Capturing California's Flowers: Using Digital Images to Investigate Phenological Change in a Biodiversity Hotspot: Difference between revisions

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 ''Project Manager:'' [mailto:kdpearso@calpoly.edu Katie Pearson]<br>
 ''Data Manager:'' Jason Alexander<br>
+=== Phenological Data  ===
+The CAP TCN has developed tools, workflows, and guides for creating and storing specimen-based phenological data. The most comprehensive repository of these resources can be found on our [https://www.capturingcaliforniasflowers.org/phenology.html project website]. Key resources are also linked below.
+*Scoring Phenological Traits Using Symbiota Tools: [[File:PhenologicalScoringCAPTCN.pdf]]
+*Downloading trait data from the CCH2 portal: [https://www.capturingcaliforniasflowers.org/phenology.html#Output here]
 === Protocols & Workflows ===
@@ Line 47: / Line 54: @@
 === Publications ===
+Pearson KD, Love NR, Ramirez Parada T, Mazer SJ, Yost JM. 2021. Phenological trends in the California poppy (Eschscholzia californica): Digitized herbarium specimens reveal intraspecific variation in the sensitivity of flowering date to climate change. ''Madroño''.
 Goëau H, Mora-Fallas A, Champ J, Love NLR, Mazer SJ, Mata-Montero E, Joly A, Bonnet P. 2020. A new fine-grained method for automated visual analysis of herbarium specimens: A case study for phenological data extraction. ''Applications in Plant Sciences'' 8(6):e11368. doi:10.1002/aps3.11368
 Pearson KD, Nelson G, Aronson MFJ, Bonnet P, Brenskelle L, Davis CC, Denny EG, Ellwood ER, Goëau H, Heberling JM, Joly A, Lorieul T, Mazer SJ,
@@ Line 62: / Line 71: @@
 ====Conference Talks====
+* Yost J, Pearson KD. Digitizing California’s National Forest Herbaria. [Lightning Talk]. Northern California Botanists Symposium January 11, 2022.
+* Pearson KD. A public resource for tracking invasive plants: the Consortium of California Herbaria’s CCH2 Portal. (Lightning Talk). California Invasive Plant Council 30-Year Anniversary Symposium. October 27, 2021.
+*Pearson KD, Yost J, et. al. Data standards for the phenology of plant specimens. [Virtual] TDWG 2021. October 19, 2021. [https://doi.org/10.3897/biss.5.74372 Abstract]
+*Pearson KD, Love N, Ramirez Parada T, Mazer S, Yost J. Phenological trends in the California poppy (Eschscholzia californica): Digitized herbarium specimens reveal intraspecific variation in the sensitivity of flowering date to climate change. [Virtual] Botany 2021. July 20, 2021.
+*Pearson KD, Gilbert E, Tyrrell C, Franz N, Yost J. New tools to score, view, and download (phenological) trait data in a Symbiota portal. 5th Annual Digital Data in Biodiversity Research Conference. [Virtual]. June 9, 2021. [https://drive.google.com/file/d/12iFjriVYG13S2VMwxyfiywoNpjcDwjNW/view Recording]
 *Pearson KD, Yost J. The California Phenology Network: Building capacity for sharing specimen-based phenological data. Ecological Society of America Annual Meeting. [Virtual]. August 2020. [https://youtu.be/YO65BPO2MIY Recording]
@@ Line 81: / Line 101: @@
 ====Posters====
+*Pearson KD, Love N, Ramirez Parada T, Mazer S, Yost J. Digitized herbarium specimens reveal intraspecific variation in the sensitivity of flowering date to climate change: A Case Study of the California Poppy (Eschscholzia californica). Southern California Botanists Symposium. [Virtual]. October 16, 2021.
+*Pearson KD, Yost J. Capturing California’s flowers: Mobilizing phenological data from herbarium specimens. Biodiversity Digitization: Celebrating a Decade of Progress. September 22, 2021. [https://drive.google.com/file/d/13NDPRDxb53DIQ2rt1ym_IOsitocEPrbL/view?usp=sharing View Here]
+*Pearson KD, Love NR, Ramirez Parada T, Mazer SJ, Yost JM. New, publicly-available source of phenological data reveals intraspecific variation in the sensitivity of flowering date to climate change: A case study of the California poppy (Eschscholzia californica). Ecological Society of America Annual Meeting. [Virtual]. August 5, 2021. [https://eventscribe.net/2021/ESA/fsPopup.asp?Mode=posterinfo&PosterID=406888 View Here]
+*Waselkov K. Capturing the Flowers of the Sierra Nevada Mountains: The Contribution of the Fresno State Herbarium (FSC) to the California Phenology Network. Society for the Preservation of Natural History Collections. June 2020.  [https://spnhc.biowikifarm.net/wiki/Posters View Here]
 *Pearson KD, Yost JM. Creating and mobilizing specimen-based plant phenological data: The California Phenology Network. Ecological Society of America Annual Meeting. [Virtual]. August 2020. https://www.capturingcaliforniasflowers.org/uploads/1/6/3/7/16372936/cap_tcn_esa2020_v2.pdf
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 === Education and Outreach ===
+====Citizen Science Engagement====
+The CAP Network engages citizen scientists and volunteers through [https://www.zooniverse.org/organizations/md68135/notes-from-nature Notes from Nature] expeditions.
+====Public Presentations====
+*Waselkov K. CSUF Herbarium and its use in phenology research. Soil and Water Conservation Society, California-Nevada Chapter. October 20, 2021.
+*Waselkov K, Riley R. Leafing through the past: A virtual walkthrough of the largest herbarium in the San Joaquin Valley. California Native Plant Society Sequoia Chapter. October 12, 2021.
+*Yost J, Pearson KD, Love N, Ramirez Parada T, Mazer S. SPNHC Natural History Education Demo Camp. 28-29 June 2021.
+*Pearson KD. 2021. Herbarium Specimens and Digitization. San Luis Obispo Master Gardeners. [Virtual]. May 13, 2021.
+*Yost J. 2021. Natural History in the Digital Age. San Luis Obispo Botanical Garden. [Virtual]. February 20, 2021.
+*Pearson KD. Capturing California's Flowers: Building community, capacity, and discovery by digitizing herbarium specimens. Friends of the Chico State Herbarium Annual Meeting. [Virtual]. October 22, 2020.
+*Pearson KD. Green Guardians: How plants protect biodiversity (and you can help from home!). San Luis Obispo Coast District Biodiversity Week. [Virtual]. September 12, 2020. https://www.youtube.com/watch?v=V8NCB413TII
+*Yost J, Pearson KD. Capturing California’s flowers. California Native Plant Society North Coast Chapter. [Virtual]. May 20, 2020. https://www.youtube.com/watch?v=2sIQ4YKpg4Y
+====Outreach Events====
+*Herbarium Specimens and Digitization. November 3. 2021. Taught 33 UC Irvine students how to transcribe specimens in Notes from Nature as part of biological sustainability course.
+*WeDigBio CSULB. October 15, 2021. 40 participants
+*WeDigBio Fresno CNPS. October 14, 2021. 11 participants
+*WeDigBio Virtual, Herbarium Happy Hour. October 15, 2021. 157 participants.
+*WeDigBio @ OSU. October 15, 2021. 35 participants
+*Herbarium Specimens and Digitization. April 21, 2021. Taught UC Irvine students how to transcribe specimens in Notes from Nature as part of biological sustainability course.
+*WeDigBio Spring 2021: Botany Brunch. April 10, 2021. 42 participants
+*WeDigBio Spring 2021: Herbarium Happy Hour. April 8, 2021. 55 participants
+*Herbarium Specimens and Digitization. January 20, 2021. Taught 22 UC Irvine students how to transcribe specimens in Notes from Nature as part of biological sustainability course.
+*Waking Up with WeDigBio. October 17, 2020. Cumulative with Happy Hour: 95 participants
+*WeDigBio Happy Hour. October 15, 2020.
+*Citizen science workshop: Help science study wildflowers! Led by Katie Pearson and aided by Annie Ayers, Josiah Gilbert, and Hunter Johnson. Audience: CNPS-SLO chapter. November 7, 2019.
+*WeDigBio. October 2019. Volunteer mounters (approx. 95 students) participated in transcription via Notes from Nature.
+*Citizen Science Day. April 13, 2019. Over 20 students learned to transcribe records in Notes from Nature.
+*Cal Poly Open House. April 12-13, 2019. Tour to over 60 prospective students and their parents.
 ====Educational Materials====
+* Pearson K, Ramirez Parada T, Mazer S, Love N, Yost J. 2021. Exploring Plant Phenology using Herbarium Specimens: Lab or Workshop. QUBES Educational Resources. doi:[https://qubeshub.org/publications/2476/?v=1 10.25334/NBY6-5A67]
 *Pearson K, Love N, Mazer S. 2020. Peek into Plant Diversity using Herbarium Specimens (Online!). QUBES Educational Resources. doi:[https://qubeshub.org/publications/2068/1 10.25334/YW7C-P170]
 *Pearson K, Love N, Parada T, Yost J. 2020. A New Phenology-focused CURE using Herbarium Specimen Data. Cultivating Scientific Curiosity, QUBES Educational Resources. doi:[https://qubeshub.org/publications/1956/1 10.25334/DBYN-ZX80]
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 ====Undergraduate Courses Conducted====
-*Winter 2021 - Herbarium specimen georeferencing Directed by Oregon State University and aided by Cal Poly. 12 students from Oregon State University.
+*Spring 2022 - Herbarium digitization internship. Directed by Cal Poly. 13 students enrolled from 7 institutions
-*Winter 2021 - Phenological research using herbarium specimens. Directed by Cal Poly and aided by UCSB. 11 students from Cal Poly.
+*Winter 2022 - Herbarium digitization internship. Directed by Cal Poly. 13 students enrolled from 6 institutions
+*Fall 2021 – Herbarium digitization internship. Directed by Cal Poly. 31 students enrolled from 5 institutions (CSU Fullerton, OSU, SFSU, UC Irvine, UCLA)
+*Spring 2021 – Phenological research using herbarium specimens. Directed by UCSB. 15 students from UCSB.
+*Spring 2021 – Advanced herbarium digitization internship. Directed by Cal Poly. 18 students enrolled from 7 institutions (CSU San Bernardino, Pacific Union University, CSU San Francisco, UC Irvine, UC Los Angeles, UC Santa Barbara, UC Santa Cruz)
+*Winter 2021 – Herbarium specimen georeferencing Directed by Oregon State University and aided by Cal Poly. 12 students from Oregon State University.
+*Winter 2021 – Phenological research using herbarium specimens. Directed by Cal Poly and aided by UCSB. 11 students from Cal Poly.
 *Winter 2021 – Herbarium digitization internship. Directed by Cal Poly. 31 students enrolled from 10 institutions (Cal Poly, CSU Fresno, CSUSB, Pacific Union College, SFSU, UC Irvine, UCLA, UC Riverside, UCSB, UCSC).
-*Fall 2020 - Herbarium digitization internship. Directed by Cal Poly. Completed by 58 students from 6 institutions (Cal Poly, CSU Long Beach, Oregon State, UC Irvine, UC Santa Barbara, UC Santa Cruz)
+*Fall 2020 – Herbarium digitization internship. Directed by Cal Poly. Completed by 58 students from 6 institutions (Cal Poly, CSU Long Beach, Oregon State, UC Irvine, UC Santa Barbara, UC Santa Cruz)
-*Spring 2020 - Phenological research using herbarium specimens. Directed by Cal Poly and aided by UCSB. 19 students from Cal Poly.
+*Spring 2020 – Phenological research using herbarium specimens. Directed by Cal Poly and aided by UCSB. 19 students from Cal Poly.
 <p>
 === Project Collaborators  ===
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 =====California Polytechnic State University San Luis Obispo (OBI)=====
-Jennifer Yost (Lead PI), California Polytechnic State University San Luis Obispo [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802301 (NSF Award #1802301)]
+Jennifer Yost (Lead PI), California Polytechnic State University San Luis Obispo [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802301 (NSF Award #1802301)]<br>
+Katie Pearson, project manager
 =====University of California - Berkeley (UC/JEPS)=====
-Brent Mischler, (PI), University of California - Berkeley [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802163 (NSF Award #1802163)]<br>
+Brent Mishler, (PI), University of California - Berkeley [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802163 (NSF Award #1802163)]<br>
+Jason Alexander, data manager
 =====University of California - Santa Barbara (UCSB)=====
 Susan J. Mazer, (PI), University of California - Santa Barbara [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802181 (NSF Award #1802181)]<br>
 Katja Seltmann (Co-PI), University of California - Santa Barbara <br>
+Greg Wahlert, collections manager<br>
 =====California Parks and Recreation, Colorado Desert District (BSCA)=====
@@ Line 147: / Line 214: @@
 =====California State University, San Bernardino (CSUSB)=====
-Kimberlyn Williams, (PI), California State University, San Bernardino
+Kimberlyn Williams, (PI), California State University, San Bernardino<br>
+Lua Lopez, assistant professor<br>
 =====University of California - Davis (DAV)=====
@@ Line 159: / Line 227: @@
 =====Humboldt State University (HSC)=====
 Michael R. Mesler, (PI), Humboldt State University [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802185 (NSF Award #1802185)]<br>
+Oscar Vargas, assistant professor<br>
 Robin Bencie, collections manager
@@ Line 167: / Line 236: @@
 =====University of California - Los Angeles (LA)=====
 Philip Rundel, (PI), University of California - Los Angeles [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802199 (NSF Award #1802199)]<br>
+Victoria Sork, herbarium director<br>
 Thomas Huggins, herbarium coordinator
@@ Line 182: / Line 252: @@
 =====Santa Barbara Botanic Garden (SBBG)=====
 Matt Guilliams, (PI) Santa Barbara Botanic Garden [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802176 (NSF Award #1802176)]<br>
-Lucie Gimmel, herbarium curatorial assistant <br>
+Susana Delgadillo, collections assistant
-Kristen Lehman, laboratory manager
 =====San Diego Natural History Museum (SD)=====
@@ Line 203: / Line 272: @@
 =====University of California - Riverside (UCR)=====
 Amy Litt, (PI), University of California - Riverside [http://www.nsf.gov/awardsearch/showAward?AWD_ID=1802188 (NSF Award #1802188)]<br>
-Andy Sanders, curator
+Andy Sanders, curator<br>
+Mike Cohen, volunteer collections manager
 =====University of California - Santa Cruz (UCSC)=====
@@ Line 211: / Line 281: @@
 ==== 2020 PEN Participants ====
+=====Oregon State University (OSC)=====
+Aaron Liston (lead PI), professor and herbarium director [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)] <br>
+James Mickley, herbarium curator
 =====California Department of Food and Agriculture (CDA)=====
-Genevieve Walden, senior plant systematist
+Genevieve Walden (PI), senior plant systematist
-=====Oregon State University (OSC)=====
-Aaron Liston, professor and herbarium director [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)]
 =====Pacific Union College (PUA)=====
-Aimee Wyrick-Brownsworth, chair and associate professor of biology [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)]
+Aimee Wyrick-Brownsworth (PI), chair and associate professor of biology [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)]
 =====San Francisco State University (SFSU)=====
-Jason Cantley, assistant professor [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001641 (NSF Award #2001641)]
+Jason Cantley (PI), assistant professor [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001641 (NSF Award #2001641)]
 =====California State University, Stanislaus (SHTC)=====
-Andrew Gardner, assistant professor of botany [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)]
+Andrew Gardner (PI), assistant professor of botany [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)]
 =====University of Nevada, Las Vegas (UNLV)=====
-Lloyd Stark, associate professor [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)]
+Lloyd Stark (PI), associate professor [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award #2001644)] <br>
+Mat Sharples, digitization manager
 == PENs ==
@@ Line 241: / Line 313: @@
 ''Project Sponsors'': Oregon State University [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001644 (NSF Award 2001644)], San Francisco State University [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001641 (NSF Award 2001641)], and San Diego Natural History Museum [https://www.nsf.gov/awardsearch/showAward?AWD_ID=2001535 (NSF Award 2001535)]
-''Principal Investigators (PIs)'': [mailto:listona@science.oregonstate.edu Aaron Liston (OSC)], Layla Aerne Hains (SD), Jon Rebman (SD), Jason Cantley (SFSU), Lloyd Stark (UNLV), Jenn Yost (OBI), Aimee Wyrick-Brownworth (PUA), Andrew Gardner (SHTC)
+''Principal Investigators (PIs)'': [mailto:listona@science.oregonstate.edu Aaron Liston (OSC)], Genevieve Walden (CDA), Jenn Yost (OBI), Aimee Wyrick-Brownworth (PUA), Layla Aerne Hains (SD), Jon Rebman (SD), Jason Cantley (SFSU), Andrew Gardner (SHTC), and Lloyd Stark (UNLV)
-''Other collaborators'': Genevieve Walden (CDA)