Biodiversity and Ecological Restoration, UC Santa Barbara; Julie Allen, University of Nevada, Reno; Katie Pearson and Ed Gilbert, Symbiota Support Hub
Libby Ellwood, iDigBio; Katja Seltmann, Cheadle Center for Biodiversity and Ecological Restoration, UC Santa Barbara; Julie Allen, University of Nevada, Reno; Katie Pearson and Ed Gilbert, Symbiota Support Hub; Abby Benson, USGS
|}
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|+ style="font-size: 120%; background-color:lightgray;"|Workshop: hands-on/ sharing resources
|+ style="font-size: 120%; background-color:lightgray;"|Workshop: hands-on/ sharing resources
|-
|-
! style="width:10%;"|Time EDT !! style="width:45%;"|[https://ufl.zoom.us/webinar/register/WN_Wz1eR2jBSwCRsxobGM1jEw Click to join Zoom, Room 1] !! style="width:45%;"|[https://ufl.zoom.us/j/95949400366 Click to join Zoom, Room 2]
! style="width:10%;"|Time EDT !! style="width:45%;"| !!  
|-
|-
| 11:00 - 1:00 || Digitization Workflows in Symbiota-based Biodiversity Specimen Data Portals <br>
| 11:00 - 1:00 || Digitization Workflows in Symbiota-based Biodiversity Specimen Data Portals <br> [https://ufl.zoom.us/rec/share/54m98uKb-yD_qNOTmWm7qrr-s5tnpkgMDfq35aaL1PbDh0uOf-rKZQPLOzCuUJMe.z_rZBfRqsSB3Kcu2?startTime=1664463615000 Recording for Day 3, Room 1, Symbiota] <br>
Katie Pearson, Symbiota Support Hub, Arizona State University; Lindsay Walker, Symbiota, ASU
Katie Pearson, Symbiota Support Hub, Arizona State University; Lindsay Walker, Symbiota, ASU
  ||Capturing trait data: broad, across different taxonomic groups <br>
  || Capturing trait data: broad, across different taxonomic groups <br>
[https://ufl.zoom.us/rec/share/41sl2FgIPhZxkiS2zSfMoWxMEv9SvchyMgYLsKDZXRQ8K144Hk_1ZrGwhXvVDsYZ.cwejUrC-ENrzq8Bz Recording for Day 3, Room 2, Traits]<br>
Rob Guralnick, Florida Museum of Natural History; Maggie Hantak, FLMNH; Ed Stanley, FLMNH; Julie Allen, University of Nevada at Reno; Jacob Idec, FLMNH; Bryan McLean, University of North Carolina, Greensboro
Rob Guralnick, Florida Museum of Natural History; Maggie Hantak, FLMNH; Ed Stanley, FLMNH; Julie Allen, University of Nevada at Reno; Jacob Idec, FLMNH; Bryan McLean, University of North Carolina, Greensboro
|-
|-
| 1:30 - 3:30  || Digitization Coordination: Combining Project Management & Digitization Efforts to Benefit Collections, Big and Small <br>
| ''1:00  - 1:30'' || ''Break'' || ''Break''
Jackie Chapman, Smithsonian Libraries and Archives; Frederik Berger, MfN Berlin; Helen Hardy, NHM London; Sylvia Orli, NMNH Smithsonian; Mareike Petersen, MfN Berlin; Kira Sobers, Smithsonian Libraries and Archives; Alyson Wilkins, NHMU Utah   
|-
| 1:30 - 3:30  || Digitization Coordination: Combining Project Management & Digitization Efforts to Benefit Collections, Big and Small <br> [https://ufl.zoom.us/rec/share/54m98uKb-yD_qNOTmWm7qrr-s5tnpkgMDfq35aaL1PbDh0uOf-rKZQPLOzCuUJMe.z_rZBfRqsSB3Kcu2?startTime=1664472562000 Recording for Day 3, Room 1, Digitization Coordination]
Jackie Chapman, Smithsonian Libraries and Archives; Frederik Berger, MfN Berlin; Helen Hardy, NHM London; Sylvia Orli, NMNH Smithsonian; Mareike Petersen, MfN Berlin; Kira Sobers, Smithsonian Libraries and Archives; Alyson Wilkins, NHMU Utah; Jill Goodwin, iDigBio, FLMNH  
|| Imaging Biodiversity Specimens: First Steps to a Great Start (and Beyond) <br>
|| Imaging Biodiversity Specimens: First Steps to a Great Start (and Beyond) <br>
Austin Mast, Florida State University, Dept of Biological Science; Lauren Cohen, FSU, Institute for Digital Information and Scientific Communication; Nicole James, FSU, Institute for Digital Information and Scientific Communication; Alex Adkinson, FSU, Department of Art; Mark Smith, Macroscopic Solutions
[https://ufl.zoom.us/rec/share/Bf_XrrjrVOhD0dcluo5KltuVFcHBe2DGcBa5OlDYIcNARKRlbJFXGbkWGobtgR5X.k4CXmAfMJEhyJNnt Recording for Day 3, Room 2, Imaging]<br>Austin Mast, Florida State University, Dept of Biological Science; Alex Adkinson, FSU, Department of Art; Lauren Cohen, FSU, Institute for Digital Information and Scientific Communication; Nicole James, FSU, Institute for Digital Information and Scientific Communication; Zach Randall, FLMNH; Mark Smith, Macroscopic Solutions
|-
|-
| 3:30 - 4:00  || Wrap-Up                            ||
| '''3:30 - 4:00'''   || '''Wrap-Up'''                           ||
|}
|}

Latest revision as of 09:49, 30 September 2022

Biodigicon2022.png

iDigBio is pleased to invite you to this year’s Biodiversity Digitization Conference (BioDigiCon) to be held virtually on 27-29 September 2022.

Social Media

Twitter: #biodigicon2022, @idigbio

Announcement Page

BioDigiCon 2022 Announcement page

Conference Registration

Registration is open! Please register via Eventbrite: https://www.eventbrite.com/e/2022-biodigicon-tickets-367104919697

Abstracts

Conference Resources

Zoom Information

  • Make sure you have upgraded your Zoom client.
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  • We will be using the Zoom webinar platform. Only speakers' cameras and microphones will be enabled.
  • Please use the Zoom Q&A feature if you have questions for the presenters. The chat function will only be used for discussion.

Recording Policy

By attending iDigBio’s online events, you accept that the event will be recorded and posted for later asynchronous viewing.

Presenters have submitted pre-recorded presentations for the option to watch asynchronously but all sessions will take place live.

Post Conference Survey

We would love your feedback from the conference:
Please click here to complete the survey

Conference Agenda

Day 1 - Tuesday, 27 September 2022

iDigBio Orientation
Time EDT iDigBio Orientation Recording
10:30 - 10:50 iDigBio: Intro & What's New
10:50 - 11:10 iDigBio: Orientation
11:10 - 12:00 Discussion session for new and existing TCNs: Reporting, Tracking, Keeping people engaged
12:00 - 1:00 Lunch
TCN Presentations
Time EDT Recording for Day 1, Room 1 Recording for Day 1, Room 2
1:00 - 1:15
1:15 - 1:30 Digitization and Enrichment of U.S. Herbarium Data from Tropical Africa to Enable Urgent Quantitative Conservation Assessments (Peterson)
Pre-recorded presentation
1:35 - 1:45 Terrestrial Parasite Tracker (Tucker/Zaspel)
Pre-recorded Presentation
1:45 - 1:55 oVert: openVertebrate (Blackburn)
Pre-recorded presentation
Extending Anthophila research through image and trait digitization: Big-Bee (Seltmann)
Pre-recorded presentation
1:55 - 2:05 Lepidoptera of North America Network:LepNet/ Symbiota2 Collections of Arthropods Network: SCAN (Cobb) Building a global consortium of bryophytes and lichens: keystones of cryptobiotic communities: GLOBAL (Budke)
Pre-recorded presentation
2:05 - 2:15 Break Break
2:15 - 2:25 Mobilizing Millions of Marine Mollusks of the Eastern Seaboard:ESB (Bieler)
Pre-recorded Presentation
The Texas Oklahoma Regional Consortium of Herbaria: TORCH (Barroso)
Pre-recorded Presentation
2:25 - 2:35 Documenting Marine Biodiversity Through Digitization of Invertebrate Collections: DigIn (Westover) Capturing California's Flowers: Using Digital Images to Investigate Phenological Change in a Biodiversity Hotspot (Yost)
2:35 - 2:45 Break Break
2:45 - 2:55 Enhancing Access to Taxonomic and Biogeographical Data to Stem the Tide of Extinction of the Highly Imperiled Pacific Island Land Snails: PILSBRY (Yeung)
Pre-recorded Presentation
The Pteridological Collections Consortium: An integrative Approach to Pteridophyte Diversity Over the Last 420 Million Years: PCC (Rothfels)
2:55 - 3:05 Break Break
3:05 - 3:15 Digitizing "Endless Forms": Facilitating Research on Imperiled Plants with Extreme Morphologies: Endless Forms (Pace)
Pre-recorded Presentation
The Key to the Cabinets: Building and Sustaining a Research Database for a Global Biodiversity Hotspot: SERNEC (Denslow)
Pre-recorded Presentation
3:15 - 3:25 Using Herbarium Data to Document Plant Niches in the High Peaks and High Plains of the Southern Rockies - Past, Present, and Future: SoRo (Allen)
Pre-recorded Presentation
3:25 - 3:35 Bringing Asian plant diversity to digital life (Davis)
3:35 - 4:00 Q & A / Open Discussion / Wrap-Up

Day 2 - Wednesday, 28 September 2022

Visionary Plenary
Time EDT Plenary Speaker Recording
10:00 - 10:10 Welcome: Gil Nelson
Introduction of speaker: Pam Soltis
10:10 - 10:30 Visionary Plenary: BIODIGICON 2022: Impacts and Importance of Biodiversity Digitization
Dena Smith, National Science Foundation
Biodiversity Digitization Lightning Presentations
Time EDT Recording for Day 2, Room 1 Recording for Day 2, Room 2 Recording for Day 2, Room 3
10:30 – 10:40 Updates From the Biological Sciences Directorate at National Science Foundation
Steven E. Ellis, Division of Biological Infrastructure, National Science Foundation
Arctos: A Collaborative and Scalable Collection Management Solution
Emily Braker, University of Colorado Museum of Natural History
10:40 – 10:50 US National Science Foundation TIP Program Post Mortem It Sorts 'Em - Specify 6 and 7: An Overview from a User Perspective
Randy Singer, University of Michigan Museum of Zoology
Using digitisation data to move a herbarium
Claire Brandenburger, National Herbarium of NSW, Australian Institute of Botanical Science; Hannah McPherson, National Herbarium of NSW; Andre Badiou, National Herbarium of NSW; Mel Wong, National Herbarium of NSW; Guy Lowe, National Herbarium of NSW.
10:50 – 11:00 CHIPS, Science, and Collections.
Reed S. Beaman, National Science Foundation
Symbiota: Managing and Mobilizing Biodiversity Data and Supporting Data Providers
Katie Pearson, Symbiota Support Hub; Edward Gilbert, Arizona State University; Nico Franz, Arizona State University; Jenn Yost, California Polytechnic State University; Samanta Orellana, Arizona State University; Greg Post, Arizona State
I’m Lichen These Images: Workflows established for the GLOBAL TCN project.
Laura Briscoe, New York Botanical Garden; Leanna McMillin, New York Botanical Garden
11:00 – 11:10 US National Science Foundation Review, Q&A EMu at the Smithsonian
Michelle Brown, Smithsonian National Museum of Natural History; Beth Gamble, NMNH; Ducky Nguyen, NMNH; Rebecca Snyder, NMNH
Digitisation & Mobilisation of CSIRO’s Biological Collections
Nicole Fisher, CSIRO; Pete Thrall, CSIRO
11:10 – 11:20 Specimen Digitization as Art
Zach Randall, Florida Museum of Natural History
10 minutes of Q&A with database panel A workflow for cleaning Notes from Nature data transcriptions
Peter Oboyski, Essig Museum of Entomology, UC Berkeley
11:20 – 11:30 Histological slides and other sequentially sectioned objects in museums can be re-born digital 3D resources
Doug Boyer, Duke University (MorphoSource); Jocelyn Triplett, MorphoSource; Julie Winchester, MorphoSource; Jim Hanken, Harvard; Stephen Turney, Harvard; Brendan Haley, Harvard; Breda Zimkus, Harvard
Herbarium Pomeranicum
Marta Jarosińska, University of Gdańsk
New data models create new challenges for data sharing: looking at collections through the lens of events
Ely Wallis, Atlas of Living Australia, CSIRO
11:30 – 11:40 Extending the Digital Extended Specimen
Amanda Harmon, A.C. Moore Herbarium (USCH); Csilla Czako, South Carolina Department of Natural Resources; Avery Browning, University of South Carolina School of Earth, Ocean, and Environment; Herrick, Brown, A.C. Moore Herbarium (USCH)
Tracking biotic association claims across platforms, collections, and institutions.
Jorrit Poelen, Ronin Institute / UC Santa Barbara Cheadle Institute for Biodiversity and Ecological Restoration
Digitization and Dissemination of Phylogenetic Data: Using MorphoBank for Morphological Matrix Management
Brooke Long-Fox, Phoenix Bioinformatics; Kenzley Alphonse, Kenx Technology, Inc.; Maureen O’Leary, Stony Brook University; Tanya, Berardini, Phoenix Bioinformatics
11:40 - 11:50 Break Break Break
11: 50 – 12:00 A Fully Digitized Herbarium - Workflows to Keep Up 100%
Sylvia Orli, Smithsonian Institution; Ingrid Lin, Smithsonian Institution; Nathan Anderson, Smithsonian Institution
ArcGIS Online for born digital data: our experience 6 months in

Rick Levy, Denver Botanic Gardens; Michelle DePrenger-Levin, Denver Botanic Gardens

DAM it All: Media Metadata and Asset Management Across the Museum
Alyson Wilkins, Natural History Museum of Utah
12:00 – 12:10 Digitizing the USNM dragonfly and damselfly collection

Torsten Dikow, Smithsonian National Museum of Natural History (USNM), Department of Entomology; Jessica Bird, USNM, Department of Entomology; Erin Kolski, USNM, Department of Entomology; Jeanine Nault, Smithsonian Digitization Program Office; Peter Grisafi, Picturae

Introducing taxastand and dwctaxon, a pair of R packages for standardizing species names in Darwin Core format
Joel Nitta, The University of Tokyo; Wataru Iwasaki, The University of Tokyo
Reading Others’ Herbarium Specimen Barcodes During Mass Digitization Projects
David Shorthouse, Agriculture & Agri-Food Canada; Shannon Asencio, Agriculture & Agri-Food Canada
12:10 – 12:20 Creation of the NMNH Informatics and Data Science Center
Rebecca Snyder, Smithsonian National Museum of Natural History
Digi-Leap: Connecting Novel Tools, Machine Learning and Public Participation to Label Digitization Efforts
Robert Guralnick, University of Florida; Michael Denslow, University of Florida; Julie Allen, University of Nevada, Reno; Samantha Blickhan, Zooniverse & Adler Planetarium; Raphael LaFrance, University of Florida; Mark Bouslog, Zooniverse & Adler Planetarium; Sean Miller, Zooniverse & Adler Planetarium
Integrating Wikidata into collection management software

Wai-Yin Kwan, Seth Kaufman, Eve Perry

12:20 – 12:30 What does digitizing fossils in situ mean for museum collections and our data ecosystem?

Holly Little, Smithsonian Institution; Jessica Nakano, Smithsonian Institution; Nick Pyenson, Smithsonian Institution

Once Upon a Time, in TaxonWorks

Matthew Yoder, Deborah Paul, Species File Group, INHS, University of Illinois; Tommy McElrath, INHS Insect Collection, University of Illinois; José Luis Pereira, División Entomología, Museo de La Plata, UNLP, Argentina
Conveyor-driven mass-digitization of a million specimens does not cost a million

Hannu Saarenmaa & Janne Karppinen, Bioshare Digitization Ltd, Ilomantsi, Finland

12:30 - 1:30 Lunch
BiotaPhy Webinar
Time EDT Click to join the BiotaPhy Webinar
12:30 - 1:30 BiotaPhy Webinar 2: Resolving Nomenclature: Making Appropriate Taxonomic Choices

Maria Beatriz de Souza Cortez, University of Florida; Aimee Stewart, Biodiversity Institute, University of Kansas
BioDigiCon is pleased to provide the platform for one of a series of 10 webinars sponsored by BiotaPhy, a set of computational workflows with broad impact on data-intensive research spanning ecology, phylogenetics, systematics, and conservation biology.
To learn more about the webinar series visit the BiotaPhy Webinar Announcement Page
Click here to register for the BiotaPhy webinar.

Themed Discussion Groups
Time EDT Recording for Day 2, Room 1 Recording for Day 2, Room 2
1:30 - 2:30 Solution for long-term image storage and accessibility
Dave Blackburn, University of Florida; Doug Boyer, Duke University; Nico Franz, Arizona State University; Michelle Koo, University of California - Berkeley; Nelson Rios, Yale University; Julie Winchester, Duke University
Data quality: most common data dealbreakers

Cat Chapman, iDigBio; Margot Schneider, Atlas of Living Australia; Dora Canhos, CRIA; Andrea Hahn, GBIF; Elspeth Haston, RBGE

2:30 - 3:30 GBIF, ALA, iDigBio: Aligning systems to benefit data mobilization
Maureen Kelly, iDigBio; Federico Mendez, GBIF; Javier Molina, Atlas of Living Australia; Chris Wilson, iDigBio
(Molina) Click for pre-recorded presentation
Sustaining Institutional Digitization of Biodiversity Collections: Considerations and Examples
Austin Mast, iDigBio, Florida State University; Jenn Yost, CalPoly; David Jennings, iDigBio, University of Florida
3:30 - 4:30 Including Indigenous Metadata in Collection Records
Maui Hudson, University of Waikato; Jane Anderson, New York University
Digital Extended Specimen Discussion Session

Libby Ellwood, iDigBio; Katja Seltmann, Cheadle Center for Biodiversity and Ecological Restoration, UC Santa Barbara; Julie Allen, University of Nevada, Reno; Katie Pearson and Ed Gilbert, Symbiota Support Hub; Abby Benson, USGS

Day 3 - Thursday, 29 September 2022

Workshop: hands-on/ sharing resources
Time EDT
11:00 - 1:00 Digitization Workflows in Symbiota-based Biodiversity Specimen Data Portals
Recording for Day 3, Room 1, Symbiota

Katie Pearson, Symbiota Support Hub, Arizona State University; Lindsay Walker, Symbiota, ASU

Capturing trait data: broad, across different taxonomic groups

Recording for Day 3, Room 2, Traits
Rob Guralnick, Florida Museum of Natural History; Maggie Hantak, FLMNH; Ed Stanley, FLMNH; Julie Allen, University of Nevada at Reno; Jacob Idec, FLMNH; Bryan McLean, University of North Carolina, Greensboro

1:00 - 1:30 Break Break
1:30 - 3:30 Digitization Coordination: Combining Project Management & Digitization Efforts to Benefit Collections, Big and Small
Recording for Day 3, Room 1, Digitization Coordination

Jackie Chapman, Smithsonian Libraries and Archives; Frederik Berger, MfN Berlin; Helen Hardy, NHM London; Sylvia Orli, NMNH Smithsonian; Mareike Petersen, MfN Berlin; Kira Sobers, Smithsonian Libraries and Archives; Alyson Wilkins, NHMU Utah; Jill Goodwin, iDigBio, FLMNH

Imaging Biodiversity Specimens: First Steps to a Great Start (and Beyond)

Recording for Day 3, Room 2, Imaging
Austin Mast, Florida State University, Dept of Biological Science; Alex Adkinson, FSU, Department of Art; Lauren Cohen, FSU, Institute for Digital Information and Scientific Communication; Nicole James, FSU, Institute for Digital Information and Scientific Communication; Zach Randall, FLMNH; Mark Smith, Macroscopic Solutions

3:30 - 4:00 Wrap-Up