Digitizing Fluid-preserved Vertebrate Specimens: Difference between revisions

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*[https://docs.google.com/document/d/1nkLlcIofDtWdz58mW096uOt6yo4x30FR123eCE0nR7U/edit?usp=sharing Additional agenda items document]
*[https://docs.google.com/document/d/1nkLlcIofDtWdz58mW096uOt6yo4x30FR123eCE0nR7U/edit?usp=sharing Additional agenda items document]
*[https://docs.google.com/document/d/16KZvAfY8ywCn2BE6C4RyGzXhFu7XM00_4BBzaGAg7Wg/edit?usp=sharing Status of imaging]]
*[https://docs.google.com/document/d/16KZvAfY8ywCn2BE6C4RyGzXhFu7XM00_4BBzaGAg7Wg/edit?usp=sharing Status of imaging]]
*[https://docs.google.com/document/d/1hUKrI8ueCXj_6LxwAutjEPIq59WxJ2XsF3bCwooABD4/edit Imaging Technologies Notes]


==Agenda, Day 1<br>Tuesday, March 15, 2016==
==Agenda, Day 1<br>Tuesday, March 15, 2016==
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|style="vertical-align:top; text-align: left;"|8:15-8:45 a.m.
|style="vertical-align:top; text-align: left;"|8:15-8:45 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
Introduction to ADBC, iDigBio, and TCN Development
[[Media:Page.Cong.Brief.INHS_2016.pdf|Introduction to ADBC, iDigBio, and TCN Development]]
|Larry Page, iDigBio/Florida Museum of Natural History
|Larry Page, iDigBio/Florida Museum of Natural History
|-
|-
|-
|-
|style="vertical-align:top;"|8:45-9:15 a.m.
|style="vertical-align:top;"|8:45-9:15 a.m.
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Why this Workshop?<br>Workshop Goals, Discussion, agenda additions
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|[[Media:Why_this_workshop.pdf|Why this Workshop?]]<br>Workshop Goals, Discussion, agenda additions
|Larry Page <br> Gil Nelson
|Larry Page <br> Gil Nelson
|-
|-
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|-
|-
|style="vertical-align:top;"|9:45-10:15 a.m.
|style="vertical-align:top;"|9:45-10:15 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for imaging herps
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:Kaiser_Illinois.pdf|The case for imaging herps]]
|Hinrich Kaiser, Victor Valley College
|Hinrich Kaiser, Victor Valley College
|-
|-
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|-
|-
|style="vertical-align:top;"|10:45-11:15 a.m.
|style="vertical-align:top;"|10:45-11:15 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for 2D imaging
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:Mark_SabajPerez.pdf|The case for 2D imaging]]
|Mark Sabaj-Perez
|Mark Sabaj-Perez
|-
|-
|-
|-
|style="vertical-align:top;"|11:15-12:00 p.m.
|style="vertical-align:top;"|11:15-12:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for 3D imaging
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:Bart_Case_for_3D_Imagineg_Vertebrate_Speciments.pdf|The case for 3D imaging]]<br>[[Media:Rios_photogrammetry_march2016.pdf|Photogrammetry]]
|Hank Bart, Tulane<br>Nelson Rios, Tulane
|Hank Bart, Tulane<br>Nelson Rios, Tulane
|-
|-
|-
|-
|style="vertical-align:top;"|12:00-12:30 p.m.
|style="vertical-align:top;"|12:00-12:30 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|The case for CT imaging
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:CaseForCT_Blackburn_14March2016.pdf|The case for CT imaging]]
|David Blackburn, Florida Museum of Natural History
|David Blackburn, Florida Museum of Natural History
|-
|-
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|-
|-
|style="vertical-align:top;"|1:30-1:45 p.m.
|style="vertical-align:top;"|1:30-1:45 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Review and discussion of pre-workshop survey results
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:SurveySummary.pdf|Review and discussion of pre-workshop survey results]]
(including discussion of the status of databasing in fish and herp collections)
(including discussion of the status of databasing in fish and herp collections)
|Gil Nelson
|Gil Nelson
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|-
|-
|style="vertical-align:top;"|1:45-3:00 p.m.
|style="vertical-align:top;"|1:45-3:00 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Status of imaging at participating collections:  
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Status of imaging at participating collections:<br>[https://docs.google.com/document/d/16KZvAfY8ywCn2BE6C4RyGzXhFu7XM00_4BBzaGAg7Wg/edit?usp=sharing Document for notetaking]<br>
Each participant to have 3 minutes to outline the status of imaging at their institution.<br>* Current imaging<br>* Issues to resolve<br>* Future plans<br>* Challenges<br>* 2D, 3D, CT, none preferences<br>* Institutional predispositions regarding the value or use of images
Each participant to have 3 minutes to outline the status of imaging at their institution.<br>* Current imaging practices<br>* how are images being used<br>* Issues to resolve<br>* Future plans<br>* Challenges<br>* Institutional choices about what to image<br>* Preferences: 2D, 3D, CT, no imaging<br>* Institutional predispositions regarding the value and use of images
|Greg Watkins-Colwell, Yale Peabody Museum, moderator
|Greg Watkins-Colwell, Yale Peabody Museum, moderator
|-
|-
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|-
|-
|style="vertical-align:top;"|3:30-4:30 p.m.
|style="vertical-align:top;"|3:30-4:30 p.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Imaging for data collection: An overview
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|[[Media:A_researcher’s_perspective.pdf|Imaging for data collection: An overview]]
|Miriam Zelditch, U. Michigan<br>Donald Swigerski, U. Michigan
|Miriam Zelditch, U. Michigan<br>Donald Swigerski, U. Michigan
|-
|-
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|-
|-
|-
|-
|rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own
|rowspan="1" colspan="3" style="text-align:center; background-color:#FFF8DC;"|Dinner on Your Own<br>
Recommended gathering place: [http://www.houlihans.com/my-houlihans/champaign Houlihans]<br> Reservation at 6:15 pm, Meet in hotel lobby at 6:00 pm
|-
|-
|}
|}
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|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|
Breakout discussions focused on uses and value of images:
Breakout discussions focused on uses and value of images:
*Fish
*[https://docs.google.com/document/d/1rry-pVW2rX1nyazW1saURvhaJd--55WAdLrPSl3mBow/edit Fish]
*Herps
*[https://docs.google.com/document/d/1jJD1xVRhYXOyzj_J6cNF8JsR9sB4d3iQJjo1vx9c2p4/edit Herps]<br>
|Chris Phillips, Moderator
|Chris Phillips, Moderator
|-
|-
|-
|-
|style="vertical-align:top;"|9:00-10:00 a.m.
|style="vertical-align:top;"|9:00-10:00 a.m.
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Breakout discussions (results recorded in Google doc):
|rowspan="1" style="vertical-align:top; background-color::#eed1a9;"|Breakout discussions:
Important research questions to be answered by a large dataset of fish and herp images?
Important research questions to be answered by a large dataset of fish and herp images?<br>
*[https://docs.google.com/document/d/15QISIVWc0wvQz4x-O9LJICBYW_TIZR1dajbTqj93i84/edit Research questions 1]
*[https://docs.google.com/document/d/1PK1qO9w_j8EHgSOF7PJ80a7QOCvk0GCTLbC3DbiIs-E/edit?usp=sharing Research questions 2]
*[https://docs.google.com/document/d/1UD54G4tHBdk9RtM8gTLhWV-lUbb_YoztTo6cHUQ5pME/edit Research questions 3]
|Chris Phillips, Moderator
|Chris Phillips, Moderator
|-
|-
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|style="vertical-align:top;"|11:30-12:00 a.m.
|style="vertical-align:top;"|11:30-12:00 a.m.
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Organize for afternoon deliberations:<br>What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN: goals, outcomes, components, and research basis?
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|Organize for afternoon deliberations:<br>What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN: goals, outcomes, components, and research basis?
*Determine discussion group themes
*Determine discussion group themes<br>
**[https://docs.google.com/document/d/1ENCG8CaMtjVcxbIV3TwfNd_bxBYj51PJHnWlVvzvgqo/edit Broader Impacts]
**[https://docs.google.com/document/d/1zgahGenuw3VnpZCVWh7iAnQz97o8TKWD47M25xYy0qk/edit Imaging Focus]
''-Ecological component: looking beyond fishes and herps <br>
''-Digitization of field notes to support digitized images for holistic picture of organisms''<br>
''-Imaging beyond the specimen: utilizing photographs from the field''<br>
''-Broader impacts''<br>
''-Quality of data: Developing standards(Future workshop?)''<br>
*Select discussion group participation
*Select discussion group participation
*Outline expected group discussion and afternoon outcomes
*Outline expected group discussion and afternoon outcomes
*Grand challenge research questions
*Grand challenge research questions
<br>[https://docs.google.com/document/d/1xhHyOqj-8rZSyQEha7La7lb9WAYvIpB_Vn-0D4yo1bo/edit?usp=sharing Discussion documentation]
|Gil Nelson, moderator
|Gil Nelson, moderator
|-
|-
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|style="vertical-align:top;"|
|style="vertical-align:top;"|
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|<b>Afternoon theme:  
|rowspan="1" style="vertical-align:top; background-color:#FFF8DC;"|<b>Afternoon theme:  
What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN?</b>
What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN?</b><br>[https://docs.google.com/document/d/1flC4rgSVuqut7USz4K6XyBCSNXIsGYhk82dkWZ5jXog/edit?usp=sharing Notes document]
*[https://docs.google.com/document/d/158Mf3WqypJPiLHfQHi0N3XVDuTtWVq8owa0H_8Ld1FQ/edit Mechanics]
|Larry Page, moderator
|Larry Page, moderator
|-
|-

Latest revision as of 10:56, 28 March 2016



Overcoming Challenges for Imaging Fluid-preserved Vertebrates

iDigBio Workshops

Logistics

Shared Documents

Agenda, Day 1
Tuesday, March 15, 2016

Day One
Time Topic Presenter(s)/Leader(s)
6:30 - 7:30 a.m. Breakfast at Hotel
Complimentary breakfast 6:30 - 9:30 a.m.
8:00-8:15 a.m. Welcome, Logistics, and Introductions Gil Nelson, iDigBio/Florida State University
Chris Phillips, Illinois Natural History Survey
8:15-8:45 a.m.

Introduction to ADBC, iDigBio, and TCN Development

Larry Page, iDigBio/Florida Museum of Natural History
8:45-9:15 a.m. Why this Workshop?
Workshop Goals, Discussion, agenda additions
Larry Page
Gil Nelson
9:15-9:45 a.m. The case for imaging fish Mark Sabaj-Perez, Drexel
9:45-10:15 a.m. The case for imaging herps Hinrich Kaiser, Victor Valley College
10:15-10:45 a.m. Break
10:45-11:15 a.m. The case for 2D imaging Mark Sabaj-Perez
11:15-12:00 p.m. The case for 3D imaging
Photogrammetry
Hank Bart, Tulane
Nelson Rios, Tulane
12:00-12:30 p.m. The case for CT imaging David Blackburn, Florida Museum of Natural History
12:30-1:30 p.m. Lunch
1:30-1:45 p.m. Review and discussion of pre-workshop survey results

(including discussion of the status of databasing in fish and herp collections)

Gil Nelson
1:45-3:00 p.m. Status of imaging at participating collections:
Document for notetaking

Each participant to have 3 minutes to outline the status of imaging at their institution.
* Current imaging practices
* how are images being used
* Issues to resolve
* Future plans
* Challenges
* Institutional choices about what to image
* Preferences: 2D, 3D, CT, no imaging
* Institutional predispositions regarding the value and use of images

Greg Watkins-Colwell, Yale Peabody Museum, moderator
3:00-3:30 p.m. Break
3:30-4:30 p.m. Imaging for data collection: An overview Miriam Zelditch, U. Michigan
Donald Swigerski, U. Michigan
4:30-4:45 p.m. Discussion/Q&A: Imaging for data collection Miriam & Donald
moderators
4:45-5:00 p.m. Daily wrap-up, observations, comments, challenges, criticisms, further discussion Greg Watkins-Colwell
moderator
Dinner on Your Own

Recommended gathering place: Houlihans
Reservation at 6:15 pm, Meet in hotel lobby at 6:00 pm

Agenda, Day 2
Wednesday, March 16, 2016

Day One
Time Topic Presenter(s)/Leader(s)
6:30 - 7:30 a.m. Breakfast at Hotel
Complimentary breakfast 6:30 - 9:30 a.m.
8:00-8:15 a.m. Lingering questions and observations from Day 1 Larry Page, Moderator
8:15-9:00 a.m.

Breakout discussions focused on uses and value of images:

Chris Phillips, Moderator
9:00-10:00 a.m. Breakout discussions:

Important research questions to be answered by a large dataset of fish and herp images?

Chris Phillips, Moderator
10:00-10:30 a.m. Break
10:30-11:30 a.m. Breakout session reports on potential research questions Mark Sabaj-Perez, moderator
11:30-12:00 a.m. Organize for afternoon deliberations:
What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN: goals, outcomes, components, and research basis?

-Ecological component: looking beyond fishes and herps
-Digitization of field notes to support digitized images for holistic picture of organisms
-Imaging beyond the specimen: utilizing photographs from the field
-Broader impacts
-Quality of data: Developing standards(Future workshop?)

  • Select discussion group participation
  • Outline expected group discussion and afternoon outcomes
  • Grand challenge research questions


Discussion documentation

Gil Nelson, moderator
12:00-1:00 p.m. Lunch
Afternoon theme:

What Should be the Focus of a Fluid-preserved Vertebrate Imaging TCN?
Notes document

Larry Page, moderator
1:00-3:00 p.m. Discussion breakouts
3:00-3:30 p.m. Break
3:30-5:00 p.m. Discussion group reports and additional plenary discussion
Dinner on Your Own